Miyakogusa Predicted Gene

CM0385.340.nd
Show Alignment:  

BLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= CM0385.340.nd - phase: 0 
         (1596 letters)

Database: lotus_consensus 
           8469 sequences; 5,164,774 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KMC014706A_C01 KMC014706A_c01                                         113   5e-25

>KMC014706A_C01 KMC014706A_c01
          Length = 503

 Score =  113 bits (57), Expect = 5e-25
 Identities = 117/137 (85%)
 Strand = Plus / Minus

                                                                        
Query: 1372 aacttgtatgctcagttgatagatgaagctgagggattggaaaagattgaaaacctgcag 1431
            ||||||||||||||| |||| || || ||||| |||||||| ||||| || |||||||| 
Sbjct: 503  aacttgtatgctcagatgattgaggatgctgacggattggagaagatagataacctgcaa 444

                                                                        
Query: 1432 agccatgacaacaatgaaatatatgagaaggctgttaaaatcctcgagacatattggttg 1491
            |  ||||||||||| |||||||||||||||| ||||||||| || || ||||| ||||  
Sbjct: 443  aatcatgacaacaacgaaatatatgagaaggttgttaaaattcttgaaacatactggtca 384

                             
Query: 1492 gaagatgaagatgagac 1508
            ||||||| |||||||||
Sbjct: 383  gaagatgtagatgagac 367


  Database: lotus_consensus
    Posted date:  Nov 10, 2006  2:59 PM
  Number of letters in database: 5,164,774
  Number of sequences in database:  8469
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5027
Number of Sequences: 8469
Number of extensions: 5027
Number of successful extensions: 1422
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1420
Number of HSP's gapped (non-prelim): 2
length of query: 1596
length of database: 5,164,774
effective HSP length: 17
effective length of query: 1579
effective length of database: 5,020,801
effective search space: 7927844779
effective search space used: 7927844779
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)