Miyakogusa Predicted Gene
- chr1.LjT14G19.110.nc
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr1.LjT14G19.110.nc - phase: 2 /partial
(5968 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC014246A_C01 KMC014246A_c01 1292 0.0
KMC005614A_C01 KMC005614A_c01 155 6e-37
>KMC014246A_C01 KMC014246A_c01
Length = 673
Score = 1292 bits (652), Expect = 0.0
Identities = 668/672 (99%), Gaps = 1/672 (0%)
Strand = Plus / Plus
Query: 3208 agcttctgtgcgagatggatacttgacgctctttaagtttttgccacggtcattaggagt 3267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agcttctgtgcgagatggatacttgacgctctttaagtttttgccacggtcattaggagt 60
Query: 3268 ccagttccaaaactatctttctcaggtgctacctgcaatcctggatggtcttgcggatga 3327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ccagttccaaaactatctttctcaggtgctacctgcaatcctggatggtcttgcggatga 120
Query: 3328 gaatgaatctgtacgtgatgctgcactaggggctggtcatgttctggtcgagcattatgc 3387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gaatgaatctgtacgtgatgctgcactaggggctggtcatgttctggtcgagcattatgc 180
Query: 3388 tgcaacgtctctaccacttctccttccagttgttgaggatggcatttttaatgacaa-tt 3446
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 181 tgcaacgtctctaccacttctccttccagttgttgaggatggcattttgaatgacaagtt 240
Query: 3447 ggcgtattcgacaaagctcagttgagctgttgggtgacctattattcaaagttgctggaa 3506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ggcgtattcgacaaagctcagttgagctgttgggtgacctattattcaaagttgctggaa 300
Query: 3507 cttctggtaaagcattacttgagggtggcagtgatgatgaaggttctagtactgaggccc 3566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cttctggtaaagcattacttgagggtggcagtgatgatgaaggttctagtactgaggccc 360
Query: 3567 atgggcgtgccatcattgaggttctggggtacagcaagcgtaatgaagtacttgctgcat 3626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atgggcgtgccatcattgaggttctggggtacagcaagcgtaatgaagtacttgctgcat 420
Query: 3627 tatatatggttcgaacagatgttagtttgtcagtacgtcaggctgcattacatgtgtgga 3686
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 421 tatatatggttcgaacagatgttagtttgtcagtacgtcaggctgcattacgtgtgtgga 480
Query: 3687 aaactattgtggcaaatactccaaagactctaagggaaattatgccagttctgatggata 3746
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 481 aaactattgtggcaaatactccacagactctaagggaaattatgccagttctgatggata 540
Query: 3747 ctttaattgcatctcttgcatcatcatcatctgagaggcggcaggttgccggacgatcat 3806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ctttaattgcatctcttgcatcatcatcatctgagaggcggcaggttgccggacgatcat 600
Query: 3807 tgggtgagcttgtcaggaagcttggtgagcgggtgcttcccttgataatcccaatcttat 3866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tgggtgagcttgtcaggaagcttggtgagcgggtgcttcccttgataatcccaatcttat 660
Query: 3867 cccgggggctga 3878
||||||||||||
Sbjct: 661 cccgggggctga 672
>KMC005614A_C01 KMC005614A_c01
Length = 511
Score = 155 bits (78), Expect = 6e-37
Identities = 78/78 (100%)
Strand = Plus / Minus
Query: 5891 ttggatgctagacgactatcaaagcttcctgaatatagtgatgccagtgaagacagtgat 5950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 ttggatgctagacgactatcaaagcttcctgaatatagtgatgccagtgaagacagtgat 452
Query: 5951 gaagatatgtcaactagc 5968
||||||||||||||||||
Sbjct: 451 gaagatatgtcaactagc 434
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 20,894
Number of Sequences: 8469
Number of extensions: 20894
Number of successful extensions: 5852
Number of sequences better than 1.0e-03: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5846
Number of HSP's gapped (non-prelim): 5
length of query: 5968
length of database: 5,164,774
effective HSP length: 18
effective length of query: 5950
effective length of database: 5,012,332
effective search space: 29823375400
effective search space used: 29823375400
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 23 (46.1 bits)