Miyakogusa Predicted Gene
- chr6.LjT16B20.40.nc
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr6.LjT16B20.40.nc - phase: 0
(478 letters)
Database: TAIR8_pep
32,825 sequences; 13,166,001 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G07810.1 | Symbols: | heterogeneous nuclear ribonucleoprotei... 395 e-110
AT3G07810.2 | Symbols: | heterogeneous nuclear ribonucleoprotei... 395 e-110
AT4G26650.2 | Symbols: | RNA recognition motif (RRM)-containing... 353 2e-97
AT4G26650.1 | Symbols: | RNA recognition motif (RRM)-containing... 352 2e-97
AT5G47620.2 | Symbols: | heterogeneous nuclear ribonucleoprotei... 344 6e-95
AT5G47620.1 | Symbols: | heterogeneous nuclear ribonucleoprotei... 344 6e-95
AT5G55550.1 | Symbols: | RNA recognition motif (RRM)-containing... 332 4e-91
AT5G55550.2 | Symbols: | RNA recognition motif (RRM)-containing... 327 1e-89
AT5G55550.3 | Symbols: | RNA recognition motif (RRM)-containing... 327 1e-89
AT4G14300.1 | Symbols: | heterogeneous nuclear ribonucleoprotei... 231 7e-61
AT5G47620.3 | Symbols: | heterogeneous nuclear ribonucleoprotei... 225 6e-59
AT1G17640.1 | Symbols: | RNA recognition motif (RRM)-containing... 184 9e-47
AT1G58470.1 | Symbols: RBP1, XF41, ATRBP1 | ATRBP1 (ARABIDOPSIS ... 176 2e-44
AT3G13224.2 | Symbols: | RNA recognition motif (RRM)-containing... 169 3e-42
AT5G40490.1 | Symbols: | RNA recognition motif (RRM)-containing... 156 2e-38
AT3G13224.1 | Symbols: | RNA recognition motif (RRM)-containing... 154 1e-37
AT4G36960.1 | Symbols: | RNA recognition motif (RRM)-containing... 143 3e-34
AT1G33470.2 | Symbols: | RNA recognition motif (RRM)-containing... 89 8e-18
AT1G33470.1 | Symbols: | RNA recognition motif (RRM)-containing... 89 8e-18
AT1G76460.1 | Symbols: | RNA recognition motif (RRM)-containing... 86 5e-17
AT1G20880.1 | Symbols: | RNA recognition motif (RRM)-containing... 86 7e-17
AT3G15010.2 | Symbols: | RNA recognition motif (RRM)-containing... 83 4e-16
AT3G15010.1 | Symbols: | RNA recognition motif (RRM)-containing... 83 4e-16
AT1G22330.1 | Symbols: | RNA binding | chr1:7886682-7889230 FOR... 82 1e-15
AT4G24770.1 | Symbols: ATRBP31, CP31, ATRBP33, RBP31 | RBP31 (31... 81 2e-15
AT1G78260.1 | Symbols: | RNA recognition motif (RRM)-containing... 80 3e-15
AT2G46780.1 | Symbols: | RNA recognition motif (RRM)-containing... 79 6e-15
AT1G78260.2 | Symbols: | RNA recognition motif (RRM)-containing... 79 6e-15
AT4G16280.2 | Symbols: FCA | FCA; RNA binding | chr4:9207180-921... 78 1e-14
AT4G16280.3 | Symbols: FCA | FCA; RNA binding | chr4:9208580-921... 78 1e-14
AT3G52380.1 | Symbols: PDE322, CP33 | CP33 (PIGMENT DEFECTIVE 32... 76 6e-14
AT1G22910.1 | Symbols: | RNA recognition motif (RRM)-containing... 75 8e-14
AT2G37220.1 | Symbols: | 29 kDa ribonucleoprotein, chloroplast,... 75 8e-14
AT1G22910.2 | Symbols: | RNA recognition motif (RRM)-containing... 75 9e-14
AT2G36660.1 | Symbols: PAB7 | PAB7 (POLY(A) BINDING PROTEIN 7); ... 75 1e-13
AT1G22910.3 | Symbols: | RNA recognition motif (RRM)-containing... 75 1e-13
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | GR-RBP4/GRP4 (GLYCINE-RIC... 74 2e-13
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | GR-RBP4/GRP4 (GLYCINE-RIC... 74 2e-13
AT4G00830.2 | Symbols: | RNA recognition motif (RRM)-containing... 74 3e-13
AT4G00830.1 | Symbols: | RNA recognition motif (RRM)-containing... 74 3e-13
AT4G13850.4 | Symbols: GR-RBP2, GRP2, ATGRP2 | ATGRP2 (GLYCINE-R... 73 3e-13
AT4G13850.3 | Symbols: GR-RBP2, GRP2, ATGRP2 | ATGRP2 (GLYCINE-R... 73 4e-13
AT4G13850.2 | Symbols: GR-RBP2, GRP2, ATGRP2 | ATGRP2 (GLYCINE-R... 73 4e-13
AT4G13850.1 | Symbols: GR-RBP2, GRP2, ATGRP2 | ATGRP2 (GLYCINE-R... 73 4e-13
AT3G56860.2 | Symbols: UBA2A | UBA2A; AU-rich element binding / ... 72 6e-13
AT3G56860.1 | Symbols: UBA2A | UBA2A; RNA binding | chr3:2106168... 72 6e-13
AT3G56860.3 | Symbols: UBA2A | UBA2A; RNA binding | chr3:2106168... 72 6e-13
AT3G54770.1 | Symbols: | RNA recognition motif (RRM)-containing... 72 6e-13
AT4G39260.3 | Symbols: GR-RBP8, ATGRP8, CCR1 | ATGRP8/GR-RBP8 (C... 72 8e-13
AT5G50250.1 | Symbols: | 31 kDa ribonucleoprotein, chloroplast,... 72 9e-13
AT5G11412.1 | Symbols: | nucleic acid binding / nucleotide bind... 71 1e-12
AT1G60650.2 | Symbols: | glycine-rich RNA-binding protein, puta... 70 4e-12
AT1G60650.1 | Symbols: | glycine-rich RNA-binding protein, puta... 70 4e-12
AT2G23350.1 | Symbols: PAB4 | PAB4 (POLY(A) BINDING PROTEIN 4); ... 70 4e-12
AT4G39260.2 | Symbols: GR-RBP8, ATGRP8, CCR1 | ATGRP8/GR-RBP8 (C... 69 5e-12
AT4G39260.1 | Symbols: GR-RBP8, ATGRP8, CCR1 | ATGRP8/GR-RBP8 (C... 69 5e-12
AT3G26420.1 | Symbols: ATRZ-1A | ATRZ-1A; RNA binding / nucleoti... 69 7e-12
AT2G41060.2 | Symbols: | RNA recognition motif (RRM)-containing... 69 7e-12
AT2G41060.1 | Symbols: | RNA recognition motif (RRM)-containing... 69 7e-12
AT5G61030.1 | Symbols: GR-RBP3 | GR-RBP3 (glycine-rich RNA-bindi... 69 7e-12
AT1G49760.1 | Symbols: PAB8 | PAB8 (POLY(A) BINDING PROTEIN 8); ... 69 9e-12
AT4G34110.1 | Symbols: PABP2, PAB2 | PAB2 (POLY(A) BINDING PROTE... 68 1e-11
AT5G06210.1 | Symbols: | RNA-binding protein, putative | chr5:1... 68 2e-11
AT2G21660.1 | Symbols: GR-RBP7, GRP7, CCR2, ATGRP7 | ATGRP7 (COL... 66 5e-11
AT4G39260.4 | Symbols: GR-RBP8, ATGRP8, CCR1 | ATGRP8/GR-RBP8 (C... 66 5e-11
AT5G04280.1 | Symbols: | glycine-rich RNA-binding protein | chr... 65 8e-11
AT5G53720.1 | Symbols: | RNA recognition motif (RRM)-containing... 65 9e-11
AT1G74230.1 | Symbols: GR-RBP5 | GR-RBP5 (glycine-rich RNA-bindi... 65 1e-10
AT2G21660.2 | Symbols: GR-RBP7, GRP7, CCR2, ATGRP7 | ATGRP7 (COL... 64 2e-10
AT1G18630.1 | Symbols: GR-RBP6 | GR-RBP6 (glycine-rich RNA-bindi... 64 2e-10
AT1G01080.1 | Symbols: | 33 kDa ribonucleoprotein, chloroplast,... 64 2e-10
AT3G52150.2 | Symbols: | RNA recognition motif (RRM)-containing... 63 3e-10
AT3G52150.1 | Symbols: | RNA recognition motif (RRM)-containing... 63 3e-10
AT1G47490.1 | Symbols: ATRBP47C | ATRBP47C; RNA binding | chr1:1... 63 3e-10
AT4G27000.1 | Symbols: ATRBP45C | ATRBP45C; RNA binding | chr4:1... 63 3e-10
AT3G06970.1 | Symbols: | RNA binding | chr3:2199659-2201156 REV... 63 5e-10
AT3G16380.1 | Symbols: PAB6 | PAB6 (POLY(A) BINDING PROTEIN 6); ... 62 5e-10
AT1G34140.1 | Symbols: PAB1 | PAB1 (POLY(A) BINDING PROTEIN 1); ... 62 6e-10
AT5G53680.1 | Symbols: | RNA recognition motif (RRM)-containing... 62 7e-10
AT3G08000.1 | Symbols: | RNA-binding protein, putative | chr3:2... 62 7e-10
AT1G47500.1 | Symbols: ATRBP47C' | ATRBP47C' (RNA-BINDING PROTEI... 62 7e-10
AT4G13860.1 | Symbols: | glycine-rich RNA-binding protein, puta... 62 7e-10
AT1G01080.2 | Symbols: | 33 kDa ribonucleoprotein, chloroplast,... 62 9e-10
AT3G46020.1 | Symbols: | RNA-binding protein, putative | chr3:1... 61 2e-09
AT5G08695.1 | Symbols: | nucleic acid binding / nucleotide bind... 60 3e-09
AT5G54900.1 | Symbols: ATRBP45A | ATRBP45A (RNA-BINDING PROTEIN ... 60 3e-09
AT1G03457.2 | Symbols: | RNA-binding protein, putative | chr1:8... 60 4e-09
AT1G03457.1 | Symbols: | RNA-binding protein, putative | chr1:8... 59 5e-09
AT1G22760.1 | Symbols: PAB3 | PAB3 (POLY(A) BINDING PROTEIN 3); ... 59 6e-09
AT1G60000.1 | Symbols: | 29 kDa ribonucleoprotein, chloroplast,... 59 6e-09
AT1G71770.1 | Symbols: PAB5 | PAB5 (POLY(A)-BINDING PROTEIN); RN... 58 1e-08
AT2G22090.1 | Symbols: UBA1A | UBA1A; AU-rich element binding / ... 58 1e-08
AT2G22090.2 | Symbols: UBA1A | UBA1A; RNA binding | chr2:9396487... 58 1e-08
AT2G22100.1 | Symbols: | RNA recognition motif (RRM)-containing... 58 1e-08
AT1G11650.2 | Symbols: ATRBP45B | ATRBP45B; RNA binding | chr1:3... 57 2e-08
AT1G54080.1 | Symbols: UBP1A | UBP1A; mRNA 3'-UTR binding | chr1... 57 4e-08
AT3G14100.1 | Symbols: | oligouridylate-binding protein, putati... 56 4e-08
AT2G18510.1 | Symbols: EMB2444 | EMB2444 (EMBRYO DEFECTIVE 2444)... 56 6e-08
AT5G04810.1 | Symbols: | pentatricopeptide (PPR) repeat-contain... 55 7e-08
AT2G37510.1 | Symbols: | RNA-binding protein, putative | chr2:1... 55 8e-08
AT1G48920.1 | Symbols: ATNUC-L1, PARL1 | ATNUC-L1/PARL1 (PARALLE... 55 8e-08
AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containing... 55 9e-08
AT1G49600.1 | Symbols: ATRBP47A | ATRBP47A (ARABIDOPSIS THALIANA... 55 1e-07
AT3G13570.1 | Symbols: SCL30a | SCL30a (SC35-like splicing facto... 55 1e-07
AT5G54580.1 | Symbols: | RNA recognition motif (RRM)-containing... 55 1e-07
AT2G27330.1 | Symbols: | RNA recognition motif (RRM)-containing... 54 2e-07
AT1G55310.2 | Symbols: ATSCL33, SCL33, SR33 | SR33 (SC35-like sp... 54 2e-07
AT1G55310.1 | Symbols: ATSCL33, SCL33, SR33 | SR33 (SC35-like sp... 54 2e-07
AT3G53460.2 | Symbols: CP29 | CP29 (chloroplast 29 kDa ribonucle... 53 3e-07
AT3G53460.1 | Symbols: CP29 | CP29 (chloroplast 29 kDa ribonucle... 53 3e-07
AT4G19610.1 | Symbols: | RNA binding | chr4:10677492-10681633 F... 53 4e-07
AT2G16940.1 | Symbols: | RNA recognition motif (RRM)-containing... 52 6e-07
AT2G21690.1 | Symbols: | RNA-binding protein, putative | chr2:9... 52 6e-07
AT1G07350.1 | Symbols: | transformer serine/arginine-rich ribon... 52 7e-07
AT1G11650.1 | Symbols: ATRBP45B | ATRBP45B; RNA binding | chr1:3... 52 7e-07
AT1G60900.1 | Symbols: | U2 snRNP auxiliary factor large subuni... 52 8e-07
AT5G47320.1 | Symbols: RPS19 | RPS19 (40S ribosomal protein S19)... 52 1e-06
AT5G51300.3 | Symbols: | splicing factor-related | chr5:2086710... 52 1e-06
AT5G51300.2 | Symbols: | splicing factor-related | chr5:2086710... 52 1e-06
AT5G51300.1 | Symbols: | splicing factor-related | chr5:2086710... 52 1e-06
AT1G54080.2 | Symbols: UBP1A | UBP1A; mRNA 3'-UTR binding | chr1... 51 2e-06
AT1G73530.1 | Symbols: | RNA recognition motif (RRM)-containing... 51 2e-06
AT1G71800.1 | Symbols: | cleavage stimulation factor, putative ... 51 2e-06
AT2G47310.1 | Symbols: | flowering time control protein-related... 49 5e-06
AT1G17370.2 | Symbols: UBP1B | UBP1B (OLIGOURIDYLATE BINDING PRO... 49 5e-06
AT1G17370.1 | Symbols: UBP1B | UBP1B (OLIGOURIDYLATE BINDING PRO... 49 6e-06
AT3G54770.2 | Symbols: | RNA recognition motif (RRM)-containing... 49 7e-06
AT3G20930.1 | Symbols: | RNA recognition motif (RRM)-containing... 48 1e-05
AT3G18610.1 | Symbols: ATRANGAP1 | ATRANGAP1 (RAN GTPASE-ACTIVAT... 48 1e-05
AT3G55340.1 | Symbols: | RNA recognition motif (RRM)-containing... 47 2e-05
AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing... 47 2e-05
AT4G36690.3 | Symbols: ATU2AF65A | ATU2AF65A; RNA binding | chr4... 47 3e-05
AT1G07350.2 | Symbols: | transformer serine/arginine-rich ribon... 47 3e-05
AT5G59860.1 | Symbols: | RNA recognition motif (RRM)-containing... 47 3e-05
AT4G36690.1 | Symbols: ATU2AF65A | ATU2AF65A; RNA binding | chr4... 47 3e-05
AT4G36690.2 | Symbols: ATU2AF65A | ATU2AF65A; RNA binding | chr4... 47 3e-05
AT1G16610.1 | Symbols: SR45 | SR45 (arginine/serine-rich 45); RN... 47 3e-05
AT1G16610.2 | Symbols: SR45 | SR45 (arginine/serine-rich 45); RN... 47 3e-05
AT1G13690.1 | Symbols: ATE1 | ATE1 (ATPase E1); nucleic acid bin... 47 3e-05
AT5G09880.1 | Symbols: | RNA recognition motif (RRM)-containing... 47 4e-05
AT2G44710.1 | Symbols: | RNA recognition motif (RRM)-containing... 46 4e-05
AT5G64200.2 | Symbols: ATSC35 | ATSC35 (ARABIDOPSIS THALIANA ARG... 46 5e-05
AT5G64200.1 | Symbols: ATSC35 | ATSC35 (ARABIDOPSIS THALIANA ARG... 46 5e-05
AT5G04600.1 | Symbols: | RNA recognition motif (RRM)-containing... 46 5e-05
AT3G55460.1 | Symbols: SCL30 | SCL30 (SC35-like splicing factor ... 46 6e-05
AT5G18810.1 | Symbols: SCL28 | SCL28 (SC35-like splicing factor ... 45 8e-05
AT4G20030.1 | Symbols: | RNA recognition motif (RRM)-containing... 45 1e-04
AT2G43370.1 | Symbols: | U1 small nuclear ribonucleoprotein 70 ... 44 2e-04
AT1G07360.1 | Symbols: | zinc finger (CCCH-type) family protein... 44 2e-04
AT3G52660.2 | Symbols: | RNA recognition motif (RRM)-containing... 44 2e-04
AT3G52660.1 | Symbols: | RNA recognition motif (RRM)-containing... 44 2e-04
AT5G19960.1 | Symbols: | RNA recognition motif (RRM)-containing... 44 2e-04
AT5G19030.2 | Symbols: | RNA recognition motif (RRM)-containing... 44 3e-04
AT5G51120.1 | Symbols: PABN1, ATPABN1 | ATPABN1/PABN1 (polyadeny... 43 3e-04
AT5G65260.1 | Symbols: | polyadenylate-binding protein family p... 43 4e-04
AT1G47490.2 | Symbols: ATRBP47C | ATRBP47C; RNA binding | chr1:1... 43 4e-04
AT4G03110.1 | Symbols: | RNA-binding protein, putative | chr4:1... 43 5e-04
AT2G35410.1 | Symbols: | 33 kDa ribonucleoprotein, chloroplast,... 42 7e-04
AT5G19030.1 | Symbols: | RNA recognition motif (RRM)-containing... 42 7e-04
AT3G11400.1 | Symbols: ATEIF3G1, EIF3G1 | EIF3G1 (eukaryotic tra... 42 8e-04
>AT3G07810.1 | Symbols: | heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative | chr3:2492881-2495058
FORWARD
Length = 494
Score = 395 bits (1015), Expect = e-110, Method: Compositional matrix adjust.
Identities = 203/318 (63%), Positives = 236/318 (74%), Gaps = 4/318 (1%)
Query: 2 DPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERV 61
D GKLFIGGISWDTNEERL++YF +FG+V+EAVI+KDRTTGRARGFGFVVFADP+VAE V
Sbjct: 4 DNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIV 63
Query: 62 VMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESD 121
+ EKH IDGR VEAKKAVPRDDQN RT+KIFVGGLPS++TESD
Sbjct: 64 ITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESD 123
Query: 122 FKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKRA 181
FK YF+QFGT TDVVVMYDHNTQRPRGFGFIT+DSEE VEKVL KTFHELNGKMVEVKRA
Sbjct: 124 FKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRA 183
Query: 182 VPKELSPSPSRGQLG-GYSYAMSRVGSFANGFTQGYNPGMVGGHGLRIDGRLSPVTVGRS 240
VPKELSP PSR LG GYSY ++RV + NG+ QG+NP VGG+GLR+DGR SPV GRS
Sbjct: 184 VPKELSPGPSRSPLGAGYSYGVNRVNNLLNGYAQGFNPAAVGGYGLRMDGRFSPVGAGRS 243
Query: 241 GYPLLSPNYGSELNFE--LPLSQNESANFTSNFVIGRALNSSYNGSPSRYNNAMGYAGSS 298
G+ S YG +NF+ LP N+ N GR ++ Y G+ +R+ A+GY
Sbjct: 244 GFANYSSGYGMNVNFDQGLPTGFTGGTNYNGNVDYGRGMSPYYIGNTNRFGPAVGYE-GG 302
Query: 299 IGNNATISSSSINQNLWG 316
G + SS+ +NLWG
Sbjct: 303 NGGGNSSFFSSVTRNLWG 320
>AT3G07810.2 | Symbols: | heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative | chr3:2492881-2495108
FORWARD
Length = 495
Score = 395 bits (1014), Expect = e-110, Method: Compositional matrix adjust.
