Miyakogusa Predicted Gene
- chr1.LjT29N14.30.nd
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr1.LjT29N14.30.nd + phase: 0
(1842 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC002066A_C01 KMC002066A_c01 841 0.0
KMC001349A_C01 KMC001349A_c01 299 5e-81
KMC004195A_C01 KMC004195A_c01 184 2e-46
>KMC002066A_C01 KMC002066A_c01
Length = 753
Score = 841 bits (424), Expect = 0.0
Identities = 427/428 (99%)
Strand = Plus / Minus
Query: 1415 cagcactgtatgctaatgaccgtgaatcgatcacagtcacagtgcaagaagtgacaccta 1474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 cagcactgtatgctaatgaccgtgaatcgatcacagtcacagtgcaagaagtgacaccta 694
Query: 1475 gatcagttggagctcttattgcactctatgaacgagcagttgggatatatgcctcaattg 1534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 gatcagttggagctcttattgcactctatgaacgagcagttgggatatatgcctcaattg 634
Query: 1535 tcaacataaatgcttatcatcaacctggtgtggaagctggtaagaaagcagcaggagaag 1594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 tcaacataaatgcttatcatcaacctggtgtggaagctggtaagaaagcagcaggagaag 574
Query: 1595 tattagcacttcagaagcgggtattgacagtgctaaatgaggctagctgcaaggagcctg 1654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tattagcacttcagaagcgggtattgacagtgctaaatgaggctagctgcaaggagcctg 514
Query: 1655 ttgaaccattaacacttgaagaagtagctgaccgttgccacgctccagaagatattgaaa 1714
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ttgaaccattcacacttgaagaagtagctgaccgttgccacgctccagaagatattgaaa 454
Query: 1715 taatttacaagattattgctcatatggctgccaacgatagagcactaattgcggaaggta 1774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 taatttacaagattattgctcatatggctgccaacgatagagcactaattgcggaaggta 394
Query: 1775 gctgtggttctccgcggagcatcaaggtttttcttggcgagtgtaatgttgatgaactgt 1834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gctgtggttctccgcggagcatcaaggtttttcttggcgagtgtaatgttgatgaactgt 334
Query: 1835 atgcttga 1842
||||||||
Sbjct: 333 atgcttga 326
>KMC001349A_C01 KMC001349A_c01
Length = 856
Score = 299 bits (151), Expect = 5e-81
Identities = 283/322 (87%), Gaps = 4/322 (1%)
Strand = Plus / Minus
Query: 542 agggtcgtttcactcagatactttctgttgggattggtggttctgctcttggaccgcagt 601
||||||| || ||||| ||| | ||||| || ||||| ||||| ||||||||||| ||||
Sbjct: 345 agggtcgctttactcaaatattgtctgtgggaattggaggttcagctcttggaccacagt 286
Query: 602 ttgttgcggaggcactagcgcccgataatcctcctctcaagataagatttattgacaaca 661
|||| || |||||| | || || ||||||||||| |||||||||||||||||||||||||
Sbjct: 285 ttgtggcagaggcattggctcctgataatcctccactcaagataagatttattgacaaca 226
Query: 662 cagatcctgctggaattgatcaccagattgcacaacttggctctgagctagcttcgaccc 721
|||||||||||||||||||||| |||||||||||||||||| ||||||| || | || |
Sbjct: 225 cagatcctgctggaattgatcatcagattgcacaacttggccctgagctcgcgacaacac 166
Query: 722 ttgtgatagtgatttcaaagag-tggaggtacccctgagaccagaaatggcttattagaa 780
|||||||||||||||||||||| |||||||| || ||||| |||||||| |||||||||
Sbjct: 165 ttgtgatagtgatttcaaagagcnggaggtacacccgagactagaaatggtttattagaa 106
Query: 781 gtacagaaggcctttcgtgaagcaggattgagtttcccaaaaca-gggtgttgcgataac 839
|||||||||||||||||||||||||| ||| ||| || ||||| ||||||||| |||||
Sbjct: 105 gtacagaaggcctttcgtgaagcaggcttggattttccgaaacaggggtgttgctataac 46
Query: 840 acaag-aaaattctttgttgga 860
|||| ||||||||||||||||
Sbjct: 45 -caagaaaaattctttgttgga 25
Score = 101 bits (51), Expect = 2e-21
Identities = 138/167 (82%)
Strand = Plus / Minus
Query: 247 taccagcacaaggacctggggctctacatcgatgtcagccgggtcgggttcaccgacgag 306
|||||||||| ||| |||||||| ||| |||| || || ||||||||||| | || |||
Sbjct: 632 taccagcacagggagctggggctttacctcgacgtgagtcgggtcgggtttagtgatgag 573
Query: 307 tttctgctcgagatggagccccggttccaggcggcgtttcgcgccatggcggagcttgaa 366
||| || ||||||||||||||||| |||||||||| || || |||| |||||| ||
Sbjct: 572 tttgtggcggagatggagccccggtttgaggcggcgttccgggcgatggaggagctggag 513
Query: 367 aagggtgctattgctaaccctgatgaaggacgcatggtgggtcatta 413
|| ||||| |||||||| |||||||| || ||||||||||| |||||
Sbjct: 512 aacggtgcgattgctaatcctgatgagggtcgcatggtggggcatta 466
>KMC004195A_C01 KMC004195A_c01
Length = 817
Score = 184 bits (93), Expect = 2e-46
Identities = 196/229 (85%), Gaps = 1/229 (0%)
Strand = Plus / Minus
Query: 1615 gtattgacagtgctaaatgaggctagctgcaaggagcctgttgaaccattaacacttgaa 1674
|||||| | |||||||||||||| |||||| | |||||||| || || || |||||||||
Sbjct: 812 gtattggccgtgctaaatgaggccagctgccaagagcctgtcgagcccttgacacttgaa 753
Query: 1675 gaagtagctgaccgttgccacgctccagaagatattgaaataatttacaagattattgct 1734
||||||||||| |||||||| |||||| |||||||||||| |||||| | |||||||||
Sbjct: 752 gaagtagctgagcgttgccatgctccaccagatattgaaatgatttaccaaattattgct 693
Query: 1735 cata-tggctgccaacgatagagcactaattgcggaaggtagctgtggttctccgcggag 1793
|| | ||||||| || || |||||||| ||||| ||||| ||||| ||||| ||||||||
Sbjct: 692 cacactggctgcaaatgacagagcacttattgccgaaggcagctgcggttcaccgcggag 633
Query: 1794 catcaaggtttttcttggcgagtgtaatgttgatgaactgtatgcttga 1842
||||||||||| | | || ||||||||||||||||| ||||||||||
Sbjct: 632 catcaaggtttatatcggggagtgtaatgttgatgagtcgtatgcttga 584
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5214
Number of Sequences: 8469
Number of extensions: 5214
Number of successful extensions: 1455
Number of sequences better than 1.0e-03: 3
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1446
Number of HSP's gapped (non-prelim): 5
length of query: 1842
length of database: 5,164,774
effective HSP length: 17
effective length of query: 1825
effective length of database: 5,020,801
effective search space: 9162961825
effective search space used: 9162961825
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)