Miyakogusa Predicted Gene
- chr1.CM0442.250.nd
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr1.CM0442.250.nd - phase: 0 /est
(529 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC001221A_C01 KMC001221A_c01 989 0.0
>KMC001221A_C01 KMC001221A_c01
Length = 516
Score = 989 bits (499), Expect = 0.0
Identities = 508/511 (99%)
Strand = Plus / Minus
Query: 19 agagacaggtcaggatcatcatccaggagccccgatggaaagaaaggcctggtatcctat 78
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 agagacagctcaggatcatcatccaggagccccgatggaaagaaaggcctggtatcctat 457
Query: 79 ggcgatggttctccctactcaggtcagaggtgaaattgttgtccagagggtacttcaatt 138
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ggcgatggttctcctaactcaggtcagaggtgaaattgttgtccagagggtacttcaatt 397
Query: 139 tggtgaaatactgttgttaccttcaatgagctcgaggctttcaatttttgaacatcacct 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tggtgaaatactgttgttaccttcaatgagctcgaggctttcaatttttgaacatcacct 337
Query: 199 gcgactttggttgcatgctggaatccgtgaatgtcacttctatggactgagatggcttgt 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gcgactttggttgcatgctggaatccgtgaatgtcacttctatggactgagatggcttgt 277
Query: 259 tgaacaattctaggactagaataagttataggcggtacttatgaacatttggcacagcct 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 tgaacaattctaggactagaataagttataggcggtacttatgaacatttggcacagcct 217
Query: 319 tagttgtggagttattgcagttattgcggtatttgttggagttggagacttttggatgtt 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 tagttgtggagttattgcagttattgcggtatttgttggagttggagacttttggatgtt 157
Query: 379 gttgcttagttgtctgttaagcatgagttgagtttataaatttttggttcgtgtcagtag 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 gttgcttagttgtctgttaagcatgagttgagtttataaatttttggttcgtgtcagtag 97
Query: 439 atttgttccatactacccagcttacagatgatggttactacttttaattaggataatcag 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 atttgttccatactacccagcttacagatgatggttactacttttaattaggataatcag 37
Query: 499 tttattatggtattttcgatattgctattct 529
|||||||||||||||||||||||||||||||
Sbjct: 36 tttattatggtattttcgatattgctattct 6
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1730
Number of Sequences: 8469
Number of extensions: 1730
Number of successful extensions: 452
Number of sequences better than 1.0e-03: 1
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 451
Number of HSP's gapped (non-prelim): 1
length of query: 529
length of database: 5,164,774
effective HSP length: 16
effective length of query: 513
effective length of database: 5,029,270
effective search space: 2580015510
effective search space used: 2580015510
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)