Identities = 203/318 (63%), Positives = 236/318 (74%), Gaps = 4/318 (1%)
Query: 2 DPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERV 61
D GKLFIGGISWDTNEERL++YF +FG+V+EAVI+KDRTTGRARGFGFVVFADP+VAE V
Sbjct: 4 DNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIV 63
Query: 62 VMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESD 121
+ EKH IDGR VEAKKAVPRDDQN RT+KIFVGGLPS++TESD
Sbjct: 64 ITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESD 123
Query: 122 FKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKRA 181
FK YF+QFGT TDVVVMYDHNTQRPRGFGFIT+DSEE VEKVL KTFHELNGKMVEVKRA
Sbjct: 124 FKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRA 183
Query: 182 VPKELSPSPSRGQLG-GYSYAMSRVGSFANGFTQGYNPGMVGGHGLRIDGRLSPVTVGRS 240
VPKELSP PSR LG GYSY ++RV + NG+ QG+NP VGG+GLR+DGR SPV GRS
Sbjct: 184 VPKELSPGPSRSPLGAGYSYGVNRVNNLLNGYAQGFNPAAVGGYGLRMDGRFSPVGAGRS 243
Query: 241 GYPLLSPNYGSELNFE--LPLSQNESANFTSNFVIGRALNSSYNGSPSRYNNAMGYAGSS 298
G+ S YG +NF+ LP N+ N GR ++ Y G+ +R+ A+GY
Sbjct: 244 GFANYSSGYGMNVNFDQGLPTGFTGGTNYNGNVDYGRGMSPYYIGNTNRFGPAVGYE-GG 302
Query: 299 IGNNATISSSSINQNLWG 316
G + SS+ +NLWG
Sbjct: 303 NGGGNSSFFSSVTRNLWG 320
>AT4G26650.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:13445271-13447598 FORWARD
Length = 452
Score = 353 bits (905), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 233/503 (46%), Positives = 289/503 (57%), Gaps = 86/503 (17%)
Query: 2 DPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERV 61
D GKLFIGGISWDT+EERL++YF +GD+VEAVIM+DRTTGRARGFGF+VFADPSVAERV
Sbjct: 10 DLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERV 69
Query: 62 VMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXX-----XRTKKIFVGGLPST 116
+M+KH+IDGRTVEAKKAVPRDDQ RTKKIFVGGLPS+
Sbjct: 70 IMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSS 129
Query: 117 ITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMV 176
ITE++FKNYFDQFGTI DVVVMYDHNTQRPRGFGFITFDSEE V+ VL+KTFHELNGKMV
Sbjct: 130 ITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMV 189
Query: 177 EVKRAVPKELSP-SPSRGQLGGY--SYAM----SRVGSFANGFTQGYNPGMVGGHGLRID 229
EVKRAVPKELS +P+R L GY +Y + S S+ N F GYN +G
Sbjct: 190 EVKRAVPKELSSTTPNRSPLIGYGNNYGVVPNRSSANSYFNSFPPGYNNNNLGSA----- 244
Query: 230 GRLSPVTVGRSGYPLLSPNYGSELNFELPLSQNESANFT--SNFVIGRALNSSYNGSPSR 287
GR SP+ GR+ + ++G LN EL L+ N N S + NS+ SP+R
Sbjct: 245 GRFSPIGSGRNAF----SSFGLGLNQELNLNSNFDGNTLGYSRIPGNQYFNSA---SPNR 297
Query: 288 YNNAMGYAGSSIGNNATISSSSINQNLWGNGNLYGATNPATSNAFVGYGSENXXXXXXXX 347
YN+ +GY N + + N++LWG
Sbjct: 298 YNSPIGY------NRGDSAYNPSNRDLWG------------------------------- 320
Query: 348 XXXXXXXXXXNNQAGTIGSGYGKG-SLSYRSGDVILGSKTVD---YGRSSESTVASAPLY 403
N++ + G G+ G S+ G+ L S D YGRS + + L
Sbjct: 321 -----------NRSDSSGPGWNLGVSVGNNRGNWGLSSVVSDNNGYGRSYGAGSGLSGLS 369
Query: 404 TLSNGN-YDEAFKDTYEAGPFYRDQTWR------SSASELDD-SGSLGLGFENAVSDLMS 455
N N +D + + Y Y D TW+ S++ELD S S G G +N SD +
Sbjct: 370 FAGNTNGFDGSIGELYRGSSVYSDSTWQQSMPHHQSSNELDGLSRSYGFGIDNVGSDPSA 429
Query: 456 KGSGGHIGAYAVASRQSNRGIAA 478
S G+ G Y V +RQ++RGI A
Sbjct: 430 NASEGYSGNYNVGNRQTHRGIEA 452
>AT4G26650.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:13445558-13447598 FORWARD
Length = 455
Score = 352 bits (904), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 233/503 (46%), Positives = 289/503 (57%), Gaps = 86/503 (17%)
Query: 2 DPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERV 61
D GKLFIGGISWDT+EERL++YF +GD+VEAVIM+DRTTGRARGFGF+VFADPSVAERV
Sbjct: 13 DLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERV 72
Query: 62 VMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXX-----XRTKKIFVGGLPST 116
+M+KH+IDGRTVEAKKAVPRDDQ RTKKIFVGGLPS+
Sbjct: 73 IMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSS 132
Query: 117 ITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMV 176
ITE++FKNYFDQFGTI DVVVMYDHNTQRPRGFGFITFDSEE V+ VL+KTFHELNGKMV
Sbjct: 133 ITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKMV 192
Query: 177 EVKRAVPKELSP-SPSRGQLGGY--SYAM----SRVGSFANGFTQGYNPGMVGGHGLRID 229
EVKRAVPKELS +P+R L GY +Y + S S+ N F GYN +G
Sbjct: 193 EVKRAVPKELSSTTPNRSPLIGYGNNYGVVPNRSSANSYFNSFPPGYNNNNLGSA----- 247
Query: 230 GRLSPVTVGRSGYPLLSPNYGSELNFELPLSQNESANFT--SNFVIGRALNSSYNGSPSR 287
GR SP+ GR+ + ++G LN EL L+ N N S + NS+ SP+R
Sbjct: 248 GRFSPIGSGRNAF----SSFGLGLNQELNLNSNFDGNTLGYSRIPGNQYFNSA---SPNR 300
Query: 288 YNNAMGYAGSSIGNNATISSSSINQNLWGNGNLYGATNPATSNAFVGYGSENXXXXXXXX 347
YN+ +GY N + + N++LWG
Sbjct: 301 YNSPIGY------NRGDSAYNPSNRDLWG------------------------------- 323
Query: 348 XXXXXXXXXXNNQAGTIGSGYGKG-SLSYRSGDVILGSKTVD---YGRSSESTVASAPLY 403
N++ + G G+ G S+ G+ L S D YGRS + + L
Sbjct: 324 -----------NRSDSSGPGWNLGVSVGNNRGNWGLSSVVSDNNGYGRSYGAGSGLSGLS 372
Query: 404 TLSNGN-YDEAFKDTYEAGPFYRDQTWR------SSASELDD-SGSLGLGFENAVSDLMS 455
N N +D + + Y Y D TW+ S++ELD S S G G +N SD +
Sbjct: 373 FAGNTNGFDGSIGELYRGSSVYSDSTWQQSMPHHQSSNELDGLSRSYGFGIDNVGSDPSA 432
Query: 456 KGSGGHIGAYAVASRQSNRGIAA 478
S G+ G Y V +RQ++RGI A
Sbjct: 433 NASEGYSGNYNVGNRQTHRGIEA 455
>AT5G47620.2 | Symbols: | heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative | chr5:19319774-19321504
REVERSE
Length = 431
Score = 344 bits (883), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 211/483 (43%), Positives = 277/483 (57%), Gaps = 59/483 (12%)
Query: 1 MDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAER 60
M+ KLFIGGISW+T+E+RLR YF +FG+V+EAVIMKDR TGRARGFGFVVFADP+VAER
Sbjct: 3 MESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAER 62
Query: 61 VVMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITES 120
VV+ KH+IDG+ VEAKKAVPRDD +KKIFVGGL S++TE+
Sbjct: 63 VVLLKHIIDGKIVEAKKAVPRDDH--VVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEA 120
Query: 121 DFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKR 180
+FK YF QFG ITDVVVMYDH TQRPRGFGFI++DSEE V+KVL KTFHELNGKMVEVK
Sbjct: 121 EFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKL 180
Query: 181 AVPKELSPSPSRGQLGGYSYAMSRVGSFANGFTQGYNPGMVGGHGLRIDGRLSPVTVGRS 240
AVPK+++ + R Q+ S+ SR+ S N +TQG++P + G+G++ + R SP R
Sbjct: 181 AVPKDMALNTMRNQMNVNSFGTSRISSLLNEYTQGFSPSPISGYGVKPEVRYSPAVGNRG 240
Query: 241 GYPLLSPNYGSELNFELPLSQNESANFTSNFVIGRALNSSYNGSPSRYNNAMGYAGSSIG 300
G+ YG ELNFE +QN + + F R + Y S R+ + M G+S+G
Sbjct: 241 GFSPFGHGYGIELNFEPNQTQNYGSGSSGGFG--RPFSPGYAASLGRFGSQMESGGASVG 298
Query: 301 NNATISSSSINQNLWGNGNL-YGATNPATSNAFVGYGSENXXXXXXXXXXXXXXXXXXNN 359
N + ++++ N LWGNG L Y + +P + ++F G +
Sbjct: 299 NGSVLNAAPKNH-LWGNGGLGYMSNSPISRSSFSG--------------------NSGMS 337
Query: 360 QAGTIGSGYGKGSLSYRSGDVILGSKTVDYGRSS----ESTVASAPLYTLSNGNYDEAFK 415
G+IG +G TV RSS V + + G Y
Sbjct: 338 SLGSIGDNWG----------------TVARARSSYHGERGGVGLEAMRGVHVGGYSSG-S 380
Query: 416 DTYEAGPFYRDQTWRSSASELDDSGSLGLGFENAVSDLMSKGSGGHIGAYAVASRQSNRG 475
EA Y D W S ++ ++ LG+G D MS+G G+I +RQ N G
Sbjct: 381 SILEADSLYSDSMWLSLPAKAEE--GLGMG----PLDFMSRGPAGYI------NRQPNGG 428
Query: 476 IAA 478
IAA
Sbjct: 429 IAA 431
>AT5G47620.1 | Symbols: | heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative | chr5:19319774-19321504
REVERSE
Length = 431
Score = 344 bits (883), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 211/483 (43%), Positives = 277/483 (57%), Gaps = 59/483 (12%)
Query: 1 MDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAER 60
M+ KLFIGGISW+T+E+RLR YF +FG+V+EAVIMKDR TGRARGFGFVVFADP+VAER
Sbjct: 3 MESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAER 62
Query: 61 VVMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITES 120
VV+ KH+IDG+ VEAKKAVPRDD +KKIFVGGL S++TE+
Sbjct: 63 VVLLKHIIDGKIVEAKKAVPRDDH--VVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEA 120
Query: 121 DFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKR 180
+FK YF QFG ITDVVVMYDH TQRPRGFGFI++DSEE V+KVL KTFHELNGKMVEVK
Sbjct: 121 EFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKL 180
Query: 181 AVPKELSPSPSRGQLGGYSYAMSRVGSFANGFTQGYNPGMVGGHGLRIDGRLSPVTVGRS 240
AVPK+++ + R Q+ S+ SR+ S N +TQG++P + G+G++ + R SP R
Sbjct: 181 AVPKDMALNTMRNQMNVNSFGTSRISSLLNEYTQGFSPSPISGYGVKPEVRYSPAVGNRG 240
Query: 241 GYPLLSPNYGSELNFELPLSQNESANFTSNFVIGRALNSSYNGSPSRYNNAMGYAGSSIG 300
G+ YG ELNFE +QN + + F R + Y S R+ + M G+S+G
Sbjct: 241 GFSPFGHGYGIELNFEPNQTQNYGSGSSGGFG--RPFSPGYAASLGRFGSQMESGGASVG 298
Query: 301 NNATISSSSINQNLWGNGNL-YGATNPATSNAFVGYGSENXXXXXXXXXXXXXXXXXXNN 359
N + ++++ N LWGNG L Y + +P + ++F G +
Sbjct: 299 NGSVLNAAPKNH-LWGNGGLGYMSNSPISRSSFSG--------------------NSGMS 337
Query: 360 QAGTIGSGYGKGSLSYRSGDVILGSKTVDYGRSS----ESTVASAPLYTLSNGNYDEAFK 415
G+IG +G TV RSS V + + G Y
Sbjct: 338 SLGSIGDNWG----------------TVARARSSYHGERGGVGLEAMRGVHVGGYSSG-S 380
Query: 416 DTYEAGPFYRDQTWRSSASELDDSGSLGLGFENAVSDLMSKGSGGHIGAYAVASRQSNRG 475
EA Y D W S ++ ++ LG+G D MS+G G+I +RQ N G
Sbjct: 381 SILEADSLYSDSMWLSLPAKAEE--GLGMG----PLDFMSRGPAGYI------NRQPNGG 428
Query: 476 IAA 478
IAA
Sbjct: 429 IAA 431
>AT5G55550.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:22519303-22520884 REVERSE
Length = 448
Score = 332 bits (850), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 233/499 (46%), Positives = 291/499 (58%), Gaps = 76/499 (15%)
Query: 2 DPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERV 61
D GKLFIGGISWDT+EERLR YF N+GDVVEAVIM+DR TGRARGFGF+VFADP V+ERV
Sbjct: 4 DLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERV 63
Query: 62 VMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXX--RTKKIFVGGLPSTITE 119
+M+KH+IDGRTVEAKKAVPRDDQ RTKKIFVGGLPS+ITE
Sbjct: 64 IMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITE 123
Query: 120 SDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVK 179
+FKNYFDQFGTI DVVVMYDHNTQRPRGFGFITFDS++ V++VL+KTFHELNGK+VEVK
Sbjct: 124 EEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVK 183
Query: 180 RAVPKELSP-SPSRGQL------GGYSYAMSRVGSFANGFTQGYNPGMVGGHGLRIDGRL 232
RAVPKE+SP S R L GG S M S+ N F G PG G + R
Sbjct: 184 RAVPKEISPVSNIRSPLASGVNYGGGSNRMP-ANSYFNNFAPG--PGFYNSLGP-VGRRF 239
Query: 233 SPVTVGRSGYPLLSPNYGSELNFELPLSQNESANFTSN-FVIGRALNSSY-NG-SPSRYN 289
SPV +G SG +S +G LN +L L+ N S + TS+ F R ++ Y NG SP+RY
Sbjct: 240 SPV-IG-SGRNAVSA-FGLGLNHDLSLNLNPSCDGTSSTFGYNRIPSNPYFNGASPNRYT 296
Query: 290 NAMGYAGSSIGNNATISS-SSINQNLWGNGNLYGATNPATSNAFVGYGSENXXXXXXXXX 348
S IG+N T S +S N++LWGN T A G+
Sbjct: 297 -------SPIGHNRTESPYNSNNRDLWGN---------RTDTAGPGWNL----------- 329
Query: 349 XXXXXXXXXNNQAGTIGSGYGKGSLSYRSGDVILGSKTVDYGRS--SESTVASAPLYTLS 406
+ +G +G+ S + +GR+ + S ++S+P
Sbjct: 330 --------------NVSNGNNRGNWGLPSSSAVSNDNN-GFGRNYGTSSGLSSSPF---- 370
Query: 407 NGNYDEAFKDTYEAGPFYRDQTWRSSAS------ELDD-SGSLGLGFENAVSDLMSKGSG 459
NG ++ + + Y G Y D TW+ ELD+ S + G +N SD +
Sbjct: 371 NG-FEGSIGELYRGGSVYSDSTWQQQQLPSQSSHELDNLSRAYGYDIDNVGSDPSANDPE 429
Query: 460 GHIGAYAVASRQSNRGIAA 478
+ G+Y V +RQ+NRGIAA
Sbjct: 430 TYNGSYNVGNRQTNRGIAA 448
>AT5G55550.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:22519361-22520884 REVERSE
Length = 460
Score = 327 bits (838), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 230/496 (46%), Positives = 288/496 (58%), Gaps = 76/496 (15%)
Query: 2 DPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERV 61
D GKLFIGGISWDT+EERLR YF N+GDVVEAVIM+DR TGRARGFGF+VFADP V+ERV
Sbjct: 4 DLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERV 63
Query: 62 VMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXX--RTKKIFVGGLPSTITE 119
+M+KH+IDGRTVEAKKAVPRDDQ RTKKIFVGGLPS+ITE
Sbjct: 64 IMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITE 123
Query: 120 SDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVK 179
+FKNYFDQFGTI DVVVMYDHNTQRPRGFGFITFDS++ V++VL+KTFHELNGK+VEVK
Sbjct: 124 EEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVK 183
Query: 180 RAVPKELSP-SPSRGQL------GGYSYAMSRVGSFANGFTQGYNPGMVGGHGLRIDGRL 232
RAVPKE+SP S R L GG S M S+ N F G PG G + R
Sbjct: 184 RAVPKEISPVSNIRSPLASGVNYGGGSNRMP-ANSYFNNFAPG--PGFYNSLG-PVGRRF 239
Query: 233 SPVTVGRSGYPLLSPNYGSELNFELPLSQNESANFTSN-FVIGRALNSSY-NG-SPSRYN 289
SPV +G SG +S +G LN +L L+ N S + TS+ F R ++ Y NG SP+RY
Sbjct: 240 SPV-IG-SGRNAVSA-FGLGLNHDLSLNLNPSCDGTSSTFGYNRIPSNPYFNGASPNRYT 296
Query: 290 NAMGYAGSSIGNNATISS-SSINQNLWGNGNLYGATNPATSNAFVGYGSENXXXXXXXXX 348
S IG+N T S +S N++LWGN T A G+
Sbjct: 297 -------SPIGHNRTESPYNSNNRDLWGN---------RTDTAGPGWNL----------- 329
Query: 349 XXXXXXXXXNNQAGTIGSGYGKGSLSYRSGDVILGSKTVDYGRS--SESTVASAPLYTLS 406
+ +G +G+ S + +GR+ + S ++S+P
Sbjct: 330 --------------NVSNGNNRGNWGLPSSSAVSNDNN-GFGRNYGTSSGLSSSPF---- 370
Query: 407 NGNYDEAFKDTYEAGPFYRDQTWRSSAS------ELDD-SGSLGLGFENAVSDLMSKGSG 459
NG ++ + + Y G Y D TW+ ELD+ S + G +N SD +
Sbjct: 371 NG-FEGSIGELYRGGSVYSDSTWQQQQLPSQSSHELDNLSRAYGYDIDNVGSDPSANDPE 429
Query: 460 GHIGAYAVASRQSNRG 475
+ G+Y V +RQ+NRG
Sbjct: 430 TYNGSYNVGNRQTNRG 445
>AT5G55550.3 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:22519361-22520884 REVERSE
Length = 460
Score = 327 bits (838), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 230/496 (46%), Positives = 288/496 (58%), Gaps = 76/496 (15%)
Query: 2 DPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERV 61
D GKLFIGGISWDT+EERLR YF N+GDVVEAVIM+DR TGRARGFGF+VFADP V+ERV
Sbjct: 4 DLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERV 63
Query: 62 VMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXX--RTKKIFVGGLPSTITE 119
+M+KH+IDGRTVEAKKAVPRDDQ RTKKIFVGGLPS+ITE
Sbjct: 64 IMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITE 123
Query: 120 SDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVK 179
+FKNYFDQFGTI DVVVMYDHNTQRPRGFGFITFDS++ V++VL+KTFHELNGK+VEVK
Sbjct: 124 EEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELNGKLVEVK 183
Query: 180 RAVPKELSP-SPSRGQL------GGYSYAMSRVGSFANGFTQGYNPGMVGGHGLRIDGRL 232
RAVPKE+SP S R L GG S M S+ N F G PG G + R
Sbjct: 184 RAVPKEISPVSNIRSPLASGVNYGGGSNRMP-ANSYFNNFAPG--PGFYNSLG-PVGRRF 239
Query: 233 SPVTVGRSGYPLLSPNYGSELNFELPLSQNESANFTSN-FVIGRALNSSY-NG-SPSRYN 289
SPV +G SG +S +G LN +L L+ N S + TS+ F R ++ Y NG SP+RY
Sbjct: 240 SPV-IG-SGRNAVSA-FGLGLNHDLSLNLNPSCDGTSSTFGYNRIPSNPYFNGASPNRYT 296
Query: 290 NAMGYAGSSIGNNATISS-SSINQNLWGNGNLYGATNPATSNAFVGYGSENXXXXXXXXX 348
S IG+N T S +S N++LWGN T A G+
Sbjct: 297 -------SPIGHNRTESPYNSNNRDLWGN---------RTDTAGPGWNL----------- 329
Query: 349 XXXXXXXXXNNQAGTIGSGYGKGSLSYRSGDVILGSKTVDYGRS--SESTVASAPLYTLS 406
+ +G +G+ S + +GR+ + S ++S+P
Sbjct: 330 --------------NVSNGNNRGNWGLPSSSAVSNDNN-GFGRNYGTSSGLSSSPF---- 370
Query: 407 NGNYDEAFKDTYEAGPFYRDQTWRSSAS------ELDD-SGSLGLGFENAVSDLMSKGSG 459
NG ++ + + Y G Y D TW+ ELD+ S + G +N SD +
Sbjct: 371 NG-FEGSIGELYRGGSVYSDSTWQQQQLPSQSSHELDNLSRAYGYDIDNVGSDPSANDPE 429
Query: 460 GHIGAYAVASRQSNRG 475
+ G+Y V +RQ+NRG
Sbjct: 430 TYNGSYNVGNRQTNRG 445
>AT4G14300.1 | Symbols: | heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative | chr4:8231175-8232781
FORWARD
Length = 411
Score = 231 bits (590), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 101/189 (53%), Positives = 143/189 (75%), Gaps = 2/189 (1%)
Query: 2 DPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERV 61
D GKLF+GGISW+T+E++LR++F N+G+V +A++M+D+ TGR RGFGFV+F+DPSV +RV
Sbjct: 4 DQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRV 63
Query: 62 VMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXX--XXXXRTKKIFVGGLPSTITE 119
+ EKH ID R V+ K+A+ R++Q +TKKIFVGGLP T+T+
Sbjct: 64 LQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTD 123
Query: 120 SDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVK 179
+F+ YF+ +G +TDV +MYD T RPRGFGF++FDSE+ V+ VL+KTFH+L+GK VEVK
Sbjct: 124 EEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVK 183
Query: 180 RAVPKELSP 188
RA+PK+ +P
Sbjct: 184 RALPKDANP 192
>AT5G47620.3 | Symbols: | heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative | chr5:19319774-19321332
REVERSE
Length = 371
Score = 225 bits (573), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 157/411 (38%), Positives = 212/411 (51%), Gaps = 59/411 (14%)
Query: 73 VEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFKNYFDQFGTI 132
VEAKKAVPRDD +KKIFVGGL S++TE++FK YF QFG I
Sbjct: 15 VEAKKAVPRDDH--VVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMI 72
Query: 133 TDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKRAVPKELSPSPSR 192
TDVVVMYDH TQRPRGFGFI++DSEE V+KVL KTFHELNGKMVEVK AVPK+++ + R
Sbjct: 73 TDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAVPKDMALNTMR 132
Query: 193 GQLGGYSYAMSRVGSFANGFTQGYNPGMVGGHGLRIDGRLSPVTVGRSGYPLLSPNYGSE 252
Q+ S+ SR+ S N +TQG++P + G+G++ + R SP R G+ YG E
Sbjct: 133 NQMNVNSFGTSRISSLLNEYTQGFSPSPISGYGVKPEVRYSPAVGNRGGFSPFGHGYGIE 192
Query: 253 LNFELPLSQNESANFTSNFVIGRALNSSYNGSPSRYNNAMGYAGSSIGNNATISSSSINQ 312
LNFE +QN + + F R + Y S R+ + M G+S+GN + ++++ N
Sbjct: 193 LNFEPNQTQNYGSGSSGGFG--RPFSPGYAASLGRFGSQMESGGASVGNGSVLNAAPKNH 250
Query: 313 NLWGNGNL-YGATNPATSNAFVGYGSENXXXXXXXXXXXXXXXXXXNNQAGTIGSGYGKG 371
LWGNG L Y + +P + ++F G + G+IG +G
Sbjct: 251 -LWGNGGLGYMSNSPISRSSFSG--------------------NSGMSSLGSIGDNWG-- 287
Query: 372 SLSYRSGDVILGSKTVDYGRSS----ESTVASAPLYTLSNGNYDEAFKDTYEAGPFYRDQ 427
TV RSS V + + G Y EA Y D
Sbjct: 288 --------------TVARARSSYHGERGGVGLEAMRGVHVGGYSSG-SSILEADSLYSDS 332
Query: 428 TWRSSASELDDSGSLGLGFENAVSDLMSKGSGGHIGAYAVASRQSNRGIAA 478
W S ++ ++ LG+G D MS+G G+I +RQ N GIAA
Sbjct: 333 MWLSLPAKAEE--GLGMG----PLDFMSRGPAGYI------NRQPNGGIAA 371
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
K+F+GG++ E ++YF FG + + V+M D T R RGFGF+ + ++V+ +
Sbjct: 47 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQK 106
Query: 65 K-HVIDGRTVEAKKAVPRD 82
H ++G+ VE K AVP+D
Sbjct: 107 TFHELNGKMVEVKLAVPKD 125
>AT1G17640.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:6067387-6069091 REVERSE
Length = 369
Score = 184 bits (468), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 90/183 (49%), Positives = 119/183 (65%), Gaps = 12/183 (6%)
Query: 3 PGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV 62
PGKLF+GG+SW+T E YF FG+VV++VIM DR TG RGFGFV FAD +VAE+V+
Sbjct: 65 PGKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVL 124
Query: 63 MEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDF 122
E HVID R V+ K+ +PR D++ +T+KIFVGGLP + E +
Sbjct: 125 EEDHVIDDRKVDLKRTLPRGDKD-----------TDIKAVSKTRKIFVGGLPPLLEEDEL 173
Query: 123 KNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK-TFHELNGKMVEVKRA 181
KNYF +G I + +MYDH+T R RGFGF+TF +E+ V+++ HEL K VE+KRA
Sbjct: 174 KNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRA 233
Query: 182 VPK 184
PK
Sbjct: 234 EPK 236
>AT1G58470.1 | Symbols: RBP1, XF41, ATRBP1 | ATRBP1 (ARABIDOPSIS
THALIANA RNA-BINDING PROTEIN 1); RNA binding |
chr1:21731039-21732204 FORWARD
Length = 360
Score = 176 bits (447), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 91/196 (46%), Positives = 124/196 (63%), Gaps = 12/196 (6%)
Query: 2 DPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERV 61
D KLF+GGI+ +T+EE L+QYF +G V+EAV+ K++ TG+ RGFGFV FA+ +
Sbjct: 4 DRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKA 63
Query: 62 VMEKHVIDGRTVEAKKAVPRDD------------QNXXXXXXXXXXXXXXXXXXRTKKIF 109
+ + H I G+ V+ +KA+ + + + RTKKIF
Sbjct: 64 LRDTHFILGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTKKIF 123
