Miyakogusa Predicted Gene
- chr1.CM0955.30.nd
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr1.CM0955.30.nd + phase: 1 /partial
(896 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC005960A_C01 KMC005960A_c01 634 0.0
KMC002840A_C01 KMC002840A_c01 54 2e-07
>KMC005960A_C01 KMC005960A_c01
Length = 532
Score = 634 bits (320), Expect = 0.0
Identities = 320/320 (100%)
Strand = Plus / Minus
Query: 577 ctcttggtaaagttgcacataatgcacatgcttctttccctccctcagtttcctatcaac 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 ctcttggtaaagttgcacataatgcacatgcttctttccctccctcagtttcctatcaac 473
Query: 637 ctcctcttcctgctcctaggtcaaatattgaggtgcatcatggtccaggggtagttcctt 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ctcctcttcctgctcctaggtcaaatattgaggtgcatcatggtccaggggtagttcctt 413
Query: 697 ctcctttcaccttacaaccaaatgcttctggcggttcttttattccttctgtacaatctg 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ctcctttcaccttacaaccaaatgcttctggcggttcttttattccttctgtacaatctg 353
Query: 757 gtattgtttcatttcaaagtttccggggtggtgttgagtcattacatcaagaagcactag 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 gtattgtttcatttcaaagtttccggggtggtgttgagtcattacatcaagaagcactag 293
Query: 817 ctccaaatccttggggtggatcattcccaccatcctcattagggccaaaatctccaatga 876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ctccaaatccttggggtggatcattcccaccatcctcattagggccaaaatctccaatga 233
Query: 877 agaggccataccaccgcata 896
||||||||||||||||||||
Sbjct: 232 agaggccataccaccgcata 213
>KMC002840A_C01 KMC002840A_c01
Length = 517
Score = 54.0 bits (27), Expect = 2e-07
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 669 gtgcatcatggtccaggggtagttccttctcctttcaccttacaacc 715
|||||| |||||| |||| |||||||||||||||||||| ||||||
Sbjct: 479 gtgcataatggtctagggacagttccttctcctttcacctcacaacc 433
Score = 46.1 bits (23), Expect = 6e-05
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 780 cggggtggtgttgagtcattacatcaagaagcactagctccaa 822
|||||||||||| ||||||| ||||||||||| | |||||||
Sbjct: 395 cggggtggtgttcagtcattgaatcaagaagcagtggctccaa 353
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3457
Number of Sequences: 8469
Number of extensions: 3457
Number of successful extensions: 917
Number of sequences better than 1.0e-03: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 912
Number of HSP's gapped (non-prelim): 5
length of query: 896
length of database: 5,164,774
effective HSP length: 16
effective length of query: 880
effective length of database: 5,029,270
effective search space: 4425757600
effective search space used: 4425757600
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)