Miyakogusa Predicted Gene

chr6.LjT02P05.30.nd
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr6.LjT02P05.30.nd - phase: 2 /pseudo/partial
         (594 letters)

Database: TAIR8_pep 
           32,825 sequences; 13,166,001 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G13300.2 | Symbols: VCS | VCS (VARICOSE); nucleotide binding ...   477   e-135
AT3G13300.1 | Symbols: VCS | VCS (VARICOSE); nucleotide binding ...   477   e-135
AT3G13290.1 | Symbols: VCR | VCR (VARICOSE-RELATED); nucleotide ...   440   e-123

>AT3G13300.2 | Symbols: VCS | VCS (VARICOSE); nucleotide binding |
           chr3:4304092-4309956 FORWARD
          Length = 1309

 Score =  477 bits (1228), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 270/588 (45%), Positives = 356/588 (60%), Gaps = 79/588 (13%)

Query: 7   QRVTDMAFFAEDLHLLASASTDGTIFVWRINEGPDEEDKPQITGKVILAIQMLGDSESVH 66
           QRVTDMAFFAED+ +LAS S DG +FVW+I+EG + ED+PQITGK++LA+Q+LG+ ++ H
Sbjct: 203 QRVTDMAFFAEDVDMLASVSLDGKVFVWKISEGSEGEDQPQITGKIVLALQILGEEDTKH 262

Query: 67  PR--------EILIVAIGNRVLKIDTMKAGKGEKFSAEEPLKCNIDKLIDGVHLIGKHDG 118
           PR        EIL+V+IG  VL+IDT K G+GE FSAE PL+C +DKLIDGV ++GKHDG
Sbjct: 263 PRVCWHCHKQEILVVSIGKHVLRIDTTKVGRGEVFSAEAPLQCPLDKLIDGVQIVGKHDG 322

Query: 119 NVTELSMCQWMKSRLASASADGTVKIWEERKATPLAVLRPYDRXTCXFCDILDSSHGPYH 178
            VT+LSMCQWM +RL S+S DGT+KIW++RKA PL VLRP+D         + S   P H
Sbjct: 323 EVTDLSMCQWMTTRLVSSSVDGTIKIWQDRKAQPLVVLRPHDGHPVSSATFVTSPERPDH 382

Query: 179 IILITVGPLNREVKIWVSDNEEGWLLPSDSESWNCIQTLDIKSSSEPNPEDAFFNQVVAL 238
           IILIT GPLNRE+KIWVS  EEGWLLP+D+ESW C QTLD+KSS+EP  E+AFFNQV+AL
Sbjct: 383 IILITGGPLNREMKIWVSAGEEGWLLPADAESWRCTQTLDLKSSTEPRAEEAFFNQVIAL 442

Query: 239 PRAGLFLLANAKKNTIYAVHIEFGTNPTATRLDYIAEFTVTMPILSLTGTSDSLPDGDHI 298
             AGL LLANAK+N +YAVH+++G++P  TR+DY++EFTVTMPILS  GT+D  P  + I
Sbjct: 443 SEAGLLLLANAKRNALYAVHLDYGSSPVGTRMDYLSEFTVTMPILSFIGTND--PPEEPI 500

Query: 299 VQIYCVQTQAIQQYGLTLSQCLPPPLDNVELEKIES--SRDFDALDGST----------- 345
           V++YCVQT AIQQY L L  CLPPP++N+ LEK +S  SR+ + ++G +           
Sbjct: 501 VKVYCVQTLAIQQYTLDLCLCLPPPIENMGLEKSDSSVSREANLVEGMSEPSGLKPTDLP 560

Query: 346 -------------NQEAGNMPQAGNMDGSESAVIRPSESLASPDTSGLPE---------T 383
                          E+ N     + + +  A++ P+     P TSGLP           
Sbjct: 561 SVDSVPKPSIIVNRSESANKLSFPSAEATSQAIVPPN---GEPKTSGLPSQTSGAGSAYA 617

Query: 384 SIPDTETKPNDLSSHNGFDHIHTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHINEQ 443
           ++P     P   S  +G+   HT                               D + E 
Sbjct: 618 TLPQLPLSPRLSSKLSGY---HTP--VEAIEPVIPHHELGGKTPSADYSVDRQMDAVGE- 671