Query: 110 VGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFH 169
VGGL S TE +FK+YF++FG TDVVVM+D T RPRGFGF+T+DSE+ VE V+ FH
Sbjct: 124 VGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQSNFH 183
Query: 170 ELNGKMVEVKRAVPKE 185
EL+ K VEVKRA+PKE
Sbjct: 184 ELSDKRVEVKRAIPKE 199
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 107 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 166
K+FVGG+ +E K YF ++G + + VV + T +PRGFGF+ F ++ V K L
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRD 66
Query: 167 TFHELNGKMVEVKRAVPK-ELSPSPSRGQL 195
T H + GK V+V++A+ K EL P Q
Sbjct: 67 T-HFILGKPVDVRKAIRKHELYQQPFSMQF 95
>AT3G13224.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:4254855-4256628 FORWARD
Length = 358
Score = 169 bits (429), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 91/231 (39%), Positives = 136/231 (58%), Gaps = 20/231 (8%)
Query: 3 PGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV 62
PGK+FIGG+ DT ++F +G++ ++VIM+DR TG+ RGFGF+ FADPSV ++V+
Sbjct: 18 PGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVI 77
Query: 63 MEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDF 122
+ HVI+G+ VE K+ +P+ +TKKIFVGG+PST+TE +
Sbjct: 78 EDTHVINGKQVEIKRTIPK------------GAGGNQSKDIKTKKIFVGGIPSTVTEDEL 125
Query: 123 KNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK-TFHELNGKMVEVKRA 181
K++F ++G + + V+ DH T R RGFGF+ FDSEE V+++L K ++ VE+K+A
Sbjct: 126 KDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKKA 185
Query: 182 VPKE-LSPSP------SRGQLGGYSYAMSRVGSFANGFTQGYNPGMVGGHG 225
PK+ L+ SP RG+ SYA G+ PG + HG
Sbjct: 186 EPKKSLNRSPPSYGSHPRGRSSNDSYASYGGPYGGFDGGYGHPPGPIRSHG 236
>AT5G40490.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:16242711-16244651 FORWARD
Length = 423
Score = 156 bits (395), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 76/183 (41%), Positives = 119/183 (65%), Gaps = 15/183 (8%)
Query: 4 GKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVM 63
GK+F+GG++ +T ++F +G++ ++VIMKDR TG+ RGFGFV +AD SV ++V+
Sbjct: 42 GKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQ 101
Query: 64 EKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFK 123
+ H+I G+ VE K+ +PR +TKKIFVGG+PS++ + +FK
Sbjct: 102 DNHIIIGKQVEIKRTIPR--------------GSMSSNDFKTKKIFVGGIPSSVDDDEFK 147
Query: 124 NYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK-TFHELNGKMVEVKRAV 182
+F QFG + + +M DH+T R RGFGF+T++SE+ V+ +L K EL+G VE+K+A
Sbjct: 148 EFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAE 207
Query: 183 PKE 185
PK+
Sbjct: 208 PKK 210
>AT3G13224.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:4254855-4256021 FORWARD
Length = 231
Score = 154 bits (389), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 108/164 (65%), Gaps = 12/164 (7%)
Query: 3 PGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV 62
PGK+FIGG+ DT ++F +G++ ++VIM+DR TG+ RGFGF+ FADPSV ++V+
Sbjct: 18 PGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVI 77
Query: 63 MEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDF 122
+ HVI+G+ VE K+ +P+ +TKKIFVGG+PST+TE +
Sbjct: 78 EDTHVINGKQVEIKRTIPK------------GAGGNQSKDIKTKKIFVGGIPSTVTEDEL 125
Query: 123 KNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 166
K++F ++G + + V+ DH T R RGFGF+ FDSEE V+++L K
Sbjct: 126 KDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK 169
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
Query: 107 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 166
KIF+GGL T + F +F ++G ITD V+M D +T +PRGFGFITF V+KV+
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 167 TFHELNGKMVEVKRAVPK 184
T H +NGK VE+KR +PK
Sbjct: 80 T-HVINGKQVEIKRTIPK 96
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 43/65 (66%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
K+F+GGI E+ L+ +F +G+VVE +++D T R+RGFGFV+F V + ++ +
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK 169
Query: 65 KHVID 69
++ID
Sbjct: 170 GNMID 174
>AT4G36960.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:17427345-17429584 FORWARD
Length = 379
Score = 143 bits (360), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 110/181 (60%), Gaps = 15/181 (8%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
KL + GI WD + + L+ Y FGD+ + ++MKDR+TGR+RGFG+V FA A+ +
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKG 63
Query: 65 KHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFKN 124
+H + R +E K A P+++ + +IFV +PS+++ESDF++
Sbjct: 64 EHFLGNRILEVKVATPKEEMR--------------QPAKKVTRIFVARIPSSVSESDFRS 109
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKRAVPK 184
+F+++G ITD+ + D+N+++ RG GFITF S + VE ++ T H+L G V V RA PK
Sbjct: 110 HFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMEDT-HDLGGTTVAVDRATPK 168
Query: 185 E 185
E
Sbjct: 169 E 169
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 106 KKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLY 165
+K+ V G+P I K+Y +FG + D +VM D +T R RGFG++TF S E + L
Sbjct: 3 RKLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL- 61
Query: 166 KTFHELNGKMVEVKRAVPKELSPSPSR 192
K H L +++EVK A PKE P++
Sbjct: 62 KGEHFLGNRILEVKVATPKEEMRQPAK 88
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 63/139 (45%), Gaps = 12/139 (8%)
Query: 107 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 166
KIFVG LP + D ++YF +FG I D + D RGFGF+TF +E GV + +
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTF-AENGVADRVAR 299
Query: 167 TFHELNGKMVEVKRAVP-KELSPSP--------SRGQ-LGGYSYAMSRVGSFANGFT-QG 215
HE+ G+ V + A P E PS SR + GGY M G G +
Sbjct: 300 RSHEICGQEVAIDSATPLDEAGPSAGASSMLSSSRPEYFGGYGGPMRAFGRMYGGMSLDD 359
Query: 216 YNPGMVGGHGLRIDGRLSP 234
+ GM R D R P
Sbjct: 360 WGYGMPNARPSRPDRRYRP 378
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 44/79 (55%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
K+F+G + + + + LR YF FG + +A I KD RGFGFV FA+ VA+RV
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVARR 300
Query: 65 KHVIDGRTVEAKKAVPRDD 83
H I G+ V A P D+
Sbjct: 301 SHEICGQEVAIDSATPLDE 319
>AT1G33470.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:12144612-12146020 FORWARD
Length = 244
Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 55/75 (73%), Gaps = 1/75 (1%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
K+F+GG++W+T++ LR YF+ FGD+VEAV++ D+++GR++G+GFV F DP A++ ++
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 65 K-HVIDGRTVEAKKA 78
VIDGR A
Sbjct: 68 PAPVIDGRRANCNLA 82
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 107 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 166
K+FVGGL + +NYF+QFG I + VV+ D ++ R +G+GF+TF E +K
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 167 TFHELNGKMVEVKRA---VPKELSPSPSRGQLGG 197
++G+ A V + SP G +GG
Sbjct: 68 PAPVIDGRRANCNLAAFGVQRSKPSSPIHGHVGG 101
>AT1G33470.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:12144612-12146020 FORWARD
Length = 245
Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 55/75 (73%), Gaps = 1/75 (1%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
K+F+GG++W+T++ LR YF+ FGD+VEAV++ D+++GR++G+GFV F DP A++ ++
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 65 K-HVIDGRTVEAKKA 78
VIDGR A
Sbjct: 68 PAPVIDGRRANCNLA 82
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 107 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 166
K+FVGGL + +NYF+QFG I + VV+ D ++ R +G+GF+TF E +K
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 167 TFHELNGKMVEVKRA---VPKELSPSPSRGQLGG 197
++G+ A V + SP G +GG
Sbjct: 68 PAPVIDGRRANCNLAAFGVQRSKPSSPIHGHVGG 101
>AT1G76460.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:28691826-28693400 REVERSE
Length = 285
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
K+F+GG++W+T E LRQ+F+ +G+++EAV++ D+ TGR++G+GFV F DP A R +
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACAD 84
Query: 65 K-HVIDGRTVEAKKA 78
+IDGR A
Sbjct: 85 PTPIIDGRRANCNLA 99
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%)
Query: 107 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 166
K+FVGGL + +F+Q+G I + VV+ D NT R +G+GF+TF E +
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACAD 84
Query: 167 TFHELNGKMVEVKRA 181
++G+ A
Sbjct: 85 PTPIIDGRRANCNLA 99
>AT1G20880.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:7262868-7264823 REVERSE
Length = 274
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
K+F+GG++W+T E LR++F +GD++EAV++ D+ TGR++G+GFV F DP A R ++
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVD 84
Query: 65 K-HVIDGRTVEAKKA 78
+IDGR A
Sbjct: 85 PTPIIDGRRANCNLA 99
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%)
Query: 107 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 166
K+FVGGL + +FDQ+G I + VV+ D NT R +G+GF+TF E +
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVD 84
Query: 167 TFHELNGKMVEVKRA 181
++G+ A
Sbjct: 85 PTPIIDGRRANCNLA 99
>AT3G15010.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:5052851-5054065 FORWARD
Length = 404
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 82/179 (45%), Gaps = 12/179 (6%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
KLFI G++ DT E LR F ++GD+ EA+++ D+ TG+++G+GFV F A + E
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKE 135
Query: 65 K-HVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFK 123
IDGR + A +KI+V +P +
Sbjct: 136 PSKKIDGRVTVTQLAA-----------SGNQGTGSQIADISMRKIYVANVPFDMPADRLL 184
Query: 124 NYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKRAV 182
N+F +G + + + +D T + RGF + + EG + L ++GK + K AV
Sbjct: 185 NHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCKLAV 243
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 42/76 (55%)
Query: 106 KKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLY 165
+K+F+ GL + T ++ F +G + + +V+ D T + +G+GF+TF +G L
Sbjct: 75 RKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALK 134
Query: 166 KTFHELNGKMVEVKRA 181
+ +++G++ + A
Sbjct: 135 EPSKKIDGRVTVTQLA 150
>AT3G15010.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:5052851-5054065 FORWARD
Length = 404
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 82/179 (45%), Gaps = 12/179 (6%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
KLFI G++ DT E LR F ++GD+ EA+++ D+ TG+++G+GFV F A + E
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKE 135
Query: 65 K-HVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFK 123
IDGR + A +KI+V +P +
Sbjct: 136 PSKKIDGRVTVTQLAA-----------SGNQGTGSQIADISMRKIYVANVPFDMPADRLL 184
Query: 124 NYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKRAV 182
N+F +G + + + +D T + RGF + + EG + L ++GK + K AV
Sbjct: 185 NHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHLNCKLAV 243
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 42/76 (55%)
Query: 106 KKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLY 165
+K+F+ GL + T ++ F +G + + +V+ D T + +G+GF+TF +G L
Sbjct: 75 RKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALK 134
Query: 166 KTFHELNGKMVEVKRA 181
+ +++G++ + A
Sbjct: 135 EPSKKIDGRVTVTQLA 150
>AT1G22330.1 | Symbols: | RNA binding | chr1:7886682-7889230
FORWARD
Length = 291
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
K+F+GG++W+T + +R+YF FG+++EAVI+ D+ TG+++G+GFV F D A R V +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVAD 77
Query: 65 KH-VIDGRTVEAKKA 78
+ VIDGR A
Sbjct: 78 PNPVIDGRKANCNIA 92
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 107 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 166
K+FVGGL + + YFDQFG I + V++ D T + +G+GF+TF + + +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVAD 77
Query: 167 TFHELNGKMVEVKRAV---PKELSP-------SPSRGQLGGYS 199
++G+ A P+ +P SPS+ Q GG S
Sbjct: 78 PNPVIDGRKANCNIASFGRPRPSTPRGRGQGGSPSQYQGGGQS 120
>AT4G24770.1 | Symbols: ATRBP31, CP31, ATRBP33, RBP31 | RBP31
(31-KDA RNA BINDING PROTEIN); RNA binding / poly(U)
binding | chr4:12766233-12767962 REVERSE
Length = 329
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 91/195 (46%), Gaps = 17/195 (8%)
Query: 2 DPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERV 61
+ KLF+G +++D N + L F+ G V A ++ +R T ++RGFGFV + AE
Sbjct: 148 EEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETA 207
Query: 62 VME--KHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITE 119
V + ++ ++GR + KA PR + +++VG LP +
Sbjct: 208 VEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAF----------RVYVGNLPWDVDN 257
Query: 120 SDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITF-DSEEGVEKVLYKTFHELNGKMVEV 178
+ F + G + + V+YD T R RGFGF+T D +E E + L G+ + V
Sbjct: 258 GRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRV 317
Query: 179 KRAVPKELSPSPSRG 193
A E P P RG
Sbjct: 318 NVA---EERP-PRRG 328
>AT1G78260.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:29452210-29455074 FORWARD
Length = 287
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 53/75 (70%), Gaps = 1/75 (1%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
K+F+GG++W+T + +R+YF+ FG+++EAVI+ D+ TG+++G+GFV F + A R V +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 65 KH-VIDGRTVEAKKA 78
+ VIDGR A
Sbjct: 78 PNPVIDGRKANCNIA 92
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%)
Query: 107 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL 164
K+FVGGL + + YF+QFG I + V++ D NT + +G+GF+TF + + +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAV 75
>AT2G46780.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:19236586-19238017 FORWARD
Length = 304
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
K+F+GG++W+T + +R+YF+ FG++VEAV++ D+ TGR++G+GFV F + A R
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQN 82
Query: 65 KH-VIDGRTVEAKKAV 79
+ VIDGR A
Sbjct: 83 MNPVIDGRRANCNLAC 98
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 41/87 (47%)
Query: 104 RTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKV 163
+ KIFVGGL + YF+QFG I + VV+ D NT R +G+GF+TF E +
Sbjct: 20 KLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRA 79
Query: 164 LYKTFHELNGKMVEVKRAVPKELSPSP 190
++G+ A P P
Sbjct: 80 CQNMNPVIDGRRANCNLACLGAQKPRP 106
>AT1G78260.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:29452210-29454139 FORWARD
Length = 271
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 53/75 (70%), Gaps = 1/75 (1%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
K+F+GG++W+T + +R+YF+ FG+++EAVI+ D+ TG+++G+GFV F + A R V +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 65 KH-VIDGRTVEAKKA 78
+ VIDGR A
Sbjct: 78 PNPVIDGRKANCNIA 92
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%)
Query: 107 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL 164
K+FVGGL + + YF+QFG I + V++ D NT + +G+GF+TF + + +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAV 75
>AT4G16280.2 | Symbols: FCA | FCA; RNA binding |
chr4:9207180-9214428 REVERSE
Length = 747
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 89/198 (44%), Gaps = 28/198 (14%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
KLF+G + EE +R YF+ G+V+E ++KD+ TG+ +G FV +A A+R +
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 65 KH---VIDGRT--VEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITE 119
H + G T V+ + A D + K+FVG L TE
Sbjct: 181 LHNQITLPGGTGPVQVRYA---DGERERIGTLEF-------------KLFVGSLNKQATE 224
Query: 120 SDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL-----YKTFHELNGK 174
+ + F QFG + DV +M D Q RG GF+ + S+E + T N
Sbjct: 225 KEVEEIFLQFGHVEDVYLMRDEYRQS-RGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQP 283
Query: 175 MVEVKRAVPKELSPSPSR 192
++ V+ A PK P SR
Sbjct: 284 LI-VRFAEPKRPKPGESR 300
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 39/67 (58%)
Query: 105 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL 164
T K+FVG +P T TE + + YF+Q G + +V ++ D T + +G F+ + + + ++ +
Sbjct: 119 TVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAI 178
Query: 165 YKTFHEL 171
+++
Sbjct: 179 RALHNQI 185
>AT4G16280.3 | Symbols: FCA | FCA; RNA binding |
chr4:9208580-9214428 REVERSE
Length = 533
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 89/198 (44%), Gaps = 28/198 (14%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
KLF+G + EE +R YF+ G+V+E ++KD+ TG+ +G FV +A A+R +
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 65 KH---VIDGRT--VEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITE 119
H + G T V+ + A D + K+FVG L TE
Sbjct: 181 LHNQITLPGGTGPVQVRYA---DGERERIGTLEF-------------KLFVGSLNKQATE 224
Query: 120 SDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL-----YKTFHELNGK 174
+ + F QFG + DV +M D Q RG GF+ + S+E + T N
Sbjct: 225 KEVEEIFLQFGHVEDVYLMRDEYRQS-RGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQP 283
Query: 175 MVEVKRAVPKELSPSPSR 192
++ V+ A PK P SR
Sbjct: 284 LI-VRFAEPKRPKPGESR 300
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 39/67 (58%)
Query: 105 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL 164
T K+FVG +P T TE + + YF+Q G + +V ++ D T + +G F+ + + + ++ +
Sbjct: 119 TVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAI 178
Query: 165 YKTFHEL 171
+++
Sbjct: 179 RALHNQI 185
>AT3G52380.1 | Symbols: PDE322, CP33 | CP33 (PIGMENT DEFECTIVE 322);
RNA binding | chr3:19432597-19433833 FORWARD
Length = 329
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 83/180 (46%), Gaps = 11/180 (6%)
Query: 2 DPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERV 61
+ G+L++G + + L Q F G VV+ I+ D+ T R+RGFGFV A+
Sbjct: 114 EEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEA 173
Query: 62 V--MEKHVIDGRTVEAK-KAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTIT 118
+ I GRTV+ VPR +N K++ G L +T
Sbjct: 174 MQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDS--PHKVYAGNLGWNLT 231
Query: 119 ESDFKNYF-DQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVE 177
K+ F DQ G + V+Y+ NT R RGFGFI+F+S E V+ L +NG VE
Sbjct: 232 SQGLKDAFGDQPGVL-GAKVIYERNTGRSRGFGFISFESAENVQSALAT----MNGVEVE 286
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 107 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDS-EEGVEKVLY 165
+++VG LP TIT S+ F + GT+ DV ++YD T R RGFGF+T S EE E +
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176
Query: 166 KTFHELNGKMVEV 178
++ G+ V+V
Sbjct: 177 FNSSQIGGRTVKV 189
>AT1G22910.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:8105797-8107648 FORWARD
Length = 249
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 53/75 (70%), Gaps = 1/75 (1%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
K+F+GG++W+T++E ++++F+ FG+++EAV++ D+ +GR++G+GFV F + A ++
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 65 -KHVIDGRTVEAKKA 78
VIDGR A
Sbjct: 74 ATPVIDGRRANCNLA 88
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%)
Query: 107 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 166
K+FVGGL + K +F+QFG I + VV+ D + R +G+GF+TF E
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 167 TFHELNGKMVEVKRA 181
++G+ A
Sbjct: 74 ATPVIDGRRANCNLA 88
>AT2G37220.1 | Symbols: | 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative |
chr2:15642059-15643410 REVERSE
Length = 289
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 94/190 (49%), Gaps = 14/190 (7%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
KLF+G + ++ + +L Q F++ G+V ++ D+ TGR+RGFGFV + S E +
