Miyakogusa Predicted Gene
- chr1.LjT30M08.30.nd
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr1.LjT30M08.30.nd + phase: 0 /pseudo
(2527 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC000014A_C01 KMC000014A_c01 545 e-155
KMC000396A_C01 KMC000396A_c01 56 2e-07
KMC000211A_C01 KMC000211A_c01 46 2e-04
>KMC000014A_C01 KMC000014A_c01
Length = 688
Score = 545 bits (275), Expect = e-155
Identities = 282/285 (98%)
Strand = Plus / Minus
Query: 2137 ttccatattgatccttatcaccctgaccaagcttcaaacctattggttgaattcttccaa 2196
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 688 ttccatattgatccttatcaccctgaccaagcttcaaacctattgnttgaattcttccaa 629
Query: 2197 cgatgcaaggaggatccaagccattggaataaaatatctgatggcggtcttcaaagaatt 2256
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 628 cgatgcaaggaggatccaagccattggaataaaatatctgatgncggtcttcaaagaatt 569
Query: 2257 tatgaaaggtatacatggaagatatattctgaaaggcttatgactttggcgggagtttat 2316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tatgaaaggtatacatggaagatatattctgaaaggcttatgactttggcgggagtttat 509
Query: 2317 ggcttctggaaacatgtttccaaattagagaggcgtgaaactcgacgatatcttgagatg 2376
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ggcttctggaaacatgtttccgaattagagaggcgtgaaactcgacgatatcttgagatg 449
Query: 2377 ttctatatccttaagtttcgtgatttggcaaattctgttccactt 2421
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ttctatatccttaagtttcgtgatttggcaaattctgttccactt 404
>KMC000396A_C01 KMC000396A_c01
Length = 1452
Score = 56.0 bits (28), Expect = 2e-07
Identities = 121/152 (79%)
Strand = Plus / Plus
Query: 832 cctatggtgttcaatgttgtcatattatctccacatggctactttgggcaagccaatgtc 891
|||||||| ||||||||||| || | ||||| ||||| ||||||| |||| ||||||
Sbjct: 901 cctatggtcttcaatgttgttatcctttctccccatggatactttgcccaagataatgtc 960
Query: 892 ctgggtttgcctgacactggtggacaggttgtttatatactagatcaagtgcgtgctctt 951
| || | ||||| ||||| |||||||||||||| || | |||||||| ||||| |
Sbjct: 961 ttaggataccctgatactggaggacaggttgtttacatcttggatcaagttcgtgccttg 1020
Query: 952 gagaatgaaatgctccttcgaatcaagaaaca 983
|||||||| ||||| ||| |||||||||||
Sbjct: 1021 gagaatgagatgctaagtcgcatcaagaaaca 1052
Score = 48.1 bits (24), Expect = 4e-05
Identities = 78/96 (81%)
Strand = Plus / Plus
Query: 1241 ttggaaactacagtgatgggaaccttgttgcatctttattggcttataaaatgggagtta 1300
||||||||||||| ||||| ||| | ||||| |||| ||||| ||||| | || || |
Sbjct: 1310 ttggaaactacagggatggaaacatggttgcctcttggttggcacataaattaggtgtaa 1369
Query: 1301 cacagtgcacaattgcgcatgcactggagaagacaa 1336
| ||||| || ||||| |||||||| ||||||||||
Sbjct: 1370 ctcagtgtactattgctcatgcacttgagaagacaa 1405
>KMC000211A_C01 KMC000211A_c01
Length = 722
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 421 tttgagccatttaatgcaacatttcctcgcccaac 455
||||| |||||||||||| | ||||||||||||||
Sbjct: 461 tttgaaccatttaatgcatcgtttcctcgcccaac 495
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8512
Number of Sequences: 8469
Number of extensions: 8512
Number of successful extensions: 2355
Number of sequences better than 1.0e-03: 3
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2341
Number of HSP's gapped (non-prelim): 12
length of query: 2527
length of database: 5,164,774
effective HSP length: 17
effective length of query: 2510
effective length of database: 5,020,801
effective search space: 12602210510
effective search space used: 12602210510
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)