Miyakogusa Predicted Gene

chr1.LjB10L14.40.nc

BLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= chr1.LjB10L14.40.nc + phase: 0 
         (3513 letters)

Database: lotus_consensus 
           8469 sequences; 5,164,774 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KMC001255A_C01 KMC001255A_c01                                         442   e-123

>KMC001255A_C01 KMC001255A_c01
          Length = 616

 Score =  442 bits (223), Expect = e-123
 Identities = 232/235 (98%)
 Strand = Plus / Minus

                                                                        
Query: 3279 tggaagcatagatcttgaggagtctcataaagtggtgggtacccaggatggttatggtga 3338
            ||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||
Sbjct: 616  tggaagcatagatcttgaggagtctcattcactggtgggtacccaggatggttatggtga 557

                                                                        
Query: 3339 taccgcaaggaccttgagtgaggaggtgaatggaacagcagatgatatagtagagcatgg 3398
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556  taccgcaaggaccttgagtgaggaggtgaatggaacagcagatgatatagtagagcatgg 497

                                                                        
Query: 3399 ttctgagtaccggagtgaatctcatggtggtgttgatgaagaggatgatgaagattaccc 3458
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496  ttctgagtaccggagtgaatctcatggtggtgttgatgaagaggatgatgaagattaccc 437

                                                                   
Query: 3459 tcgtcccggtgaaacttctatagggaagaagctttggaccttttttacaacataa 3513
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436  tcgtcccggtgaaacttctatagggaagaagctttggaccttttttacaacataa 382


  Database: lotus_consensus
    Posted date:  Nov 10, 2006  2:59 PM
  Number of letters in database: 5,164,774
  Number of sequences in database:  8469
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,530
Number of Sequences: 8469
Number of extensions: 16530
Number of successful extensions: 4748
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4747
Number of HSP's gapped (non-prelim): 1
length of query: 3513
length of database: 5,164,774
effective HSP length: 17
effective length of query: 3496
effective length of database: 5,020,801
effective search space: 17552720296
effective search space used: 17552720296
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)