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 65 --KHVIDGRTVEAKKAVP---RDD------QNXXXXXXXXXXXXXXXXXXRTKKIFVGGL 113
+ +DGR + P R+D ++ +++VG L
Sbjct: 152 FNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNL 211
Query: 114 PSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFH--EL 171
+ + ++ F + G + + V+YD ++ R +GFGF+T+DS + V+ + K+ +L
Sbjct: 212 SWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAI-KSLDGADL 270
Query: 172 NGKMVEVKRA 181
+G+ + V A
Sbjct: 271 DGRQIRVSEA 280
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 62
++++G +SW ++ L F G VVEA ++ DR +GR++GFGFV + + +
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 63 MEKHVIDGRTVEAKKAVPR 81
++ +DGR + +A R
Sbjct: 265 LDGADLDGRQIRVSEAEAR 283
>AT1G22910.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:8105797-8107607 FORWARD
Length = 242
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 53/75 (70%), Gaps = 1/75 (1%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
K+F+GG++W+T++E ++++F+ FG+++EAV++ D+ +GR++G+GFV F + A ++
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 65 -KHVIDGRTVEAKKA 78
VIDGR A
Sbjct: 74 ATPVIDGRRANCNLA 88
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%)
Query: 107 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 166
K+FVGGL + K +F+QFG I + VV+ D + R +G+GF+TF E
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 167 TFHELNGKMVEVKRA 181
++G+ A
Sbjct: 74 ATPVIDGRRANCNLA 88
>AT2G36660.1 | Symbols: PAB7 | PAB7 (POLY(A) BINDING PROTEIN 7); RNA
binding / translation initiation factor |
chr2:15368555-15371477 REVERSE
Length = 609
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 100/231 (43%), Gaps = 22/231 (9%)
Query: 6 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 65
L++ + D +E+ LR+ F FG +V I KD RG+ FV F +P A R
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENR-LCRGYAFVNFDNPEDARRAA--- 258
Query: 66 HVIDG-----RTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITES 120
++G + + +A + ++ + I+V + +TE
Sbjct: 259 ETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEE 318
Query: 121 DFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDS-EEGVEKVLYKTFH--ELNGKMVE 177
+ + +F Q GTIT +M D + +GFGF+ F + EE ++ V KTFH +GK +
Sbjct: 319 ELRKHFSQCGTITSTKLMCDEKG-KSKGFGFVCFSTPEEAIDAV--KTFHGQMFHGKPLY 375
Query: 178 VKRAVPKELSPSPSRGQLGGY-------SYAMSRVGSFANGFTQGYNPGMV 221
V A KE + Q G S A G++A + +PGMV
Sbjct: 376 VAIAQKKEDRKMQLQVQFGNRVEARKSSSSASVNPGTYAPLYYTNTHPGMV 426
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 65/156 (41%), Gaps = 19/156 (12%)
Query: 6 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 65
L++G + E L F F + + KD ++GR+ +G+ F A + +K
Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKK 85
Query: 66 H--VIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFK 123
+ +++G+ + +V D +FV LP ++T + +
Sbjct: 86 NNSLLNGKMIRVMWSVRAPDARRNGVGN----------------VFVKNLPESVTNAVLQ 129
Query: 124 NYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEG 159
+ F +FG I V + + RG+GF+ F+ E+
Sbjct: 130 DMFKKFGNIVSCKVATLEDG-KSRGYGFVQFEQEDA 164
>AT1G22910.3 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:8105797-8107938 FORWARD
Length = 347
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 53/75 (70%), Gaps = 1/75 (1%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
K+F+GG++W+T++E ++++F+ FG+++EAV++ D+ +GR++G+GFV F + A ++
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 65 -KHVIDGRTVEAKKA 78
VIDGR A
Sbjct: 74 ATPVIDGRRANCNLA 88
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%)
Query: 107 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 166
K+FVGGL + K +F+QFG I + VV+ D + R +G+GF+TF E
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 167 TFHELNGKMVEVKRA 181
++G+ A
Sbjct: 74 ATPVIDGRRANCNLA 88
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | GR-RBP4/GRP4 (GLYCINE-RICH
RNA-BINDING PROTEIN 4); RNA binding |
chr3:8606769-8607684 REVERSE
Length = 136
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 62
KLF+GG+SW T++ L+Q F +FG+V EA ++ DR TGR+RGFGFV F+ A +
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 63 MEKHVIDGRTVEAKKAVPR 81
M+ ++GR + A R
Sbjct: 96 MDGKELNGRQIRVNLATER 114
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 105 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL 164
+ K+FVGGL +S K F FG +T+ V+ D T R RGFGF++F E+ +
Sbjct: 34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Query: 165 YKTF-HELNGKMVEVKRAVPKELSPSPS 191
+ ELNG+ + V A + +P S
Sbjct: 94 KEMDGKELNGRQIRVNLATERSSAPRSS 121
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | GR-RBP4/GRP4 (GLYCINE-RICH
RNA-BINDING PROTEIN 4); RNA binding / double-stranded
DNA binding / single-stranded DNA binding |
chr3:8606769-8607684 REVERSE
Length = 136
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 62
KLF+GG+SW T++ L+Q F +FG+V EA ++ DR TGR+RGFGFV F+ A +
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 63 MEKHVIDGRTVEAKKAVPR 81
M+ ++GR + A R
Sbjct: 96 MDGKELNGRQIRVNLATER 114
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 105 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL 164
+ K+FVGGL +S K F FG +T+ V+ D T R RGFGF++F E+ +
Sbjct: 34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Query: 165 YKTF-HELNGKMVEVKRAVPKELSPSPS 191
+ ELNG+ + V A + +P S
Sbjct: 94 KEMDGKELNGRQIRVNLATERSSAPRSS 121
>AT4G00830.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:352782-354965 FORWARD
Length = 495
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 75/154 (48%), Gaps = 28/154 (18%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
++FIGG+ D EE LR + G++ E +MKDR +G ++G+ FV F VA++ + E
Sbjct: 117 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE 176
Query: 65 KHVID--GRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDF 122
H + G+T+ + ++ ++F+G +P TE +F
Sbjct: 177 LHSKEFKGKTIRCSLSETKN------------------------RLFIGNIPKNWTEDEF 212
Query: 123 KNYFDQFGT-ITDVVVMYDH-NTQRPRGFGFITF 154
+ + G + ++ ++ D NT R RGF F+ +
Sbjct: 213 RKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLY 246
>AT4G00830.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:352782-354965 FORWARD
Length = 495
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 75/154 (48%), Gaps = 28/154 (18%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
++FIGG+ D EE LR + G++ E +MKDR +G ++G+ FV F VA++ + E
Sbjct: 117 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE 176
Query: 65 KHVID--GRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDF 122
H + G+T+ + ++ ++F+G +P TE +F
Sbjct: 177 LHSKEFKGKTIRCSLSETKN------------------------RLFIGNIPKNWTEDEF 212
Query: 123 KNYFDQFGT-ITDVVVMYDH-NTQRPRGFGFITF 154
+ + G + ++ ++ D NT R RGF F+ +
Sbjct: 213 RKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLY 246
>AT4G13850.4 | Symbols: GR-RBP2, GRP2, ATGRP2 | ATGRP2 (GLYCINE-RICH
RNA-BINDING PROTEIN 2) | chr4:8021310-8022061 FORWARD
Length = 129
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 62
KLFIGG+SW T++ LR F +FGDVV+A ++ DR TGR+RGFGFV F D A +
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 63 MEKHVIDGRTVEAKKAVPR 81
M+ ++GR + A R
Sbjct: 96 MDGKELNGRHIRVNPANDR 114
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 105 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL 164
+ K+F+GGL ++ ++ F FG + D V+ D T R RGFGF+ F+ E +
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 165 YKTF-HELNGKMVEVKRA 181
+ ELNG+ + V A
Sbjct: 94 SEMDGKELNGRHIRVNPA 111
>AT4G13850.3 | Symbols: GR-RBP2, GRP2, ATGRP2 | ATGRP2 (GLYCINE-RICH
RNA-BINDING PROTEIN 2) | chr4:8021310-8022061 FORWARD
Length = 144
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 62
KLFIGG+SW T++ LR F +FGDVV+A ++ DR TGR+RGFGFV F D A +
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 63 MEKHVIDGRTVEAKKAVPR 81
M+ ++GR + A R
Sbjct: 96 MDGKELNGRHIRVNPANDR 114
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 105 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL 164
+ K+F+GGL ++ ++ F FG + D V+ D T R RGFGF+ F+ E +
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 165 YKTF-HELNGKMVEVKRAVPKELSP 188
+ ELNG+ + V A + +P
Sbjct: 94 SEMDGKELNGRHIRVNPANDRPSAP 118
>AT4G13850.2 | Symbols: GR-RBP2, GRP2, ATGRP2 | ATGRP2 (GLYCINE-RICH
RNA-BINDING PROTEIN 2); RNA binding |
chr4:8021310-8022061 FORWARD
Length = 153
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 62
KLFIGG+SW T++ LR F +FGDVV+A ++ DR TGR+RGFGFV F D A +
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 63 MEKHVIDGRTVEAKKAVPR 81
M+ ++GR + A R
Sbjct: 96 MDGKELNGRHIRVNPANDR 114
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 105 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL 164
+ K+F+GGL ++ ++ F FG + D V+ D T R RGFGF+ F+ E +
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 165 YKTF-HELNGKMVEVKRAVPKELSP 188
+ ELNG+ + V A + +P
Sbjct: 94 SEMDGKELNGRHIRVNPANDRPSAP 118
>AT4G13850.1 | Symbols: GR-RBP2, GRP2, ATGRP2 | ATGRP2 (GLYCINE-RICH
RNA-BINDING PROTEIN 2); RNA binding / double-stranded
DNA binding / single-stranded DNA binding |
chr4:8021310-8022061 FORWARD
Length = 158
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 62
KLFIGG+SW T++ LR F +FGDVV+A ++ DR TGR+RGFGFV F D A +
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 63 MEKHVIDGRTVEAKKAVPR 81
M+ ++GR + A R
Sbjct: 96 MDGKELNGRHIRVNPANDR 114
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 105 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL 164
+ K+F+GGL ++ ++ F FG + D V+ D T R RGFGF+ F+ E +
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 165 YKTF-HELNGKMVEVKRAVPKELSP 188
+ ELNG+ + V A + +P
Sbjct: 94 SEMDGKELNGRHIRVNPANDRPSAP 118
>AT3G56860.2 | Symbols: UBA2A | UBA2A; AU-rich element binding / RNA
binding | chr3:21061687-21063123 REVERSE
Length = 478
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 84/193 (43%), Gaps = 6/193 (3%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
K+F+ G+ WDT E L + F+ +G++ + + D+ +G+++G+GF+++ S A + +
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQ 200
Query: 65 KHVIDGRTVEAKKAV---PRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESD 121
G + A + P KKI+V + + +
Sbjct: 201 PQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQK 260
Query: 122 FKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKRA 181
+F +FG I + + D T RP+GF + S E ++ L + G ++ ++A
Sbjct: 261 LLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKA 320
Query: 182 VPKELSPSPSRGQ 194
+ P P + Q
Sbjct: 321 ID---GPKPGKQQ 330
>AT3G56860.1 | Symbols: UBA2A | UBA2A; RNA binding |
chr3:21061687-21063123 REVERSE
Length = 478
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 84/193 (43%), Gaps = 6/193 (3%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
K+F+ G+ WDT E L + F+ +G++ + + D+ +G+++G+GF+++ S A + +
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQ 200
Query: 65 KHVIDGRTVEAKKAV---PRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESD 121
G + A + P KKI+V + + +
Sbjct: 201 PQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQK 260
Query: 122 FKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKRA 181
+F +FG I + + D T RP+GF + S E ++ L + G ++ ++A
Sbjct: 261 LLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKA 320
Query: 182 VPKELSPSPSRGQ 194
+ P P + Q
Sbjct: 321 ID---GPKPGKQQ 330
>AT3G56860.3 | Symbols: UBA2A | UBA2A; RNA binding |
chr3:21061687-21063123 REVERSE
Length = 478
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 84/193 (43%), Gaps = 6/193 (3%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
K+F+ G+ WDT E L + F+ +G++ + + D+ +G+++G+GF+++ S A + +
Sbjct: 141 KIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQ 200
Query: 65 KHVIDGRTVEAKKAV---PRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESD 121
G + A + P KKI+V + + +
Sbjct: 201 PQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQK 260
Query: 122 FKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKRA 181
+F +FG I + + D T RP+GF + S E ++ L + G ++ ++A
Sbjct: 261 LLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKA 320
Query: 182 VPKELSPSPSRGQ 194
+ P P + Q
Sbjct: 321 ID---GPKPGKQQ 330
>AT3G54770.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:20284841-20286805 REVERSE
Length = 261
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
K+F+GG++WDT++E + +F +GD++EAVI+ D+ T R++G+GFV F D A R +
Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACED 77
Query: 65 K-HVIDGRTVEAKKA 78
+I+GR A
Sbjct: 78 STPIINGRRANCNLA 92
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 40/78 (51%)
Query: 104 RTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKV 163
+ K+FVGGL + ++F ++G I + V++ D T+R +G+GF+TF + +
Sbjct: 15 KLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRA 74
Query: 164 LYKTFHELNGKMVEVKRA 181
+ +NG+ A
Sbjct: 75 CEDSTPIINGRRANCNLA 92
>AT4G39260.3 | Symbols: GR-RBP8, ATGRP8, CCR1 | ATGRP8/GR-RBP8
(COLD, CIRCADIAN RHYTHM, AND RNA BINDING 1,
GLYCINE-RICH PROTEIN 8); RNA binding |
chr4:18274160-18274952 REVERSE
Length = 92
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
+ F+GG++W TN+E L++ F FGDV+++ I+ DR +GR+RGFGFV F D + E
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 65 KH--VIDGRTVEAKKAVPR 81
+ +DGR + +A R
Sbjct: 67 MNGKELDGRVITVNEAQSR 85
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Query: 107 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 166
+ FVGGL + D + F QFG + D ++ D + R RGFGF+TF EK +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD----EKAMRD 62
Query: 167 TFHELNGKMVEVKRAVPKELSPSPSRGQLGG 197
E+NGK ++ R + ++ + SRG GG
Sbjct: 63 AIEEMNGKELD-GRVIT--VNEAQSRGSGGG 90
>AT5G50250.1 | Symbols: | 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative | chr5:20469903-20471191 REVERSE
Length = 289
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 74/161 (45%), Gaps = 12/161 (7%)
Query: 2 DPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERV 61
+ KLF+G + +D + + L F+ G V + ++ +R T ++RGFGFV + AE+
Sbjct: 111 EEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKA 170
Query: 62 VME--KHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITE 119
V + ++GR + +A PR + +I+VG LP +
Sbjct: 171 VEKFNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAF----------RIYVGNLPWDVDS 220
Query: 120 SDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGV 160
+ F + G + D V+ D T R RGFGF+ +E V
Sbjct: 221 GRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEV 261
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
Query: 107 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 166
K+FVG LP + F+Q GT+ V+Y+ +T + RGFGF+T + E EK + K
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173
Query: 167 -TFHELNGKMVEVKRAVPKELSPSPSRGQLGGYSYAMS-RVGSFANGFTQGYNPGMVGGH 224
E+NG+ + V RA P+ P R Q Y A VG+ G + H
Sbjct: 174 FNSFEVNGRRLTVNRAAPR--GSRPER-QPRVYDAAFRIYVGNLPWDVDSGRLERLFSEH 230
Query: 225 GLRIDGRL 232
G +D R+
Sbjct: 231 GKVVDARV 238
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
++++G + WD + RL + F G VV+A ++ DR TGR+RGFGFV ++ + V +
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNEN---EVNVA 264
Query: 65 KHVIDGRTVEAK 76
+DG+ +E +
Sbjct: 265 IAALDGQNLEGR 276
>AT5G11412.1 | Symbols: | nucleic acid binding / nucleotide binding
| chr5:3640350-3640877 REVERSE
Length = 175
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
K+++GG+ W+T E LR YF+ FGD++ ++ DR TGR+ G+GFV F D A R
Sbjct: 53 KIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFRDAESATRACQN 112
Query: 65 -KHVIDGRTVEAKKA 78
K VIDGR + A
Sbjct: 113 PKPVIDGREAKCNLA 127
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%)
Query: 104 RTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEK 162
R KI+VGGLP ++YF+QFG I V ++ D T R G+GF+TF E +
Sbjct: 50 RYTKIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFRDAESATR 108
>AT1G60650.2 | Symbols: | glycine-rich RNA-binding protein,
putative | chr1:22343754-22345813 FORWARD
Length = 292
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 107 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 166
+IFVGGL +TE ++ FD++G IT+ +M +T RPRGFGFITF G + + K
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI-K 71
Query: 167 TFH--ELNGKMVEVKRAVPK 184
H EL K++ V +A PK
Sbjct: 72 HMHGRELGNKVISVNKAEPK 91
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
++F+GG+SWD E +L F +G + E IM R TGR RGFGF+ F D A+ +
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 65 KH--VIDGRTVEAKKAVPR 81
H + + + KA P+
Sbjct: 73 MHGRELGNKVISVNKAEPK 91
>AT1G60650.1 | Symbols: | glycine-rich RNA-binding protein,
putative | chr1:22343754-22345813 FORWARD
Length = 292
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 107 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 166
+IFVGGL +TE ++ FD++G IT+ +M +T RPRGFGFITF G + + K
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI-K 71
Query: 167 TFH--ELNGKMVEVKRAVPK 184
H EL K++ V +A PK
Sbjct: 72 HMHGRELGNKVISVNKAEPK 91
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
++F+GG+SWD E +L F +G + E IM R TGR RGFGF+ F D A+ +
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 65 KH--VIDGRTVEAKKAVPR 81
H + + + KA P+
Sbjct: 73 MHGRELGNKVISVNKAEPK 91
>AT2G23350.1 | Symbols: PAB4 | PAB4 (POLY(A) BINDING PROTEIN 4); RNA
binding / translation initiation factor |
chr2:9950289-9953121 FORWARD
Length = 662
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 83/176 (47%), Gaps = 14/176 (7%)
Query: 6 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 65
+++ +S T ++ L+ F +G + AV+M+D G++R FGFV F +P A R V
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRD-GDGKSRCFGFVNFENPEDAARAV--- 282
Query: 66 HVIDGRTVEAK-----KAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITES 120
++G+ + K KA + ++ ++V L T+T+
Sbjct: 283 EALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDE 342
Query: 121 DFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMV 176
+ F +FGTIT VM D + +G GF+ F + +VL +E+NGKMV
Sbjct: 343 KLRELFAEFGTITSCKVMRDPSGTS-KGSGFVAFSAASEASRVL----NEMNGKMV 393
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 77/176 (43%), Gaps = 16/176 (9%)
Query: 4 GKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVM 63
G LF+ + + + L + F G +V + D G++RG+GFV F D + + +
Sbjct: 134 GNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHM-GQSRGYGFVQF-DTEDSAKNAI 191
Query: 64 EKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFK 123
EK ++G+ + D Q + ++V L T+ + K
Sbjct: 192 EK--LNGKVLN-------DKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELK 242
Query: 124 NYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVK 179
F Q+G+I+ VVM D + + R FGF+ F++ E + + LNGK + K
Sbjct: 243 TTFGQYGSISSAVVMRDGDG-KSRCFGFVNFENPEDAARAV----EALNGKKFDDK 293
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 108 IFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK- 166
++VG L +T+S +YF + + V V D T G+G++ + + + EK + K
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 167 TFHELNGKMVEV 178
+ LNGKM+ +
Sbjct: 108 NYSYLNGKMIRI 119
>AT4G39260.2 | Symbols: GR-RBP8, ATGRP8, CCR1 | ATGRP8/GR-RBP8
(COLD, CIRCADIAN RHYTHM, AND RNA BINDING 1,
GLYCINE-RICH PROTEIN 8); RNA binding |
chr4:18274160-18274952 REVERSE
Length = 126
Score = 69.3 bits (168), Expect = 5e-12, Method: Composition-based stats.
