Miyakogusa Predicted Gene

chr5.LjT39E05.30.nd
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr5.LjT39E05.30.nd + phase: 0 
         (323 letters)

Database: TAIR8_pep 
           32,825 sequences; 13,166,001 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G05010.2 | Symbols:  | clathrin adaptor complexes medium subu...   380   e-106
AT5G05010.1 | Symbols:  | clathrin adaptor complexes medium subu...   380   e-106

>AT5G05010.2 | Symbols:  | clathrin adaptor complexes medium
           subunit-related | chr5:1477138-1479873 FORWARD
          Length = 527

 Score =  380 bits (975), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 197/270 (72%), Positives = 220/270 (81%), Gaps = 4/270 (1%)

Query: 31  LAASIVSKSGKVLVSRHFVDMTRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIEA 90
           LAA+IV KSGKV+VSRH+VDM+RIRIEGLLAAFPKLVG GKQHTY+ETENVRYVYQPIEA
Sbjct: 4   LAAAIVVKSGKVIVSRHYVDMSRIRIEGLLAAFPKLVGMGKQHTYIETENVRYVYQPIEA 63

Query: 91  LYLLLVTNKQSNILEDLDTLRLLSKLVPEYSYSLDEEGICKHAFELIFAFDEVISLGHKE 150
           L+LLLVT KQSNILEDL TL LLSKLVPEYS SLDEEGI + +FELIFAFDEVISLGHKE
Sbjct: 64  LFLLLVTTKQSNILEDLATLTLLSKLVPEYSMSLDEEGISRASFELIFAFDEVISLGHKE 123

Query: 151 SVTVAQVKQYCEMESHEEKLHKLVMQSKINETKDVMKRKASEIDKSKIEKNRGDKVGFGP 210
           SVTVAQVKQYCEMESHEEKLHKLVMQSKIN+TKDVMKRKA+EIDKSKIEKN+    GF  
Sbjct: 124 SVTVAQVKQYCEMESHEEKLHKLVMQSKINDTKDVMKRKANEIDKSKIEKNKPG--GFSS 181

Query: 211 LQSMGSGRIENSFSD-XXXXXXXXXXXXXXXXXXXPDLDSFSTKSKARPTSSATAPPKGL 269
           + SMGSGR+E+ F++                     D+D  +TK K R  SS TAPPK  
Sbjct: 182 MGSMGSGRLESGFNELSISSGGGGGYGSGSGFGMISDVDPINTKPKDRSRSSVTAPPKSS 241

Query: 270 GMKLGKSQRTNQFLESLKAEGEVIVEDVQP 299
           GMKLGKS + NQ +ESLKAEGE ++EDV+P
Sbjct: 242 GMKLGKSGK-NQLMESLKAEGEDVIEDVKP 270


>AT5G05010.1 | Symbols:  | clathrin adaptor complexes medium
           subunit-related | chr5:1477138-1479873 FORWARD
          Length = 527

 Score =  380 bits (975), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 197/270 (72%), Positives = 220/270 (81%), Gaps = 4/270 (1%)

Query: 31  LAASIVSKSGKVLVSRHFVDMTRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQPIEA 90
           LAA+IV KSGKV+VSRH+VDM+RIRIEGLLAAFPKLVG GKQHTY+ETENVRYVYQPIEA
Sbjct: 4   LAAAIVVKSGKVIVSRHYVDMSRIRIEGLLAAFPKLVGMGKQHTYIETENVRYVYQPIEA 63

Query: 91  LYLLLVTNKQSNILEDLDTLRLLSKLVPEYSYSLDEEGICKHAFELIFAFDEVISLGHKE 150
           L+LLLVT KQSNILEDL TL LLSKLVPEYS SLDEEGI + +FELIFAFDEVISLGHKE
Sbjct: 64  LFLLLVTTKQSNILEDLATLTLLSKLVPEYSMSLDEEGISRASFELIFAFDEVISLGHKE 123

Query: 151 SVTVAQVKQYCEMESHEEKLHKLVMQSKINETKDVMKRKASEIDKSKIEKNRGDKVGFGP 210
           SVTVAQVKQYCEMESHEEKLHKLVMQSKIN+TKDVMKRKA+EIDKSKIEKN+    GF  
Sbjct: 124 SVTVAQVKQYCEMESHEEKLHKLVMQSKINDTKDVMKRKANEIDKSKIEKNKPG--GFSS 181

Query: 211 LQSMGSGRIENSFSD-XXXXXXXXXXXXXXXXXXXPDLDSFSTKSKARPTSSATAPPKGL 269
           + SMGSGR+E+ F++                     D+D  +TK K R  SS TAPPK  
Sbjct: 182 MGSMGSGRLESGFNELSISSGGGGGYGSGSGFGMISDVDPINTKPKDRSRSSVTAPPKSS 241

Query: 270 GMKLGKSQRTNQFLESLKAEGEVIVEDVQP 299
           GMKLGKS + NQ +ESLKAEGE ++EDV+P
Sbjct: 242 GMKLGKSGK-NQLMESLKAEGEDVIEDVKP 270