Query: 444 QRNFD-SSTEQIIESGKDNVAEMPASSDNLQNTXXXXXXXXXXXXXXPTVFKHPTHLVTP 502
            RN D SS E+I  S   NV       D++                    FKHPTHLVTP
Sbjct: 672 -RNLDVSSVEEISRSKDSNV----TPDDDVSGMRSPS-----------AFFKHPTHLVTP 715

Query: 503 SEI-----ASKAALSSENSYASDCMNVQDVTSHRDARKYEVEVKVVGE 545
           SEI     +++A++++E+    D  N+QDV  + D R  EVEVK + E
Sbjct: 716 SEILMGVSSAEASITTEDRRDRDA-NIQDV--NNDPRDTEVEVKEISE 760


>AT3G13300.1 | Symbols: VCS | VCS (VARICOSE); nucleotide binding |
           chr3:4304092-4309956 FORWARD
          Length = 1344

 Score =  477 bits (1228), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 270/588 (45%), Positives = 356/588 (60%), Gaps = 79/588 (13%)

Query: 7   QRVTDMAFFAEDLHLLASASTDGTIFVWRINEGPDEEDKPQITGKVILAIQMLGDSESVH 66
           QRVTDMAFFAED+ +LAS S DG +FVW+I+EG + ED+PQITGK++LA+Q+LG+ ++ H
Sbjct: 238 QRVTDMAFFAEDVDMLASVSLDGKVFVWKISEGSEGEDQPQITGKIVLALQILGEEDTKH 297

Query: 67  PR--------EILIVAIGNRVLKIDTMKAGKGEKFSAEEPLKCNIDKLIDGVHLIGKHDG 118
           PR        EIL+V+IG  VL+IDT K G+GE FSAE PL+C +DKLIDGV ++GKHDG
Sbjct: 298 PRVCWHCHKQEILVVSIGKHVLRIDTTKVGRGEVFSAEAPLQCPLDKLIDGVQIVGKHDG 357

Query: 119 NVTELSMCQWMKSRLASASADGTVKIWEERKATPLAVLRPYDRXTCXFCDILDSSHGPYH 178
            VT+LSMCQWM +RL S+S DGT+KIW++RKA PL VLRP+D         + S   P H
Sbjct: 358 EVTDLSMCQWMTTRLVSSSVDGTIKIWQDRKAQPLVVLRPHDGHPVSSATFVTSPERPDH 417

Query: 179 IILITVGPLNREVKIWVSDNEEGWLLPSDSESWNCIQTLDIKSSSEPNPEDAFFNQVVAL 238
           IILIT GPLNRE+KIWVS  EEGWLLP+D+ESW C QTLD+KSS+EP  E+AFFNQV+AL
Sbjct: 418 IILITGGPLNREMKIWVSAGEEGWLLPADAESWRCTQTLDLKSSTEPRAEEAFFNQVIAL 477

Query: 239 PRAGLFLLANAKKNTIYAVHIEFGTNPTATRLDYIAEFTVTMPILSLTGTSDSLPDGDHI 298
             AGL LLANAK+N +YAVH+++G++P  TR+DY++EFTVTMPILS  GT+D  P  + I
Sbjct: 478 SEAGLLLLANAKRNALYAVHLDYGSSPVGTRMDYLSEFTVTMPILSFIGTND--PPEEPI 535

Query: 299 VQIYCVQTQAIQQYGLTLSQCLPPPLDNVELEKIES--SRDFDALDGST----------- 345
           V++YCVQT AIQQY L L  CLPPP++N+ LEK +S  SR+ + ++G +           
Sbjct: 536 VKVYCVQTLAIQQYTLDLCLCLPPPIENMGLEKSDSSVSREANLVEGMSEPSGLKPTDLP 595

Query: 346 -------------NQEAGNMPQAGNMDGSESAVIRPSESLASPDTSGLPE---------T 383
                          E+ N     + + +  A++ P+     P TSGLP           
Sbjct: 596 SVDSVPKPSIIVNRSESANKLSFPSAEATSQAIVPPN---GEPKTSGLPSQTSGAGSAYA 652

Query: 384 SIPDTETKPNDLSSHNGFDHIHTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHINEQ 443
           ++P     P   S  +G+   HT                               D + E 
Sbjct: 653 TLPQLPLSPRLSSKLSGY---HTP--VEAIEPVIPHHELGGKTPSADYSVDRQMDAVGE- 706

Query: 444 QRNFD-SSTEQIIESGKDNVAEMPASSDNLQNTXXXXXXXXXXXXXXPTVFKHPTHLVTP 502
            RN D SS E+I  S   NV       D++                    FKHPTHLVTP
Sbjct: 707 -RNLDVSSVEEISRSKDSNV----TPDDDVSGMRSPS-----------AFFKHPTHLVTP 750