Identities = 31/76 (40%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 62
+ F+GG++W TN+E L++ F FGDV+++ I+ DR +GR+RGFGFV F D +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 63 MEKHVIDGRTVEAKKA 78
M +DGR + +A
Sbjct: 67 MNGKELDGRVITVNEA 82
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 107 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 166
+ FVGGL + D + F QFG + D ++ D + R RGFGF+TF E+ + + +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 167 -TFHELNGKMVEVKRA 181
EL+G+++ V A
Sbjct: 67 MNGKELDGRVITVNEA 82
>AT4G39260.1 | Symbols: GR-RBP8, ATGRP8, CCR1 | ATGRP8/GR-RBP8
(COLD, CIRCADIAN RHYTHM, AND RNA BINDING 1,
GLYCINE-RICH PROTEIN 8); RNA binding |
chr4:18274160-18274952 REVERSE
Length = 169
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
+ F+GG++W TN+E L++ F FGDV+++ I+ DR +GR+RGFGFV F D + E
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 65 KH--VIDGRTVEAKKA 78
+ +DGR + +A
Sbjct: 67 MNGKELDGRVITVNEA 82
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 107 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 166
+ FVGGL + D + F QFG + D ++ D + R RGFGF+TF EK +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD----EKAMRD 62
Query: 167 TFHELNGKMVE 177
E+NGK ++
Sbjct: 63 AIEEMNGKELD 73
>AT3G26420.1 | Symbols: ATRZ-1A | ATRZ-1A; RNA binding /
nucleotide binding | chr3:9673190-9674292 FORWARD
Length = 245
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 62
+ FIGG++W T++ LR F+ +G +VEA ++ D+ +GR+RGFGF+ F + + +
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAA 67
Query: 63 MEKHVIDGRTVEAKKAVP 80
M +DGRT+ KA P
Sbjct: 68 MNGMDLDGRTITVDKAQP 85
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 107 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGV-EKVLY 165
+ F+GGL T ++ ++ F+++G + + V+ D + R RGFGFITFD ++ + E +
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAA 67
Query: 166 KTFHELNGKMVEVKRAVPKE 185
+L+G+ + V +A P +
Sbjct: 68 MNGMDLDGRTITVDKAQPHQ 87
>AT2G41060.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:17134216-17135571 FORWARD
Length = 451
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 78/178 (43%), Gaps = 5/178 (2%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
K+F+ G+ WDT + L F+ +G++ + + D+ +G+++G+GF++F S A + +
Sbjct: 129 KIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQ 188
Query: 65 -KHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFK 123
+ I R + A Q +KI+V + + I
Sbjct: 189 PQKKIGTRMTACQLASIGPVQGNPVVAPAQHFNPENV----QRKIYVSNVSADIDPQKLL 244
Query: 124 NYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKRA 181
+F +FG I + + D T RP+GF + S E +K L + G ++ +A
Sbjct: 245 EFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEPHKTFEGHVLHCHKA 302
>AT2G41060.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:17134216-17135571 FORWARD
Length = 451
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 78/178 (43%), Gaps = 5/178 (2%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
K+F+ G+ WDT + L F+ +G++ + + D+ +G+++G+GF++F S A + +
Sbjct: 129 KIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQ 188
Query: 65 -KHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFK 123
+ I R + A Q +KI+V + + I
Sbjct: 189 PQKKIGTRMTACQLASIGPVQGNPVVAPAQHFNPENV----QRKIYVSNVSADIDPQKLL 244
Query: 124 NYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKRA 181
+F +FG I + + D T RP+GF + S E +K L + G ++ +A
Sbjct: 245 EFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEPHKTFEGHVLHCHKA 302
>AT5G61030.1 | Symbols: GR-RBP3 | GR-RBP3 (glycine-rich RNA-binding
protein 3); RNA binding | chr5:24578096-24579378 FORWARD
Length = 309
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Query: 1 MDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAER 60
M KLFIGG+++ +E+ LR+ F +G+VV+ ++ DR TGR+RGFGFV F A
Sbjct: 37 MSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASS 96
Query: 61 VVMEKHVIDGRTVEAK 76
+ +DGR + +
Sbjct: 97 AI---QALDGRDLHGR 109
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 105 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL 164
+ K+F+GG+ ++ E + F ++G + D V+ D T R RGFGF+TF S E +
Sbjct: 39 SSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAI 98
Query: 165 YKTF-HELNGKMVEVKRA 181
+L+G++V+V A
Sbjct: 99 QALDGRDLHGRVVKVNYA 116
>AT1G49760.1 | Symbols: PAB8 | PAB8 (POLY(A) BINDING PROTEIN 8); RNA
binding / translation initiation factor |
chr1:18420408-18423421 FORWARD
Length = 671
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 83/179 (46%), Gaps = 14/179 (7%)
Query: 6 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 65
+++ +S ++E L + F FG VIM+D G+++GFGFV F + A R V
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRD-GEGKSKGFGFVNFENSDDAARAV--- 281
Query: 66 HVIDGRTVEAK-----KAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITES 120
++G+T + K KA + ++ + ++V L ++T+
Sbjct: 282 DALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDD 341
Query: 121 DFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVK 179
+ +F FGTIT VM D + RG GF+ F + E + + E+NGKM+ K
Sbjct: 342 KLREHFAPFGTITSCKVMRDPSGVS-RGSGFVAFSTPEEATRAIT----EMNGKMIVTK 395
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 77/177 (43%), Gaps = 23/177 (12%)
Query: 6 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 65
L++G + + +L + F G VV + +D TT R+ G+G+V +A P A R + E
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 66 H--VIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFK 123
+ ++GR + +V RD IF+ L +I
Sbjct: 107 NFMALNGRAIRVMYSV-RD---------------PSLRKSGVGNIFIKNLDKSIDHKALH 150
Query: 124 NYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKR 180
F FG I V D + Q +G+GF+ +D++E + + K LNG ++ K+
Sbjct: 151 ETFSAFGPILSCKVAVDPSGQS-KGYGFVQYDTDEAAQGAIDK----LNGMLLNDKQ 202
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 105 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL 164
T ++VG L +T+T+S F Q G + V V D T+R G+G++ + + + + L
Sbjct: 44 TTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRAL 103
Query: 165 YKT-FHELNGKMVEVKRAV 182
+ F LNG+ + V +V
Sbjct: 104 NELNFMALNGRAIRVMYSV 122
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/184 (20%), Positives = 78/184 (42%), Gaps = 32/184 (17%)
Query: 4 GKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAE---- 59
G +FI + + + L + F FG ++ + D +G+++G+GFV + A+
Sbjct: 133 GNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVD-PSGQSKGYGFVQYDTDEAAQGAID 191
Query: 60 ----RVVMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPS 115
++ +K V G V + P ++ + ++V L
Sbjct: 192 KLNGMLLNDKQVYVGPFVHKLQRDPSGEK------------------VKFTNVYVKNLSE 233
Query: 116 TITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKM 175
++++ + F +FG T V+M D + +GFGF+ F++ + + + LNGK
Sbjct: 234 SLSDEELNKVFGEFGVTTSCVIMRDGEG-KSKGFGFVNFENSDDAARAV----DALNGKT 288
Query: 176 VEVK 179
+ K
Sbjct: 289 FDDK 292
>AT4G34110.1 | Symbols: PABP2, PAB2 | PAB2 (POLY(A) BINDING PROTEIN
2); RNA binding | chr4:16337714-16339896 FORWARD
Length = 443
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 83/176 (47%), Gaps = 8/176 (4%)
Query: 6 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV--M 63
+++ ++ T ++ L+ F +G + AV+MKD G+++GFGFV F + A R V +
Sbjct: 31 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKD-GEGKSKGFGFVNFENADDAARAVESL 89
Query: 64 EKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFK 123
H D + +A + ++ ++ ++V L +I++ K
Sbjct: 90 NGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLK 149
Query: 124 NYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVK 179
F FGT+T VM D N +G GF+ F + E + + +L+GKM+E K
Sbjct: 150 EIFSPFGTVTSSKVMRDPNGTS-KGSGFVAFATPEEATEAM----SQLSGKMIESK 200
>AT5G06210.1 | Symbols: | RNA-binding protein, putative |
chr5:1878498-1879516 FORWARD
Length = 146
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
KLFIGG+S+ T E+ L + F G VVEA I+ DR + R++GFGFV FA A++ +ME
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 65 --KHVIDGRTV 73
++GRT+
Sbjct: 95 FNGQQLNGRTI 105
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 107 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 166
K+F+GGL TE F + G + + ++ D + R +GFGF+TF S + +K L +
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 167 -TFHELNGKMVEVKRAVPKELSPSPSRGQLGGYSYA 201
+LNG+ + V A K+ S G GGY A
Sbjct: 95 FNGQQLNGRTIFVDYAKAKQ-----SLGGGGGYPIA 125
>AT2G21660.1 | Symbols: GR-RBP7, GRP7, CCR2, ATGRP7 | ATGRP7
(COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2); RNA
binding / double-stranded DNA binding / single-stranded
DNA binding | chr2:9272557-9273396 REVERSE
Length = 176
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 62
+ F+GG++W T++ L F +GDV+++ I+ DR TGR+RGFGFV F D + +
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 63 MEKHVIDGRTVEAKKA 78
M +DGR++ +A
Sbjct: 69 MNGQDLDGRSITVNEA 84
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 107 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLY- 165
+ FVGGL + + F Q+G + D ++ D T R RGFGF+TF E+ ++ +
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 166 KTFHELNGKMVEVKRA 181
+L+G+ + V A
Sbjct: 69 MNGQDLDGRSITVNEA 84
>AT4G39260.4 | Symbols: GR-RBP8, ATGRP8, CCR1 | ATGRP8/GR-RBP8
(COLD, CIRCADIAN RHYTHM, AND RNA BINDING 1,
GLYCINE-RICH PROTEIN 8); RNA binding |
chr4:18274160-18274952 REVERSE
Length = 105
Score = 65.9 bits (159), Expect = 5e-11, Method: Composition-based stats.
Identities = 27/60 (45%), Positives = 41/60 (68%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
+ F+GG++W TN+E L++ F FGDV+++ I+ DR +GR+RGFGFV F D + E
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 107 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL 164
+ FVGGL + D + F QFG + D ++ D + R RGFGF+TF E+ + +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAI 64
>AT5G04280.1 | Symbols: | glycine-rich RNA-binding protein |
chr5:1192462-1195414 FORWARD
Length = 310
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 107 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 166
+IFVGGL +T+ D + F +FG I D +M + +T R RGFGFITF +++ + +
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 167 TF-HELNGKMVEVKRAVPK 184
+ +++ V RA PK
Sbjct: 68 MHGRDFGDRVISVNRAEPK 86
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
++F+GG+S + + L + F FGD+++ IM +R TGR+RGFGF+ FAD + + E
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 65 KHVID--GRTVEAKKAVP---RDD 83
H D R + +A P RDD
Sbjct: 68 MHGRDFGDRVISVNRAEPKLGRDD 91
>AT5G53720.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:21823848-21824238 FORWARD
Length = 100
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
K+++ G+ W T E L YF+ FG++V A ++ D T R++GFGFV F + A R
Sbjct: 10 KIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACEN 69
Query: 65 -KHVIDGRTVEAKKA 78
H IDGRTV K A
Sbjct: 70 PNHTIDGRTVNCKLA 84
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 40/78 (51%)
Query: 104 RTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKV 163
R KI+V GLP +YF++FG I V+ D TQR +GFGF+TF E +
Sbjct: 7 RETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRA 66
Query: 164 LYKTFHELNGKMVEVKRA 181
H ++G+ V K A
Sbjct: 67 CENPNHTIDGRTVNCKLA 84
>AT1G74230.1 | Symbols: GR-RBP5 | GR-RBP5 (glycine-rich RNA-binding
protein 5); RNA binding | chr1:27919007-27920518 FORWARD
Length = 289
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 4/77 (5%)
Query: 1 MDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAER 60
M K+F+GGIS+ T+E LR+ F +G+VV+A I+ DR TGR+RGF FV F A
Sbjct: 31 MSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASN 90
Query: 61 VVMEKHVIDGRTVEAKK 77
+ +DG+ + ++
Sbjct: 91 AMQ----LDGQDLHGRR 103
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%)
Query: 105 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL 164
+ KIFVGG+ + E + F ++G + D ++ D T R RGF F+TF S E +
Sbjct: 33 SSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM 92
Query: 165 YKTFHELNGKMVEVKRAV 182
+L+G+ + V A
Sbjct: 93 QLDGQDLHGRRIRVNYAT 110
>AT2G21660.2 | Symbols: GR-RBP7, GRP7, CCR2, ATGRP7 | ATGRP7
(COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2); RNA
binding | chr2:9272557-9273396 REVERSE
Length = 159
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 62
+ F+GG++W T++ L F +GDV+++ I+ DR TGR+RGFGFV F D + +
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 63 MEKHVIDGRTVEAKKA 78
M +DGR++ +A
Sbjct: 69 MNGQDLDGRSITVNEA 84
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 107 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLY- 165
+ FVGGL + + F Q+G + D ++ D T R RGFGF+TF E+ ++ +
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 166 KTFHELNGKMVEVKRA 181
+L+G+ + V A
Sbjct: 69 MNGQDLDGRSITVNEA 84
>AT1G18630.1 | Symbols: GR-RBP6 | GR-RBP6 (glycine-rich RNA-binding
protein 6); RNA binding | chr1:6415218-6416275 FORWARD
Length = 155
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 49/75 (65%), Gaps = 2/75 (2%)
Query: 1 MDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAER 60
+ P K+F+GG+S T+ E L++ F +FG +V+AV++ DR +G +RGFGFV + VA
Sbjct: 33 LTPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANN 92
Query: 61 VV--MEKHVIDGRTV 73
+ M+ +DGR +
Sbjct: 93 AMQAMQNKELDGRII 107
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 107 KIFVGGL-PSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLY 165
KIFVGGL PST E K F FG I D VV+ D + RGFGF+T+DS E +
Sbjct: 37 KIFVGGLSPSTDVEL-LKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQ 95
Query: 166 KTFH-ELNGKMVEVKRA 181
+ EL+G+++ V A
Sbjct: 96 AMQNKELDGRIIGVHPA 112
>AT1G01080.1 | Symbols: | 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative |
chr1:45503-46789 REVERSE
Length = 293
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 80/185 (43%), Gaps = 7/185 (3%)
Query: 3 PGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV 62
P +L++ I + +L FQ FG V+ + ++ TG +RG G+V + A+ +
Sbjct: 107 PCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAI 166
Query: 63 --MEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITES 120
++ + GR + + +V + K++VG LP
Sbjct: 167 ASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPD 226
Query: 121 DFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKR 180
+N+F +FGTI V++D T R R F F++F S E + L NG E +R
Sbjct: 227 GLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAAL-----SFNGTQYEGRR 281
Query: 181 AVPKE 185
+ +E
Sbjct: 282 IIVRE 286
>AT3G52150.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:19353052-19354068 FORWARD
Length = 253
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 83/189 (43%), Gaps = 11/189 (5%)
Query: 1 MDPG-----KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADP 55
+DP +++IG I E+L + + G V + +M D+ +GR+R FGF
Sbjct: 68 LDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSV 127
Query: 56 SVAERVVMEKHVIDGRTVEAK--KAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGL 113
A VV EK ++G TVE + K + K++VG L
Sbjct: 128 EDANAVV-EK--LNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNL 184
Query: 114 PSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHE-LN 172
T+T+ +N F + G + V T + GFGF+TF SEE VE + + L
Sbjct: 185 AKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLE 244
Query: 173 GKMVEVKRA 181
G+ + V +A
Sbjct: 245 GQKIRVNKA 253
>AT3G52150.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:19353052-19354068 FORWARD
Length = 253
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 83/189 (43%), Gaps = 11/189 (5%)
Query: 1 MDPG-----KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADP 55
+DP +++IG I E+L + + G V + +M D+ +GR+R FGF
Sbjct: 68 LDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSV 127
Query: 56 SVAERVVMEKHVIDGRTVEAK--KAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGL 113
A VV EK ++G TVE + K + K++VG L
Sbjct: 128 EDANAVV-EK--LNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNL 184
Query: 114 PSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHE-LN 172
T+T+ +N F + G + V T + GFGF+TF SEE VE + + L
Sbjct: 185 AKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLE 244
Query: 173 GKMVEVKRA 181
G+ + V +A
Sbjct: 245 GQKIRVNKA 253
>AT1G47490.1 | Symbols: ATRBP47C | ATRBP47C; RNA binding |
chr1:17427241-17429622 FORWARD
Length = 432
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 15/176 (8%)
Query: 6 LFIGGISWDTNEERLRQYF-QNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
+F+G +S D ++ L + F + + V A ++ D TGR++G+GFV F D + + + E
Sbjct: 199 IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 258
Query: 65 KHVID--GRTVEAKKAVPRDDQNXXXX--XXXXXXXXXXXXXXRTKKIFVGGLPSTITES 120
+ + R + A PR IFVGGL S++T+
Sbjct: 259 MNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDE 318
Query: 121 DFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMV 176
D K F++FG I V + +G GF+ F + E+ L K LNG ++
Sbjct: 319 DLKQPFNEFGEIVSVKIPVG------KGCGFVQFVNRPNAEEALEK----LNGTVI 364
>AT4G27000.1 | Symbols: ATRBP45C | ATRBP45C; RNA binding |
chr4:13554989-13557769 REVERSE
Length = 415
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 70/164 (42%), Gaps = 13/164 (7%)
Query: 6 LFIGGISWDTNEERLRQYFQN-FGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
+F+G ++ D + L + F+ + V A ++ DRTTGR++G+GFV FAD S R + E
Sbjct: 175 VFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTE 234
Query: 65 K--HVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDF 122
R + A + IFVG + ++TE D
Sbjct: 235 MNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDL 294
Query: 123 KNYFDQFGTITDVVVMYDHNTQRPRG--FGFITFDSEEGVEKVL 164
K+ F QFG + V + P G GF+ + + E+ L
Sbjct: 295 KSVFGQFGELVHVKI--------PAGKRCGFVQYANRACAEQAL 330
>AT3G06970.1 | Symbols: | RNA binding | chr3:2199659-2201156
REVERSE
Length = 317
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
K+F+G ++W T + LR+YF+ FG VV+A ++ + GR++G+GF+ F D R +
Sbjct: 13 KIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRALQN 72
Query: 65 -KHVIDGRTVEAKKA 78
K +IDGRT A
Sbjct: 73 SKPIIDGRTTNCNLA 87
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 30/51 (58%)
Query: 104 RTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITF 154
R KIFVG L T D + YF+QFG + D V+ + R +G+GFITF
Sbjct: 10 RVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITF 60
>AT3G16380.1 | Symbols: PAB6 | PAB6 (POLY(A) BINDING PROTEIN 6); RNA
binding / translation initiation factor |
chr3:5558682-5560999 REVERSE
Length = 537
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 84/188 (44%), Gaps = 8/188 (4%)
Query: 2 DPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERV 61
D +++ + ++ L F +G V V+M+D GR+RGFGFV F +P A++
Sbjct: 200 DSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRD-GMGRSRGFGFVNFCNPENAKKA 258
Query: 62 VMEKHV---IDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTIT 118
ME + + + KA+ +D++ R ++V L ++
Sbjct: 259 -MESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNM-RWSNLYVKNLSESMN 316
Query: 119 ESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITF-DSEEGVEKVLYKTFHELNGKMVE 177
E+ + F +G I VM H R +GFGF+ F + EE + Y ++GK +
Sbjct: 317 ETRLREIFGCYGQIVSAKVMC-HENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIV 375
Query: 178 VKRAVPKE 185
V+ A KE
Sbjct: 376 VRVAERKE 383
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 85/183 (46%), Gaps = 18/183 (9%)
Query: 6 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVF--ADPSVAERVVM 63
L++ + L + F FG ++ ++++ G+++GFGFV F +V+ R +
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKVVEE--NGQSKGFGFVQFDTEQSAVSARSAL 171
Query: 64 EKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFK 123
++ G+ + K + +D++ + ++V L T+T+
Sbjct: 172 HGSMVYGKKLFVAKFINKDER------------AAMAGNQDSTNVYVKNLIETVTDDCLH 219
Query: 124 NYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTF-HELNGKMVEVKRAV 182
F Q+GT++ VVVM D R RGFGF+ F + E +K + +L K + V +A+
Sbjct: 220 TLFSQYGTVSSVVVMRD-GMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKAL 278
Query: 183 PKE 185
K+
Sbjct: 279 KKD 281
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 6 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVF--ADPSVAERVVM 63
L++ +S NE RLR+ F +G +V A +M GR++GFGFV F + S + +
Sbjct: 306 LYVKNLSESMNETRLREIFGCYGQIVSAKVM-CHENGRSKGFGFVCFSNCEESKQAKRYL 364
Query: 64 EKHVIDGRTVEAKKAVPRDDQ 84
++DG+ + + A ++D+
Sbjct: 365 NGFLVDGKPIVVRVAERKEDR 385
>AT1G34140.1 | Symbols: PAB1 | PAB1 (POLY(A) BINDING PROTEIN 1); RNA
binding / translation initiation factor |
chr1:12433334-12434713 REVERSE
Length = 407
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 82/176 (46%), Gaps = 13/176 (7%)
Query: 6 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVF--ADPSVAERVVM 63
+++ + + L++ F FG++ AV+MKD G++R FGFV F A+ +V M
Sbjct: 121 VYVKNLVETATDADLKRLFGEFGEITSAVVMKD-GEGKSRRFGFVNFEKAEAAVTAIEKM 179
Query: 64 EKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKK---IFVGGLPSTITES 120
V+D + + +A + N +T+K ++V L ++ +
Sbjct: 180 NGVVVDEKELHVGRA--QRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNT 237
Query: 121 DFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMV 176
+ F +FGTIT VM H+ +G GF+ F + E K + K +NGKMV
Sbjct: 238 KLEELFSEFGTITSCKVMV-HSNGISKGVGFVEFSTSEEASKAMLK----MNGKMV 288
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 23/178 (12%)
Query: 4 GKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVF-ADPSVAERVV 62
G +F+ + + ++L F FG V+ + +D +G ++G+GFV F +D SV
Sbjct: 31 GNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARD-ASGVSKGYGFVQFYSDLSVYTACN 89
Query: 63 MEK-HVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESD 121
+I + + V R + ++V L T T++D
Sbjct: 90 FHNGTLIRNQHIHVCPFVSRGQWDKSRVFT---------------NVYVKNLVETATDAD 134
Query: 122 FKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVK 179
K F +FG IT VVM D + R FGF+ F+ E + K +NG +V+ K
Sbjct: 135 LKRLFGEFGEITSAVVMKD-GEGKSRRFGFVNFEKAEAAVTAIEK----MNGVVVDEK 187
>AT5G53680.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:21815608-21816335 FORWARD
Length = 169
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
K+++GG+ W T +E L +F+ FG+++ ++ DR T R++G+GFV F D A R +
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKD 73
Query: 65 KH-VIDGRTVEAKKA 78
+ I+GR K A
Sbjct: 74 PNPTIEGRITNCKLA 88
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%)
Query: 107 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 166
KI+VGGLP T + N+F +FG I V V+ D T R +G+GF+TF E +
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKD 73
Query: 167 TFHELNGKMVEVKRA 181
+ G++ K A
Sbjct: 74 PNPTIEGRITNCKLA 88
>AT3G08000.1 | Symbols: | RNA-binding protein, putative |
chr3:2555040-2555835 REVERSE
Length = 143
Score = 62.4 bits (150), Expect = 7e-10, Method: Composition-based stats.
