Miyakogusa Predicted Gene

chr6.CM0055.30.nd
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr6.CM0055.30.nd - phase: 0 
         (270 letters)

Database: TAIR8_pep 
           32,825 sequences; 13,166,001 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G64420.1 | Symbols:  | DNA polymerase V family | chr5:2577364...   235   3e-62

>AT5G64420.1 | Symbols:  | DNA polymerase V family |
           chr5:25773642-25778348 FORWARD
          Length = 1306

 Score =  235 bits (599), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 134/249 (53%), Positives = 167/249 (67%), Gaps = 16/249 (6%)

Query: 36  SSTKPMESKKKRKALDKERRRATA-------GEVVPEPKPVA-------AADSPSTSGGS 81
           SS K ME KK RKA DK+RR   A       G   P+P PVA       A D    S  +
Sbjct: 58  SSGKDMEKKKMRKASDKQRRLEAALKKNNGVGASRPKPIPVAVNSNSDEADDESLPSAAA 117

Query: 82  AAPEFHIGVFKDLAVANETMREAAAKQMVRELKEVQNAYDGLGESEKEEGDGGFKLEAEK 141
           ++    +  F DLA ++ ++REAAA+ +V  L+E+Q  Y+ L   +KE  DGG  LEAEK
Sbjct: 118 SSSSLPLNYFTDLASSDASVREAAAESLVLRLQEIQKQYEML--PDKESVDGGLMLEAEK 175

Query: 142 DDGLENCAASVRYAVRRLIRGVSSSRECARPGFALGLAALVGSIHNIRVESFLKLVVDLL 201
           +DGL+NCA  +RYA+RRLIRGVSSSRECAR GFALGL   V  I +I VES L L+ D L
Sbjct: 176 NDGLDNCAPHLRYALRRLIRGVSSSRECARQGFALGLTLPVSVISSINVESLLNLIADSL 235

Query: 202 EVTSSMKGQEAKDSLLGRLFAYGALARSGRLEHEYSSDKNTSSIKEFISALISLANRKRY 261
            V+SSM GQ+ K+ LLGRLFAYGALARSGRL  ++ SDK++  IKEF +ALI LA +KRY
Sbjct: 236 SVSSSMTGQDIKECLLGRLFAYGALARSGRLIEDWQSDKDSPIIKEFTNALIGLAAKKRY 295

Query: 262 LQDPAVSII 270
           LQ+PAV I+
Sbjct: 296 LQEPAVHIL 304