Query: 503 SEI-----ASKAALSSENSYASDCMNVQDVTSHRDARKYEVEVKVVGE 545
           SEI     +++A++++E+    D  N+QDV  + D R  EVEVK + E
Sbjct: 751 SEILMGVSSAEASITTEDRRDRDA-NIQDV--NNDPRDTEVEVKEISE 795


>AT3G13290.1 | Symbols: VCR | VCR (VARICOSE-RELATED); nucleotide
           binding | chr3:4297536-4303120 FORWARD
          Length = 1322

 Score =  440 bits (1132), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 226/423 (53%), Positives = 294/423 (69%), Gaps = 38/423 (8%)

Query: 7   QRVTDMAFFAEDLHLLASASTDGTIFVWRINEGPDEEDKPQITGKVILAIQMLGDSESVH 66
           QRVTDMAFFAED+HLLAS S DG +FVW+I+EG + +++ QITGK+++A+Q+LG+ ++ H
Sbjct: 222 QRVTDMAFFAEDVHLLASVSLDGKVFVWKISEGSEGDEQSQITGKIVVALQILGEEDTKH 281

Query: 67  PR--------EILIVAIGNRVLKIDTMKAGKGEKFSAEEPLKCNIDKLIDGVHLIGKHDG 118
           PR        EIL+V+IG  VL+IDT K G+GE FSAE PL+C++DKLIDGV ++GKHDG
Sbjct: 282 PRVCWHCHKQEILVVSIGKHVLRIDTTKVGRGEVFSAEAPLQCHLDKLIDGVQIVGKHDG 341

Query: 119 NVTELSMCQWMKSRLASASADGTVKIWEERKATPLAVLRPYDRXTCXFCDILDSSHGPYH 178
            VT+LSMCQWM +RL S+S DGTVKIW++RK  PL VLRP+D         + S   P H
Sbjct: 342 EVTDLSMCQWMTTRLVSSSVDGTVKIWQDRKTQPLVVLRPHDGLPVNSAIFVTSPERPDH 401

Query: 179 IILITVGPLNREVKIWVSDNEEGWLLPSDSESWNCIQTLDIKSSSEPNPEDAFFNQVVAL 238
           IILIT GPLNRE+KIWVS  EEGWLLP+D+ESW C QTLD+KSS+EP  E AFFNQV+AL
Sbjct: 402 IILITGGPLNREIKIWVSAGEEGWLLPADTESWRCTQTLDLKSSTEPQAEKAFFNQVIAL 461

Query: 239 PRAGLFLLANAKKNTIYAVHIEFGTNPTATRLDYIAEFTVTMPILSLTGTSDSLPDGDHI 298
             AGL LLANA++N IY+VH+++G++P  T +DY++EFTVTMPILS  GT+D  P+ +  
Sbjct: 462 SEAGLLLLANARRNAIYSVHLDYGSSPVETLMDYLSEFTVTMPILSFIGTNDH-PE-EPF 519

Query: 299 VQIYCVQTQAIQQYGLTLSQCLPPPLDNVELEKIESSRDFDA-LDGSTNQEAG----NMP 353
           V++YCVQT AIQQY L L  C+PPP +NV  EK +S+   +A L  ST + +G     +P
Sbjct: 520 VKVYCVQTLAIQQYTLDLFLCMPPPRENVGFEKSDSTVSREANLVESTLETSGMKPTELP 579

Query: 354 QAGNM-------------------DGSESAVIRPSESL---ASPDTSGLP-ETSIPDTET 390
             G++                    G  SA I P   +     P TSG+P ETS  D+  
Sbjct: 580 SVGSVPKPSILVNRSENANMLSFPAGPASAGITPPAIVPPNGEPKTSGMPSETSDVDSAY 639

Query: 391 KPN 393
            P+
Sbjct: 640 APS 642



 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 40/58 (68%), Gaps = 8/58 (13%)

Query: 493 FKHPTHLVTPSEI-----ASKAALSSENSYASDCMNVQDVTSHRDARKYEVEVKVVGE 545
           FK PTHLVTPSEI     +++A++++E+    D  N+++V  + DAR  EVE+K VGE
Sbjct: 729 FKQPTHLVTPSEILMGVSSTEASITTEDKRDRDA-NIEEV--NNDARGLEVELKEVGE 783