Identities = 31/67 (46%), Positives = 44/67 (65%), Gaps = 3/67 (4%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
KLFIGG+SW +E+ L+ F +FG+V E I D+ +GR+RGFGFV FA+ A +
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDA---LSA 98
Query: 65 KHVIDGR 71
K +DG+
Sbjct: 99 KDAMDGK 105
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 107 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEG 159
K+F+GGL ++ E K+ F FG + +V + YD + R RGFGF+ F +EEG
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDF-AEEG 93
>AT1G47500.1 | Symbols: ATRBP47C' | ATRBP47C' (RNA-BINDING PROTEIN
47C'); RNA binding | chr1:17435122-17437245 FORWARD
Length = 434
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 15/176 (8%)
Query: 6 LFIGGISWDTNEERLRQYF-QNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
+F+G ++ D ++ L + F + + V A ++ D TGR++G+GFV F D + + + E
Sbjct: 201 IFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 260
Query: 65 KHVID--GRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRT--KKIFVGGLPSTITES 120
+ + R + A PR T IFVGGL S++T+
Sbjct: 261 MNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTDE 320
Query: 121 DFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMV 176
D K F +FG I V + +G GF+ F + E+ L K LNG ++
Sbjct: 321 DLKQPFSEFGEIVSVKIPVG------KGCGFVQFVNRPNAEEALEK----LNGTVI 366
>AT4G13860.1 | Symbols: | glycine-rich RNA-binding protein,
putative | chr4:8022597-8023158 FORWARD
Length = 87
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 62
++++G +S T ++ LR+ F +G+VV+A++M+DR T R+RGFGFV ++ S AE V
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 63 MEKHVIDGRTVEAK 76
M+ ++GR V K
Sbjct: 64 MDGKELNGRRVSVK 77
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 107 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLY- 165
+++VG L T T+ + F +G + D +VM D T R RGFGF+T+ S E +
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 166 KTFHELNGKMVEVK 179
ELNG+ V VK
Sbjct: 64 MDGKELNGRRVSVK 77
>AT1G01080.2 | Symbols: | 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative |
chr1:45503-46789 REVERSE
Length = 294
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 81/186 (43%), Gaps = 8/186 (4%)
Query: 3 PGKLFIGGISWDTNEERLRQYFQNFGDVVEA-VIMKDRTTGRARGFGFVVFADPSVAERV 61
P +L++ I + +L FQ FG V+ V+ ++ TG +RG G+V + A+
Sbjct: 107 PCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGSINSAKIA 166
Query: 62 V--MEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITE 119
+ ++ + GR + + +V + K++VG LP
Sbjct: 167 IASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQP 226
Query: 120 SDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVK 179
+N+F +FGTI V++D T R R F F++F S E + L NG E +
Sbjct: 227 DGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAAL-----SFNGTQYEGR 281
Query: 180 RAVPKE 185
R + +E
Sbjct: 282 RIIVRE 287
>AT3G46020.1 | Symbols: | RNA-binding protein, putative |
chr3:16923496-16924235 REVERSE
Length = 102
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 107 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 166
++FV L + T+ + F FG I + ++ D TQRP+GFGFITFDSE+ K L
Sbjct: 8 QLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL-- 65
Query: 167 TFHELNGKMVE 177
L+GK+V+
Sbjct: 66 --KSLDGKIVD 74
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 4 GKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV- 62
+LF+ +S T ++ LRQ F FG + EA +++D T R +GFGF+ F A + +
Sbjct: 7 AQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALK 66
Query: 63 -MEKHVIDGRTV 73
++ ++DGR +
Sbjct: 67 SLDGKIVDGRLI 78
>AT5G08695.1 | Symbols: | nucleic acid binding / nucleotide binding
| chr5:2829342-2834190 FORWARD
Length = 690
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 1 MDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAER 60
+D G+LF+ G+ + T EE L ++F FGD+ E ++ D+ T RG FV++ P A+
Sbjct: 224 LDAGRLFVHGLPYSTTEEELMEHFSKFGDISEVHLVLDKDTRSCRGMAFVLYLIPESAKM 283
Query: 61 VV--MEKHVIDGRTVEAKKAVPR 81
+ ++K GRT+ A PR
Sbjct: 284 AMDKLDKLPFQGRTLHILPAKPR 306
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 107 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 166
++FV GLP + TE + +F +FG I++V ++ D +T+ RG F+ + E + + K
Sbjct: 228 RLFVHGLPYSTTEEELMEHFSKFGDISEVHLVLDKDTRSCRGMAFVLYLIPESAKMAMDK 287
Query: 167 TFH-ELNGKMVEVKRAVPKELS 187
G+ + + A P+ +S
Sbjct: 288 LDKLPFQGRTLHILPAKPRAMS 309
>AT5G54900.1 | Symbols: ATRBP45A | ATRBP45A (RNA-BINDING PROTEIN
45A); RNA binding | chr5:22312638-22315352 FORWARD
Length = 387
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 20/168 (11%)
Query: 6 LFIGGISWDTNEERLRQYFQN-FGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
+F+G ++ + + L F+N +G V A ++ DRTTGR++G+GFV FAD + R + E
Sbjct: 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTE 215
Query: 65 KHVIDGRTVEAK--KAVPRDDQNXXXXXXXXXXXXXXXXX----XRTKKIFVGGLPSTIT 118
++G+ + + P ++N IFVGGL + +T
Sbjct: 216 ---MNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVT 272
Query: 119 ESDFKNYFDQFGTITDVVVMYDHNTQRPRG--FGFITFDSEEGVEKVL 164
+ + K+ F QFG + V + P G GF+ + ++ E L
Sbjct: 273 DDELKSIFGQFGELLHVKI--------PPGKRCGFVQYANKASAEHAL 312
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 86/195 (44%), Gaps = 16/195 (8%)
Query: 2 DPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERV 61
D L+IG + +E + F G+ A +++++ TG++ G+GF+ F SVAERV
Sbjct: 58 DVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERV 117
Query: 62 VMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESD 121
+ +G + + + R + IFVG L +T+
Sbjct: 118 L---QTYNGAPMPSTEQTFRLN-----WAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYM 169
Query: 122 FKNYFDQ-FGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKR 180
+ F +G++ V+ D T R +G+GF+ F E E++ + E+NG+ +
Sbjct: 170 LSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADEN--EQM--RAMTEMNGQYCSTR- 224
Query: 181 AVPKELSPSPSRGQL 195
P + P+ ++ L
Sbjct: 225 --PMRIGPAANKNAL 237
>AT1G03457.2 | Symbols: | RNA-binding protein, putative |
chr1:861109-864019 REVERSE
Length = 438
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/268 (22%), Positives = 108/268 (40%), Gaps = 42/268 (15%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
KLF+G + E +L F+ F V E I+K++TT RG F+ A++V+
Sbjct: 13 KLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVINS 72
Query: 65 KHVIDGRTVEAKKAVP---RDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESD 121
H KK +P Q K+FVG LP ++E++
Sbjct: 73 FH--------NKKTLPGASSPLQVKYADGELERLDVLDCSCNPEHKLFVGMLPKNVSETE 124
Query: 122 FKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMV----- 176
++ F ++GTI D+ ++ + Q +G F+ ++S+E + LNG+ +
Sbjct: 125 VQSLFSEYGTIKDLQILRG-SLQTSKGCLFLKYESKEQAVAAM----EALNGRHIMEGAN 179
Query: 177 ----------EVKRAVPKELSPSPSRGQLGGYSYAMSRVGSFANGFTQGYNPGMVGGHGL 226
E +R + L +L + +M G+ + YN G+G
Sbjct: 180 VPLIVKWADTEKERQARRLLKVQSHVSRLDPQNPSM--FGALPMSYVPPYN-----GYGY 232
Query: 227 RIDG----RLSPVTVGRSGYPLLSPNYG 250
+ G L P+ + + ++SPN G
Sbjct: 233 HVPGTYGYMLPPIQTQHAFHNVISPNQG 260
>AT1G03457.1 | Symbols: | RNA-binding protein, putative |
chr1:861109-864019 REVERSE
Length = 429
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 107/265 (40%), Gaps = 45/265 (16%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
KLF+G + E +L F+ F V E I+K++TT RG F+ A++V+
Sbjct: 13 KLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADKVINS 72
Query: 65 KHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFKN 124
H KK +P K+FVG LP ++E++ ++
Sbjct: 73 FH--------NKKTLP------GASSPLQVKYADGELERLEHKLFVGMLPKNVSETEVQS 118
Query: 125 YFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMV-------- 176
F ++GTI D+ ++ + Q +G F+ ++S+E + LNG+ +
Sbjct: 119 LFSEYGTIKDLQILRG-SLQTSKGCLFLKYESKEQAVAAM----EALNGRHIMEGANVPL 173
Query: 177 -------EVKRAVPKELSPSPSRGQLGGYSYAMSRVGSFANGFTQGYNPGMVGGHGLRID 229
E +R + L +L + +M G+ + YN G+G +
Sbjct: 174 IVKWADTEKERQARRLLKVQSHVSRLDPQNPSM--FGALPMSYVPPYN-----GYGYHVP 226
Query: 230 G----RLSPVTVGRSGYPLLSPNYG 250
G L P+ + + ++SPN G
Sbjct: 227 GTYGYMLPPIQTQHAFHNVISPNQG 251
>AT1G22760.1 | Symbols: PAB3 | PAB3 (POLY(A) BINDING PROTEIN 3); RNA
binding | chr1:8055588-8058788 FORWARD
Length = 660
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 73/171 (42%), Gaps = 26/171 (15%)
Query: 4 GKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAE---- 59
G +FI + + + L + F +FG ++ + D TGR++G+GFV F A+
Sbjct: 136 GNIFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAID 194
Query: 60 ----RVVMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPS 115
++ +K V G + ++ RD+ R ++V LP
Sbjct: 195 KLNGMLMNDKQVFVGHFIRRQERA-RDENTPTP---------------RFTNVYVKNLPK 238
Query: 116 TITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 166
I E + + F +FG I+ VVM D + R FGF+ F+ E + K
Sbjct: 239 EIGEDELRKTFGKFGVISSAVVMRDQSGNS-RCFGFVNFECTEAAASAVEK 288
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 77/173 (44%), Gaps = 8/173 (4%)
Query: 6 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 65
+++ + + E+ LR+ F FG + AV+M+D++ G +R FGFV F A V +
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQS-GNSRCFGFVNFECTEAAASAVEKM 289
Query: 66 HVID--GRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFK 123
+ I + +A + ++ + +++ L ++ + K
Sbjct: 290 NGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLK 349
Query: 124 NYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMV 176
F ++G +T VM + RGFGF+ + + E + L E+NGKM+
Sbjct: 350 EMFSEYGNVTSSKVMLNPQGMS-RGFGFVAYSNPEEALRAL----SEMNGKMI 397
>AT1G60000.1 | Symbols: | 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative |
chr1:22097343-22098205 REVERSE
Length = 258
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 80/183 (43%), Gaps = 21/183 (11%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 62
KL+ G + ++ + L Q Q+F + ++ +R TG++RGF FV ++ ++
Sbjct: 86 KLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDN 145
Query: 63 MEKHVIDGRTVE---AKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITE 119
++ GR ++ A K P + K+FVG L T+T
Sbjct: 146 LDGTEYLGRALKVNFADKPKPNKEP---------------LYPETEHKLFVGNLSWTVTS 190
Query: 120 SDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTF-HELNGKMVEV 178
F + G + V++D +T R RG+GF+ + S+ +E L EL G+ + V
Sbjct: 191 ESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRV 250
Query: 179 KRA 181
A
Sbjct: 251 NLA 253
>AT1G71770.1 | Symbols: PAB5 | PAB5 (POLY(A)-BINDING PROTEIN); RNA
binding | chr1:26994439-26997109 REVERSE
Length = 668
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 73/166 (43%), Gaps = 18/166 (10%)
Query: 4 GKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV- 62
G +FI + + + L + F +FG ++ + D GR++G+GFV F A+ +
Sbjct: 132 GNVFIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAID 190
Query: 63 -MEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESD 121
+ +++ + V V R D+ ++V LP IT+ +
Sbjct: 191 KLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFT----------NVYVKNLPKEITDDE 240
Query: 122 FKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEE----GVEKV 163
K F ++G I+ VVM D + R FGF+ F S E VEK+
Sbjct: 241 LKKTFGKYGDISSAVVMKDQSGNS-RSFGFVNFVSPEAAAVAVEKM 285
>AT2G22090.1 | Symbols: UBA1A | UBA1A; AU-rich element binding / RNA
binding | chr2:9395651-9397530 REVERSE
Length = 343
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
K+F+ G+ W+T E L F+ +G++ E ++ D+ TG+A+GFGFV+F A+ + E
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKE 164
Query: 65 -KHVIDGRTVEAKKA 78
K I RT + A
Sbjct: 165 PKKRILNRTATCQLA 179
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%)
Query: 106 KKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL 164
+KIFV GLP T F+ +G I + V+ D T + +GFGF+ F + +G ++ L
Sbjct: 104 RKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEAL 162
>AT2G22090.2 | Symbols: UBA1A | UBA1A; RNA binding |
chr2:9396487-9397530 REVERSE
Length = 347
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
K+F+ G+ W+T E L F+ +G++ E ++ D+ TG+A+GFGFV+F A+ + E
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKE 164
Query: 65 -KHVIDGRTVEAKKA 78
K I RT + A
Sbjct: 165 PKKRILNRTATCQLA 179
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%)
Query: 106 KKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL 164
+KIFV GLP T F+ +G I + V+ D T + +GFGF+ F + +G ++ L
Sbjct: 104 RKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEAL 162
>AT2G22100.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:9399477-9400625 REVERSE
Length = 382
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 34/47 (72%)
Query: 6 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVF 52
+F+ G+ WDT E L+ F+ +G++ E ++ D+ TGRA+GFGFV+F
Sbjct: 165 IFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLF 211
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%)
Query: 106 KKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLY 165
+ IFV GL T + K F+ +G IT+ V+ D +T R +GFGF+ F + +G L
Sbjct: 163 RNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAALK 222
Query: 166 KTFHELNGKMVEVKRAVP 183
+ + V A P
Sbjct: 223 NPEKRMYNRTVSCLPARP 240
>AT1G11650.2 | Symbols: ATRBP45B | ATRBP45B; RNA binding |
chr1:3914895-3917941 FORWARD
Length = 405
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 92/215 (42%), Gaps = 27/215 (12%)
Query: 6 LFIGGISWDTNEERLRQYFQ-NFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
+F+G ++ D + L + F+ ++ V A ++ DR TGR +G+GFV F+D S R + E
Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTE 216
Query: 65 KHVIDGRT-------VEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTI 117
+ + T +KK V +FVGGL +++
Sbjct: 217 MNGVPCSTRPMRIGPAASKKGV----TGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASV 272
Query: 118 TESDFKNYFDQFGTITDVVVMYDHNTQRPRG--FGFITFDSEEGVEKVLYKTFH--ELNG 173
T+ KN F Q+G I V + P G GF+ F + E+ L + + +L G
Sbjct: 273 TDDHLKNVFSQYGEIVHVKI--------PAGKRCGFVQFSEKSCAEEAL-RMLNGVQLGG 323
Query: 174 KMVEVK--RAVPKELSPSPSRGQLGGYSYAMSRVG 206
V + R+ + S PS+ GGY + G
Sbjct: 324 TTVRLSWGRSPSNKQSGDPSQFYYGGYGQGQEQYG 358
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 87/204 (42%), Gaps = 19/204 (9%)
Query: 6 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 65
L+IG + + +E L F + G++V A +++++ TG+ G+GF+ FA + AERV+
Sbjct: 64 LWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTF 123
Query: 66 HVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFKNY 125
+ +P IFVG L + +T+
Sbjct: 124 N---------NAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYILLET 174
Query: 126 FD-QFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKRAVPK 184
F + ++ V+ D T R +G+GF+ F E E++ + E+NG + P
Sbjct: 175 FRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDES--EQI--RAMTEMNGVPCSTR---PM 227
Query: 185 ELSPSPSRGQLGGY--SYAMSRVG 206
+ P+ S+ + G SY S G
Sbjct: 228 RIGPAASKKGVTGQRDSYQSSAAG 251
>AT1G54080.1 | Symbols: UBP1A | UBP1A; mRNA 3'-UTR binding |
chr1:20187591-20190492 REVERSE
Length = 426
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 83/182 (45%), Gaps = 35/182 (19%)
Query: 6 LFIGGISWDTNEERLRQYFQNFGDVVEA-VIMKDRTTGRARGFGFVVFADPSVAERVVME 64
++ G I E L++ F + G + +I KD+++ +GFV + D A +M
Sbjct: 65 VYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS-----YGFVHYFDRRCASMAIMT 119
Query: 65 ---KHVIDGRTVEAKKAVP---RDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTIT 118
+H+ G+ ++ A R+D + IFVG L +T
Sbjct: 120 LNGRHIF-GQPMKVNWAYATGQREDTSSHF------------------NIFVGDLSPEVT 160
Query: 119 ESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEV 178
++ + F F + +D VM+D T R RGFGF++F +++ + + +E+NGK V
Sbjct: 161 DAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAI----NEMNGKWVSS 216
Query: 179 KR 180
++
Sbjct: 217 RQ 218
>AT3G14100.1 | Symbols: | oligouridylate-binding protein, putative
| chr3:4673034-4675957 FORWARD
Length = 427
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 84/182 (46%), Gaps = 35/182 (19%)
Query: 6 LFIGGISWDTNEERLRQYFQNFGDVVEA-VIMKDRTTGRARGFGFVVFADPSVAERVVME 64
+++G I E L++ F + G V + +I KD+++ +GFV + D A ++
Sbjct: 61 VYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS-----YGFVHYFDRRSAALAILS 115
Query: 65 ---KHVIDGRTVEAKKAVP---RDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTIT 118
+H+ G+ ++ A R+D + IFVG L +T
Sbjct: 116 LNGRHLF-GQPIKVNWAYATGQREDTSSHF------------------NIFVGDLSPEVT 156
Query: 119 ESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEV 178
++ F F + +D VM+D T R RGFGF++F +++ + + +E+NGK +
Sbjct: 157 DATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAI----NEMNGKWLSS 212
Query: 179 KR 180
++
Sbjct: 213 RQ 214
>AT2G18510.1 | Symbols: EMB2444 | EMB2444 (EMBRYO DEFECTIVE 2444);
RNA binding | chr2:8038636-8040599 REVERSE
Length = 363
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 21/184 (11%)
Query: 6 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 65
+++GG+ +EE L + F G VV + KDR T + +GF+ + A+ +
Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVL 86
Query: 66 HVID--GRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFK 123
++I G+ + KA +D ++ +F+G L + E
Sbjct: 87 NMIKLHGKPIRVNKAS-QDKKSLDVGA----------------NLFIGNLDPDVDEKLLY 129
Query: 124 NYFDQFGTI-TDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK-TFHELNGKMVEVKRA 181
+ F FG I ++ +M D +T RGFGFI++DS E + + T L+ + + V A
Sbjct: 130 DTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYA 189
Query: 182 VPKE 185
K+
Sbjct: 190 YKKD 193
>AT5G04810.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr5:1390050-1393761 FORWARD
Length = 952
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 107 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMY-DHNTQRPRGFGFITFDSEEGVEKVLY 165
KIFVG LP+ I + +F+ +F QFG I +V+++ H ++ GFGFI + +E+ K +
Sbjct: 166 KIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGFGFIIYAAEKSAMKAVE 225
Query: 166 KTFHELNGKMVEVK 179
E +G+++ VK
Sbjct: 226 FDGVEFHGRILTVK 239
>AT2G37510.1 | Symbols: | RNA-binding protein, putative |
chr2:15750190-15751582 REVERSE
Length = 142
Score = 55.5 bits (132), Expect = 8e-08, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 40/60 (66%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
+LF+ G+S T E+L+ F +FG +V+A ++ DR +GR++GFGFV +A AE+ E
Sbjct: 35 RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAE 94
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 105 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL 164
+ ++FV GL T ++ F FG + D V+ D ++ R +GFGF+T+ + E EK
Sbjct: 33 SPRLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAK 92
Query: 165 YKTFHELNGKMVE 177
E+N K ++
Sbjct: 93 ----AEMNAKFLD 101
>AT1G48920.1 | Symbols: ATNUC-L1, PARL1 | ATNUC-L1/PARL1 (PARALLEL
1); nucleic acid binding | chr1:18101854-18105090
FORWARD
Length = 557
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 77/175 (44%), Gaps = 15/175 (8%)
Query: 6 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 65
LF +S++ + +F+ G+VV+ +R G RGFG V FA A++ +E
Sbjct: 299 LFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQK-ALEF 357
Query: 66 H--VIDGRTVEAKKAVPRDDQNXXXX-XXXXXXXXXXXXXXRTKKIFVGGLPSTITESDF 122
H + GR + A R ++ KKIFV G ++++E D
Sbjct: 358 HGRPLLGREIRLDIAQERGERGERPAFTPQSGNFRSGGDGGDEKKIFVKGFDASLSEDDI 417
Query: 123 KN----YFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNG 173
KN +F G I +V V D +T +G ++ F EG EK L ELNG
Sbjct: 418 KNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFS--EGKEKAL-----ELNG 465
>AT2G19380.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:8390938-8393686 FORWARD
Length = 613
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 34/47 (72%)
Query: 6 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVF 52
+F+ G WDT +E L+ F+++G++ E ++ D+ TGR +G+GFV+F
Sbjct: 410 IFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMF 456
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 40/79 (50%)
Query: 106 KKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLY 165
+ IFV G T+ + K F+ +G I + V+ D +T R +G+GF+ F + +G + L
Sbjct: 408 RNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALK 467
Query: 166 KTFHELNGKMVEVKRAVPK 184
+ + ++V A K
Sbjct: 468 RPEKRMYNRIVVCNLASEK 486
>AT1G49600.1 | Symbols: ATRBP47A | ATRBP47A (ARABIDOPSIS THALIANA
RNA-BINDING PROTEIN 47A); RNA binding |
chr1:18360904-18363818 REVERSE
Length = 445
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 74/183 (40%), Gaps = 22/183 (12%)
Query: 6 LFIGGISWDTNEERLRQYFQ-NFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
+F+G ++ D ++ L + F + V A ++ D TGR++G+GFV F D + R + E
Sbjct: 215 IFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTE 274
Query: 65 KH--VIDGRTVEAKKAVPRD---------DQNXXXXXXXXXXXXXXXXXXRTKKIFVGGL 113
+ R + A P+ Q IFVGGL
Sbjct: 275 MNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGGL 334
Query: 114 PSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNG 173
+ +TE D F FG + V + +G GF+ F + + E+ + LNG
Sbjct: 335 DADVTEEDLMQPFSDFGEVVSVKIPVG------KGCGFVQFANRQSAEEAI----GNLNG 384
Query: 174 KMV 176
++
Sbjct: 385 TVI 387
>AT3G13570.1 | Symbols: SCL30a | SCL30a (SC35-like splicing factor
30a); RNA binding | chr3:4429571-4431609 REVERSE
Length = 262
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 3 PGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV 62
P L + + D +E LR+ F+ FG V + + +D TG RGFGF+ F DP+ A
Sbjct: 36 PTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADA---A 92
Query: 63 MEKHVIDG 70
KH +DG
Sbjct: 93 EAKHQMDG 100
>AT5G54580.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:22188558-22189882 FORWARD
Length = 156
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 6 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV--M 63
LF+ G+S T E LR F FG+V +A ++ DR +G ++GFGFV +A + + + M
Sbjct: 58 LFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGM 117
Query: 64 EKHVIDGRTVEAKKAVPRDD 83
+ +DG + A+ A PR+
Sbjct: 118 DGKFLDGWVIFAEYARPREQ 137
>AT2G27330.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:11702428-11703641 REVERSE
Length = 116
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 7/86 (8%)
Query: 6 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME- 64
LF+ GIS+ + EE L Q F +G V++ ++ D+ R +GF +V F+ AE+ ++E
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLEL 82
Query: 65 -KHVIDGR-----TVEAKKAVPRDDQ 84
++DGR T +A K P D +
Sbjct: 83 NAQLVDGRVVILDTTKAAKHNPPDTK 108
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 105 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL 164
+ +FV G+ + TE F Q+G + V V+ D RP+GF ++TF S+E EK L
Sbjct: 20 SSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKAL 79
Query: 165 YKTFHELNGKMVE 177
ELN ++V+
Sbjct: 80 L----ELNAQLVD 88
>AT1G55310.2 | Symbols: ATSCL33, SCL33, SR33 | SR33 (SC35-like
splicing factor 33); RNA binding |
chr1:20634343-20636240 FORWARD
Length = 222
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 3 PGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV 62
P L + + D +E LR+ F+ FG V + + +D TG RGFGFV F DP+ A
Sbjct: 35 PTSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADA---A 91
Query: 63 MEKHVIDG 70
KH +DG
Sbjct: 92 DAKHHMDG 99
>AT1G55310.1 | Symbols: ATSCL33, SCL33, SR33 | SR33 (SC35-like
splicing factor 33); RNA binding |
chr1:20634343-20636161 FORWARD
Length = 220
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 3 PGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV 62
P L + + D +E LR+ F+ FG V + + +D TG RGFGFV F DP+ A
Sbjct: 35 PTSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADA---A 91
Query: 63 MEKHVIDG 70
KH +DG
Sbjct: 92 DAKHHMDG 99
>AT3G53460.2 | Symbols: CP29 | CP29 (chloroplast 29 kDa
ribonucleoprotein); RNA binding / poly(U) binding |
chr3:19830716-19832401 REVERSE
Length = 342
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 62
+L++G +SW ++ L F G VVEA ++ DR +GR++GFGFV + ++ +
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 63 MEKHVIDGRTVEAKKAVPR 81
+ +DGR + +A R
Sbjct: 318 LNGADLDGRQIRVSEAEAR 336
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 107 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 166
+++VG L + + +N F++ G + + V+YD ++ R +GFGF+T S + V+K +
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAI-- 315
Query: 167 TFHELNGKMVEVKRAVPKELSPSPSRGQL 195
+ LNG ++ ++ E P RGQ
Sbjct: 316 --NSLNGADLDGRQIRVSEAEARPPRGQF 342
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 34/49 (69%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFA 53
KLF+G +S++ + +L Q F++ G+V ++ D+ TGR+RGFGFV +
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMS 148
>AT3G53460.1 | Symbols: CP29 | CP29 (chloroplast 29 kDa
ribonucleoprotein); RNA binding / poly(U) binding |
chr3:19830716-19832401 REVERSE
Length = 342
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-- 62
+L++G +SW ++ L F G VVEA ++ DR +GR++GFGFV + ++ +
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 63 MEKHVIDGRTVEAKKAVPR 81
+ +DGR + +A R
Sbjct: 318 LNGADLDGRQIRVSEAEAR 336
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 107 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 166
+++VG L + + +N F++ G + + V+YD ++ R +GFGF+T S + V+K +
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAI-- 315
Query: 167 TFHELNGKMVEVKRAVPKELSPSPSRGQL 195
+ LNG ++ ++ E P RGQ
Sbjct: 316 --NSLNGADLDGRQIRVSEAEARPPRGQF 342
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 34/49 (69%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFA 53
KLF+G +S++ + +L Q F++ G+V ++ D+ TGR+RGFGFV +
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMS 148
>AT4G19610.1 | Symbols: | RNA binding | chr4:10677492-10681633
FORWARD
Length = 816
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%)
Query: 1 MDPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAER 60
+D G+LF+ + + EE L ++F FG + E ++ D+ T R+RG ++++ P A R
Sbjct: 291 LDTGRLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAAR 350
Query: 61 VVME 64
+ E
Sbjct: 351 AMEE 354
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 105 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITF 154
T ++FV LP T TE + +F FG I++V ++ D T+R RG +I +
Sbjct: 293 TGRLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILY 342
>AT2G16940.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:7349951-7354134 REVERSE
Length = 561
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 77/182 (42%), Gaps = 7/182 (3%)
Query: 2 DPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADP-SVAER 60
D +F I+ E + ++F G V + I+ DR + R+RG G+V F D SV
Sbjct: 180 DQRTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMA 239
Query: 61 VVMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITES 120
+ + + G+ V K + + ++++VG L ++E
Sbjct: 240 IALSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARRLYVGNLHINMSED 299
Query: 121 DFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKR 180
D + F+ FG++ V V D T +GFGF+ F E L LNG++ R
Sbjct: 300 DLRKVFESFGSVELVQVPRDE-TGLCKGFGFVQFARLEDARNAL-----NLNGQLEIAGR 353
Query: 181 AV 182
A+
Sbjct: 354 AI 355
>AT2G21690.1 | Symbols: | RNA-binding protein, putative |
chr2:9277194-9277677 REVERSE
Length = 117
Score = 52.4 bits (124), Expect = 6e-07, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 7 FIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEKH 66
F+ G+ DT+E+ L F FG+V+++ I+ DR TG++R FGFV F + +M
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIMIMD 69
Query: 67 VIDGRT 72
V + R+
Sbjct: 70 VEESRS 75
Score = 49.7 bits (117), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 109 FVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGV-EKVLYKT 167
FV GL E D + F +FG + D ++YD +T + R FGF+TF+ E+ + + ++
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIMIMD 69
Query: 168 FHELNGKMVEV 178
E K V V
Sbjct: 70 VEESRSKCVNV 80
>AT1G07350.1 | Symbols: | transformer serine/arginine-rich
ribonucleoprotein, putative | chr1:2257730-2260099
REVERSE
Length = 382
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 108 IFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKT 167
++V GL +TE D +++F + G +TDV ++ D T+ RGFGFI+ S + +
Sbjct: 77 LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSL 136
Query: 168 FHE-LNGKMVEVKRA 181
H L G+++ V++A
Sbjct: 137 DHSVLQGRVITVEKA 151
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 2 DPG-KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAER 60
+PG L++ G+S E L +F G V + ++ D T +RGFGF+ A R
Sbjct: 72 NPGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANR 131
Query: 61 VV--MEKHVIDGRTVEAKKA 78
+ ++ V+ GR + +KA
Sbjct: 132 CIRSLDHSVLQGRVITVEKA 151
>AT1G11650.1 | Symbols: ATRBP45B | ATRBP45B; RNA binding |
chr1:3914895-3917301 FORWARD
Length = 306
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 87/204 (42%), Gaps = 19/204 (9%)
Query: 6 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 65
L+IG + + +E L F + G++V A +++++ TG+ G+GF+ FA + AERV+
Sbjct: 64 LWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTF 123
Query: 66 HVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFKNY 125
+ +P IFVG L + +T+
Sbjct: 124 N---------NAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYILLET 174
Query: 126 FD-QFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKRAVPK 184
F + ++ V+ D T R +G+GF+ F E E++ + E+NG + P
Sbjct: 175 FRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDES--EQI--RAMTEMNGVPCSTR---PM 227
Query: 185 ELSPSPSRGQLGGY--SYAMSRVG 206
+ P+ S+ + G SY S G
Sbjct: 228 RIGPAASKKGVTGQRDSYQSSAAG 251
>AT1G60900.1 | Symbols: | U2 snRNP auxiliary factor large subunit,
putative | chr1:22427673-22431471 FORWARD
Length = 589
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 38/57 (66%)
Query: 3 PGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAE 59
P ++F+GG+ + E ++R+ ++FG + ++KDR TG ++G+ F V+ DPSV +
Sbjct: 374 PDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTD 430
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 107 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 166
+IFVGGLP TE + + FG + ++ D T +G+ F + + V +
Sbjct: 376 RIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVY-QDPSVTDIACA 434
Query: 167 TFH--ELNGKMVEVKRAVPKELSPSPSRGQLGGYS 199
+ ++ K + V+RA+ + P P + ++ Y+
Sbjct: 435 ALNGIKMGDKTLTVRRAIQGAIQPKPEQEEVLLYA 469
>AT5G47320.1 | Symbols: RPS19 | RPS19 (40S ribosomal protein S19);
RNA binding | chr5:19221028-19222178 FORWARD
Length = 212
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 34/48 (70%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVF 52
KL+IGG+S T+E L+ F +F V EA +M ++ TGR+RG+GFV F
Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNF 79
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 107 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 166
K+++GGL E K+ F F +T+ VM + T R RG+GF+ F SE+ +
Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91
Query: 167 TF-HELNG 173
ELNG
Sbjct: 92 MNGQELNG 99
>AT5G51300.3 | Symbols: | splicing factor-related |
chr5:20867107-20869521 REVERSE
Length = 804
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 6 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV--M 63
L+IG + ++ L F +FG++V A ++KDR TG ++G+GFV +AD +A V M
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 64 EKHVIDGRTVEAKKA 78
+ +GRT+ + A
Sbjct: 542 NGYRFEGRTLAVRIA 556
>AT5G51300.2 | Symbols: | splicing factor-related |
chr5:20867107-20869521 REVERSE
Length = 804
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 6 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV--M 63
L+IG + ++ L F +FG++V A ++KDR TG ++G+GFV +AD +A V M
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 64 EKHVIDGRTVEAKKA 78
+ +GRT+ + A
Sbjct: 542 NGYRFEGRTLAVRIA 556
>AT5G51300.1 | Symbols: | splicing factor-related |
chr5:20867107-20869521 REVERSE
Length = 804
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 6 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV--M 63
L+IG + ++ L F +FG++V A ++KDR TG ++G+GFV +AD +A V M
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 64 EKHVIDGRTVEAKKA 78
+ +GRT+ + A
Sbjct: 542 NGYRFEGRTLAVRIA 556
>AT1G54080.2 | Symbols: UBP1A | UBP1A; mRNA 3'-UTR binding |
chr1:20187591-20190492 REVERSE
Length = 430
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 83/186 (44%), Gaps = 39/186 (20%)
Query: 6 LFIGGISWDTNEERLRQYFQNFGDVVEA-VIMKDRTTGRARGFGFVVFADPSVAERVVME 64
++ G I E L++ F + G + +I KD+++ +GFV + D A +M
Sbjct: 65 VYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS-----YGFVHYFDRRCASMAIMT 119
Query: 65 ---KHVIDGRTVEAKKAVP---RDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTIT 118
+H+ G+ ++ A R+D + IFVG L +T
Sbjct: 120 LNGRHIF-GQPMKVNWAYATGQREDTSSHF------------------NIFVGDLSPEVT 160
Query: 119 ESDFKNYFDQFGTIT----DVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGK 174
++ + F F + + D VM+D T R RGFGF++F +++ + + +E+NGK
Sbjct: 161 DAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAI----NEMNGK 216
Query: 175 MVEVKR 180
V ++
Sbjct: 217 WVSSRQ 222
>AT1G73530.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:27647462-27649047 REVERSE
Length = 181
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
KL++ G+S+ T E+ LR F+ FG+++ ++ D+ R +GF F+ + A + +
Sbjct: 78 KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQG 137
Query: 65 KH--VIDGRTVEAKKAVPRDDQN 85
H +DGR + ++A R D +
Sbjct: 138 MHGKFLDGRVIFVEEAKTRSDMS 160
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 10/94 (10%)
Query: 107 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 166
K++V GL TE ++ F+QFG + + ++ D RP+GF F+ +++EE K +
Sbjct: 78 KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQG 137
Query: 167 TFHE-LNGKMVEVK---------RAVPKELSPSP 190
+ L+G+++ V+ RA P+ P P
Sbjct: 138 MHGKFLDGRVIFVEEAKTRSDMSRAKPRRDFPKP 171
>AT1G71800.1 | Symbols: | cleavage stimulation factor, putative |
chr1:27003268-27005512 FORWARD
Length = 461
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 6 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVA--ERVVM 63
+F+G I +D EE+LR+ G VV ++ DR TG+ +G+GF + D A R +
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70
Query: 64 EKHVIDGRTV 73
+ + I+GR +
Sbjct: 71 QSYEINGRQL 80
>AT2G47310.1 | Symbols: | flowering time control protein-related /
FCA gamma-related | chr2:19430861-19433916 FORWARD
Length = 512
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 66/158 (41%), Gaps = 12/158 (7%)
Query: 4 GKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFA---DPSVAER 60
KL++ IS E +RQ F+ +G+V E ++ KD+ TG + F+ + + + A
Sbjct: 110 AKLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGERAAYCFIKYKKVEEGNAAIA 169
Query: 61 VVMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITES 120
+ E+ G + K ++ K++V L T+
Sbjct: 170 ALTEQFTFPGEMLPVKVRFAEAERERIGFAPVQLPD--------NPKLYVRCLNKQTTKM 221
Query: 121 DFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEE 158
+ F ++G I D+ + D + + RG+ F+ F +E
Sbjct: 222 EVNEVFSRYGIIEDIYMALD-DMKICRGYAFVQFSCKE 258
>AT1G17370.2 | Symbols: UBP1B | UBP1B (OLIGOURIDYLATE BINDING
PROTEIN 1B) | chr1:5951835-5954818 REVERSE
Length = 416
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 78/178 (43%), Gaps = 35/178 (19%)
Query: 6 LFIGGISWDTNEERLRQYFQNFGDVVEA-VIMKDRTTGRARGFGFVVFADPSVAERVVME 64
+++G I E L++ F G V +I K++++ +GFV + D A ++
Sbjct: 56 VYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSS-----YGFVHYFDRRSAGLAILS 110
Query: 65 ---KHVIDGRTVEAKKAVP---RDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTIT 118
+H+ G+ ++ A R+D + IFVG L +T
Sbjct: 111 LNGRHLF-GQPIKVNWAYASGQREDTSSHF------------------NIFVGDLSPEVT 151
Query: 119 ESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMV 176
++ F + T +D VM+D T R RGFGF++F +++ + + E+ GK +
Sbjct: 152 DAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAI----DEITGKWL 205
>AT1G17370.1 | Symbols: UBP1B | UBP1B (OLIGOURIDYLATE BINDING
PROTEIN 1B); mRNA 3'-UTR binding | chr1:5951835-5954818
REVERSE
Length = 419
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 78/178 (43%), Gaps = 35/178 (19%)
Query: 6 LFIGGISWDTNEERLRQYFQNFGDVVEA-VIMKDRTTGRARGFGFVVFADPSVAERVVME 64
+++G I E L++ F G V +I K++++ +GFV + D A ++
Sbjct: 56 VYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSS-----YGFVHYFDRRSAGLAILS 110
Query: 65 ---KHVIDGRTVEAKKAVP---RDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTIT 118
+H+ G+ ++ A R+D + IFVG L +T
Sbjct: 111 LNGRHLF-GQPIKVNWAYASGQREDTSSHF------------------NIFVGDLSPEVT 151
Query: 119 ESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMV 176
++ F + T +D VM+D T R RGFGF++F +++ + + E+ GK +
Sbjct: 152 DAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAI----DEITGKWL 205
>AT3G54770.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:20284841-20286709 REVERSE
Length = 218
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 20 LRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK-HVIDGRTVEAKKA 78
+ +F +GD++EAVI+ D+ T R++G+GFV F D A R + +I+GR A
Sbjct: 1 MYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACEDSTPIINGRRANCNLA 60
>AT3G20930.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:7331745-7333755 FORWARD
Length = 374
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 34/46 (73%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFV 50
KLFI G+S+ T+E+ LR F+ FG++VE I+ D+ + R++G+ F+
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFL 328
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 104 RTKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKV 163
+TKK+F+ GL +E + F+ FG + +V ++ D ++R +G+ F+ + +EE
Sbjct: 280 KTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTA 339
Query: 164 LYKTFHELNGKMV 176
L E+NGK++
Sbjct: 340 L----KEMNGKII 348
>AT3G18610.1 | Symbols: ATRANGAP1 | ATRANGAP1 (RAN GTPASE-ACTIVATING
PROTEIN 1); nucleic acid binding | chr3:6404276-6407828
REVERSE
Length = 636
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 98/224 (43%), Gaps = 22/224 (9%)
Query: 6 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV-ME 64
LF G +S+ + +F+ G+VV+ V + G +G+G + FA P A++ + M
Sbjct: 386 LFAGNLSYQIARSDIENFFKEAGEVVD-VRLSSFDDGSFKGYGHIEFASPEEAQKALEMN 444
Query: 65 KHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFKN 124
++ GR V R D +++ I+V G S++ E + K
Sbjct: 445 GKLLLGRDV-------RLDLANERGTPRNSNPGRKGEGSQSRTIYVRGFSSSLGEDEIKK 497
Query: 125 ----YFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKR 180
+F + G +T V V D T RGF +I S G ++ L + E+ G + V+
Sbjct: 498 ELRSHFSKCGEVTRVHVPTDRETGASRGFAYIDLTS--GFDEALQLSGSEIGGGNIHVEE 555
Query: 181 AVPKELSP------SPSRG-QLGGYSYAMSRVGSFANGFTQGYN 217
+ P++ +P+RG G +S R G F++ +G +
Sbjct: 556 SRPRDSDEGRSSNRAPARGAPRGRHSDRAPRGGRFSDRAPRGRH 599
>AT3G55340.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:20526649-20528809 FORWARD
Length = 597
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 47/77 (61%), Gaps = 4/77 (5%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIM-KDRTTGRARGFGFVVFADP-SVAERVV 62
+++IG ++WDT E +R+ F + V+ +V + K++ TG +G+ V F D SVA +
Sbjct: 263 RVYIGNLAWDTTERDIRKLFSDC--VINSVRLGKNKETGEFKGYAHVDFKDSVSVAIALK 320
Query: 63 MEKHVIDGRTVEAKKAV 79
+++ VI GR V+ A+
Sbjct: 321 LDQQVICGRPVKICCAL 337
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 107 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYK 166
K++VGG+P TE + ++YF G I V G FITFD+E+G ++ L
Sbjct: 162 KLYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKMRPEDGAFSGIAFITFDTEDGAKRALAF 221
Query: 167 TFHELNGKMVEVKRAVPKELSPS-PSRGQLGGYSYAM 202
+ + + +++ V K +PS P R G++ M
Sbjct: 222 DRAAMGDRYLTIQQYV-KTTTPSIPRRKTSSGFAPEM 257
>AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:17362319-17363754 REVERSE
Length = 352
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 108 IFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKT 167
++VGG+P +TE D F Q+G I DV ++ D T + +GF F+ ++ + +L
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRST--IL--A 93
Query: 168 FHELNGKMV 176
LNG +V
Sbjct: 94 VDNLNGALV 102
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 33/49 (67%)
Query: 6 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFAD 54
+++GGI +D E L F +G++V+ +++D+ TG+++GF F+ + D
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYED 86
>AT4G36690.3 | Symbols: ATU2AF65A | ATU2AF65A; RNA binding |
chr4:17294426-17297613 REVERSE
Length = 565
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 37/57 (64%)
Query: 3 PGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAE 59
P ++F+GG+ + E ++R+ ++FG + ++KDR TG ++G+ F V+ D SV +
Sbjct: 358 PDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTD 414
>AT1G07350.2 | Symbols: | transformer serine/arginine-rich
ribonucleoprotein, putative | chr1:2258814-2259584
REVERSE
Length = 129
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 108 IFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKT 167
++V GL +TE D +++F + G +TDV ++ D T+ RGFGFI+ S + +
Sbjct: 47 LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSL 106
Query: 168 FHE-LNGKMVEVKR 180
H L G+++ V++
Sbjct: 107 DHSVLQGRVITVEK 120
>AT5G59860.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:24130688-24131675 FORWARD
Length = 157
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 9/65 (13%)
Query: 112 GLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTFHEL 171
GL + T+ + F F + + D TQRP+GFGFITF+SE+ +K L L
Sbjct: 77 GLSAYTTDQSLRQLFAPFARL-----IKDQQTQRPKGFGFITFESEDDAQKAL----KAL 127
Query: 172 NGKMV 176
NGK+V
Sbjct: 128 NGKIV 132
>AT4G36690.1 | Symbols: ATU2AF65A | ATU2AF65A; RNA binding |
chr4:17294143-17297613 REVERSE
Length = 573
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 37/57 (64%)
Query: 3 PGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAE 59
P ++F+GG+ + E ++R+ ++FG + ++KDR TG ++G+ F V+ D SV +
Sbjct: 358 PDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTD 414
>AT4G36690.2 | Symbols: ATU2AF65A | ATU2AF65A; RNA binding |
chr4:17294595-17297613 REVERSE
Length = 542
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 37/57 (64%)
Query: 3 PGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAE 59
P ++F+GG+ + E ++R+ ++FG + ++KDR TG ++G+ F V+ D SV +
Sbjct: 358 PDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTD 414
>AT1G16610.1 | Symbols: SR45 | SR45 (arginine/serine-rich 45); RNA
binding | chr1:5675918-5678679 REVERSE
Length = 414
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 6 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAER--VVM 63
L + +S + NE L++ F NFG+V+ I DR RG G+V F + AE+ + M
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 64 EKHVIDGRTVEA 75
+ IDG+ V+A
Sbjct: 160 DGAQIDGKVVKA 171
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 108 IFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKV-LYK 166
+ V L + E+ K F FG + V + D PRG G++ F + EK LY
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 167 TFHELNGKMVEV 178
+++GK+V+
Sbjct: 160 DGAQIDGKVVKA 171
>AT1G16610.2 | Symbols: SR45 | SR45 (arginine/serine-rich 45); RNA
binding | chr1:5675918-5678679 REVERSE
Length = 407
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 6 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAER--VVM 63
L + +S + NE L++ F NFG+V+ I DR RG G+V F + AE+ + M
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 64 EKHVIDGRTVEA 75
+ IDG+ V+A
Sbjct: 160 DGAQIDGKVVKA 171
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 108 IFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKV-LYK 166
+ V L + E+ K F FG + V + D PRG G++ F + EK LY
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEFKARADAEKAQLYM 159
Query: 167 TFHELNGKMVEV 178
+++GK+V+
Sbjct: 160 DGAQIDGKVVKA 171
>AT1G13690.1 | Symbols: ATE1 | ATE1 (ATPase E1); nucleic acid
binding | chr1:4693377-4694176 FORWARD
Length = 177
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 108 IFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKT 167
++VGGL + ES F FG I DV D Q+ R FGF+TF E +
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNM 74
Query: 168 F-HELNGKMVEVKRAVPKELS 187
EL G+++ V A+P+++
Sbjct: 75 DGAELYGRVLTVNYALPEKIK 95
>AT5G09880.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:3081647-3085180 REVERSE
Length = 527
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 64/154 (41%), Gaps = 7/154 (4%)
Query: 2 DPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADP-SVAER 60
D +F + E + ++F G V + ++ DR + R++G G++ F D SV
Sbjct: 166 DQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMA 225
Query: 61 VVMEKHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITES 120
+ + + G+ V K + +K++VG L ++E
Sbjct: 226 IALSGQLFLGQPVMVKPS------EAEKNLAQSNSTTVGGTGPADRKLYVGNLHFNMSEL 279
Query: 121 DFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITF 154
+ F+ FG + V + D T + +GFGFI F
Sbjct: 280 QLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQF 313
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFA--DPSVAERVV 62
KL++G + ++ +E +LRQ F+ FG V + D TG+ +GFGF+ F + S A ++
Sbjct: 266 KLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIA 325
Query: 63 ME-KHVIDGRTVE 74
+ K I GRT++
Sbjct: 326 LNGKLEIAGRTIK 338
>AT2G44710.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:18439977-18443704 FORWARD
Length = 809
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 66/155 (42%), Gaps = 25/155 (16%)
Query: 5 KLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
++F+G + +EE L++ F + G+V E I+K+ T +++G F+ FA A+R V E
Sbjct: 215 EIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKE 274
Query: 65 KHVIDGRTVEAKKAVPRDDQNXXXXXXXXXXXXXXXXXXRTKKIFVGGLPSTITESDFKN 124
+ + KK Q+ +FVG + T +
Sbjct: 275 ---LKSPMINGKKCGVTASQDNDT-------------------LFVGNICKIWTPEALRE 312
Query: 125 YFDQFGT--ITDVVVMYD-HNTQRPRGFGFITFDS 156
+G + D+ ++ D +N RG+ F+ F S
Sbjct: 313 KLKHYGVENMDDITLVEDSNNVNMNRGYAFLEFSS 347
>AT5G64200.2 | Symbols: ATSC35 | ATSC35 (ARABIDOPSIS THALIANA
ARGININE/SERINE-RICH SPLICING FACTOR 35, 35 KDA
PROTEIN); RNA binding | chr5:25699075-25700779 REVERSE
Length = 303
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 6 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV--M 63
L + I++ T + L F +G VV+ I +DR TG +RGF FV + A + V +
Sbjct: 18 LLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERL 77
Query: 64 EKHVIDGRTV 73
+ V+DGR +
Sbjct: 78 DGRVVDGREI 87
>AT5G64200.1 | Symbols: ATSC35 | ATSC35 (ARABIDOPSIS THALIANA
ARGININE/SERINE-RICH SPLICING FACTOR 35, 35 KDA
PROTEIN); RNA binding | chr5:25699075-25700779 REVERSE
Length = 303
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 6 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV--M 63
L + I++ T + L F +G VV+ I +DR TG +RGF FV + A + V +
Sbjct: 18 LLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERL 77
Query: 64 EKHVIDGRTV 73
+ V+DGR +
Sbjct: 78 DGRVVDGREI 87
>AT5G04600.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:1323701-1325487 FORWARD
Length = 222
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 6 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAE------ 59
L+IG I E + +F FG V + +++ TG+++ FGF+ F DP VAE
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAM 121
Query: 60 --RVVMEKHVIDGRTVEAKKAVP 80
++ME H++ +E + P
Sbjct: 122 NDYLLME-HMLKVHVIEPENVKP 143
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 108 IFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVE 161
+++G +P E++ + +F QFGT+ V V + T + + FGFI F+ E E
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAE 115
>AT3G55460.1 | Symbols: SCL30 | SCL30 (SC35-like splicing factor
30); RNA binding | chr3:20572001-20574479 FORWARD
Length = 262
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%)
Query: 6 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFAD 54
L + I D E LR+ F+ FG V + I +D +G+ RGF FV F D
Sbjct: 49 LLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVD 97
>AT5G18810.1 | Symbols: SCL28 | SCL28 (SC35-like splicing factor
28); RNA binding | chr5:6268927-6271160 REVERSE
Length = 236
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 108 IFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITF----DSEEGVEKV 163
+ + LP +D ++ F++FG + D+ + ++ T PRGFGF+ + D+ E ++++
Sbjct: 49 LLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRM 108
Query: 164 LYKTF--HELNGKMVEVKRAVPKEL 186
+K E+ E R P+E+
Sbjct: 109 NHKVIGGREIAIVFAEENRKTPQEM 133
>AT4G20030.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:10846372-10847256 FORWARD
Length = 152
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 13/84 (15%)
Query: 107 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSE-------EG 159
KI V LP + +E K F FG I +V ++ D +R +G+ FI F S+ E
Sbjct: 41 KIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIET 100
Query: 160 VEKVLYKTFHELNGKMVEVKRAVP 183
+++ +Y NG+M+ + A P
Sbjct: 101 MDRRMY------NGRMIYIDIAKP 118
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 4 GKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFA--DPSVAERV 61
K+ + + + T+E+ L++ F FG++ E ++KD R++G+ F+ F D +
Sbjct: 40 SKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIE 99
Query: 62 VMEKHVIDGRTVEAKKAVP--RDDQ 84
M++ + +GR + A P RD Q
Sbjct: 100 TMDRRMYNGRMIYIDIAKPGKRDFQ 124
>AT2G43370.1 | Symbols: | U1 small nuclear ribonucleoprotein 70
kDa, putative | chr2:18020508-18022453 FORWARD
Length = 333
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 6 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 65
LF+G +S T E+ LR+ +G + +++ TG +RG+GFV + R +
Sbjct: 66 LFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDA 125
Query: 66 H--VIDGRTV 73
H +IDGR +
Sbjct: 126 HHSLIDGREI 135
>AT1G07360.1 | Symbols: | zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein |
chr1:2260560-2262793 REVERSE
Length = 481
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 106 KKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLY 165
K ++VGGL S I E D ++ F G I + ++ D + F+T+ S EG EK
Sbjct: 228 KTLYVGGLNSRILEQDIRDQFYAHGEIESIRILAD------KACAFVTYTSREGAEKAAQ 281
Query: 166 KTFHEL--NGKMVEVKRAVPK 184
+ + L NG+ +++ PK
Sbjct: 282 ELSNRLVINGQRLKLTWGRPK 302
>AT3G52660.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:19533576-19535713 FORWARD
Length = 471
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 34/52 (65%)
Query: 107 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEE 158
++++GG+P+ TE D K + G +T+V +M + ++ +G+ F+TF S++
Sbjct: 93 EVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKD 144
>AT3G52660.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:19533576-19535713 FORWARD
Length = 471
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 34/52 (65%)
Query: 107 KIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEE 158
++++GG+P+ TE D K + G +T+V +M + ++ +G+ F+TF S++
Sbjct: 93 EVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKD 144
>AT5G19960.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:6744031-6746135 FORWARD
Length = 337
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 1 MDPGK-LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAE 59
MD G +++GG+ +D EE +R+ F +G V+ I+ DR+ R + +GFV F++ A+
Sbjct: 3 MDDGNSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSV-RGKCYGFVTFSNRRSAD 61
Query: 60 RVV--MEKHVIDGRTVEAKKAVPR 81
+ M+ I GR V R
Sbjct: 62 DAIEDMDGKSIGGRAVRVNDVTTR 85
>AT5G19030.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:6357572-6359026 REVERSE
Length = 126
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 109 FVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTF 168
FV G +++E K F +FG +T+V ++ + T++ G+G++ F+S+E + +
Sbjct: 61 FVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAV---- 116
Query: 169 HELNGKM 175
+NGK+
Sbjct: 117 EAMNGKV 123
>AT5G51120.1 | Symbols: PABN1, ATPABN1 | ATPABN1/PABN1
(polyadenylate-binding protein 1); RNA binding / poly(A)
binding / protein binding | chr5:20796986-20798467
FORWARD
Length = 227
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 105 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL 164
++ I+VG + T + + +F GT+ V ++ D Q P+GF ++ F E V+ L
Sbjct: 102 SRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQ-PKGFAYVEFVEVEAVQNSL 160
Query: 165 YKTFHELNGKMVEV 178
EL+G+ ++V
Sbjct: 161 ILNESELHGRQIKV 174
>AT5G65260.1 | Symbols: | polyadenylate-binding protein family
protein / PABP family protein | chr5:26097727-26100210
REVERSE
Length = 220
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 105 TKKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL 164
+ +FVG + T + + +F GT+ V ++ D Q P+GF ++ F E V++ L
Sbjct: 91 ARSVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQ-PKGFAYVEFVEVEAVQEAL 149
Query: 165 YKTFHELNGKMVEV 178
EL+G+ ++V
Sbjct: 150 QLNESELHGRQLKV 163
>AT1G47490.2 | Symbols: ATRBP47C | ATRBP47C; RNA binding |
chr1:17427241-17428554 FORWARD
Length = 310
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 74/174 (42%), Gaps = 17/174 (9%)
Query: 29 DVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEKHVIDGRTVEAKKAVPRDDQNXXX 88
++V +++++ G + G+GFV F VA++V+ E +G T+ P DQ
Sbjct: 128 EIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLRE---FNGTTM------PNTDQPFRL 178
Query: 89 XXXXXXXXXXXXXXX-RTKKIFVGGLPSTITESDFKNYF-DQFGTITDVVVMYDHNTQRP 146
IFVG L ++++ F +++ ++ V+ D NT R
Sbjct: 179 NWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRS 238
Query: 147 RGFGFITFDSEEGVEKVLYKTFHELNGKMVEVKRAVPKELSPSPSRG--QLGGY 198
+G+GF+ F G E K E+NG + +P + G Q GGY
Sbjct: 239 KGYGFVRF----GDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQGGY 288
>AT4G03110.1 | Symbols: | RNA-binding protein, putative |
chr4:1376612-1379275 REVERSE
Length = 441
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Query: 6 LFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 65
LFI I + ++ L FQ+FG V+ A + D+ TG ++ FGFV + + A+ +
Sbjct: 351 LFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAI--- 407
Query: 66 HVIDGRTVEAKK---AVPRDDQN 85
+++GR + KK + RD N
Sbjct: 408 DMMNGRHLGGKKLKVQLKRDSNN 430
>AT2G35410.1 | Symbols: | 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative |
chr2:14905420-14906669 FORWARD
Length = 308
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 54/98 (55%), Gaps = 12/98 (12%)
Query: 106 KKIFVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVL- 164
+K+FV LP +++ +D F Q GT+ +V ++ + + RGF F+T S E + +
Sbjct: 95 RKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKN-RGFAFVTMASGEEAQAAID 153
Query: 165 -YKTFHELNGKMVEV------KRAVPKELS--PSPSRG 193
+ TF +++G+++ V K+ PK + PSP+ G
Sbjct: 154 KFDTF-QVSGRIISVSFARRFKKPTPKSPNDLPSPAPG 190
>AT5G19030.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:6357505-6359083 REVERSE
Length = 172
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 109 FVGGLPSTITESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEGVEKVLYKTF 168
FV G +++E K F +FG +T+V ++ + T++ G+G++ F+S+E + +
Sbjct: 80 FVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAV---- 135
Query: 169 HELNGKMVEVKRAVPKELSPSPSR 192
+NGK + + + K P SR
Sbjct: 136 EAMNGKFFDGRFILVKFGQPGLSR 159
>AT3G11400.1 | Symbols: ATEIF3G1, EIF3G1 | EIF3G1 (eukaryotic
translation initiation factor 3G1); RNA binding /
translation initiation factor | chr3:3578542-3580372
FORWARD
Length = 294
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%)
Query: 2 DPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERV 61
D + + +S DT E L + F FG V + D+ TG +RGFGFV F A+R
Sbjct: 211 DENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRA 270
Query: 62 V 62
+
Sbjct: 271 I 271