Miyakogusa Predicted Gene
- chr5.CM0911.360.nd
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr5.CM0911.360.nd - phase: 0
(1598 letters)
Database: TAIR8_pep
32,825 sequences; 13,166,001 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G27430.1 | Symbols: | GYF domain-containing protein | chr1:9... 375 e-103
AT1G24300.1 | Symbols: | GYF domain-containing protein | chr1:8... 204 3e-52
AT5G42950.1 | Symbols: | GYF domain-containing protein | chr5:1... 103 1e-21
>AT1G27430.1 | Symbols: | GYF domain-containing protein |
chr1:9521032-9526915 REVERSE
Length = 1531
Score = 375 bits (962), Expect = e-103, Method: Compositional matrix adjust.
Identities = 282/793 (35%), Positives = 400/793 (50%), Gaps = 143/793 (18%)
Query: 1 MGDGKMNLPDDLFSSKPSDFHSSLLKDEAFGGHGGEKGIAALLXXXXXXXXXXXXIPLSP 60
M +GK +LPDDL SK SD L D + IPLSP
Sbjct: 1 MAEGKFDLPDDLIFSKSSDQLKELASDNS--------------------------IPLSP 34
Query: 61 QWLYSK----PVDVKT-TANPVGVNSTDPILKDSWRLEGSQDKKDWRRAAPDVDISXXXX 115
QWLY+K +DV++ T P+G N +DP KD+WRL+ +DKKDW++ + + S
Sbjct: 35 QWLYTKSSEYKMDVRSPTPVPMG-NPSDPNPKDAWRLDAPEDKKDWKKIVHENETSRRWR 93
Query: 116 XXXXXTSLLGXXXXXXXXXXXXXTSTSENRS------LPADRWHD--SRGSVHDSRRENK 167
T LLG S S + +DRW+D SR +VH+ RR+NK
Sbjct: 94 EEERETGLLGARKVDRRKTERRIDSVSSRETGDIKNAAASDRWNDVNSRAAVHEPRRDNK 153
Query: 168 WSSRWGPDDKEKDSRSEKRN-DVGKEDGHTEKQSSVASNRTGADRDTDSRDKWRPRHRVE 226
WSSRWGPDDKEK++R EK + + KE+ +E QS V++ R ++RD+D+RDKWRPRHR+E
Sbjct: 154 WSSRWGPDDKEKEARCEKVDINKDKEEPQSESQSVVSNVRATSERDSDTRDKWRPRHRME 213
Query: 227 AQTAGVATYRAAPGFGLEKGRIEGSNVRFSPGRGRANFNENLQIGRPPLGSSAGSSLVDK 286
+Q+ G ++YRAAPGFGL++GR EG N+ F+ GRGRA+ IGR GSS
Sbjct: 214 SQSGGPSSYRAAPGFGLDRGRAEGPNLGFTVGRGRAS-----TIGR---GSST------- 258
Query: 287 NKTILGKSSLGADSYYYPRGKILDIYRKQKVDPTFESMPSEMEHTSPITQLSSVEPLAFV 346
+++G S + + YPRGK+LD+YRKQK D + + +EM+ + ITQ++ +EPLAF+
Sbjct: 259 --SLIGAGSALSPVFRYPRGKLLDMYRKQKPDSSLGRILTEMDEVASITQVALIEPLAFI 316
Query: 347 APAVEEEGVLKDIWKGKITSSEV---SGYSVRGKDGGLNEDISGLGVTLSEGKQLTIGSG 403
AP EEE L IWKG+I SSEV SG G + L I G T +G L +G
Sbjct: 317 APDAEEEANLNGIWKGRIISSEVYTSSGEESLGGNSLLKCRIPESGETKVDGALLGFMNG 376
Query: 404 EKVISRMNIQNESEQIFIGSASTADGSSKNVVKEVATSQEIKQKHMPSLGVYEKDEISGN 463
+ +GS KN + S H LG
Sbjct: 377 D-----------------------NGSMKNNDSGLLGS------HNGGLGA--------- 398
Query: 464 NTREGSIPRIKVAESETFDYHQGQLSAFKEHATQDGVESIGASAISSNLPDDARSLFDFS 523
S+PR+ SE+ Y G H + + V S+ S++ D + S+
Sbjct: 399 ---ASSVPRLNSVASES--YGSGGAGYQLSHGSPEAVRSV---FTKSSVLDGSESVVGSF 450
Query: 524 SLQQNASVNPQDLKLNEKMYAL--EELSLCYLDPQGMVQGPFLGIDIIMWFEQGFFGLDL 581
+ D +++ A+ EE Y+DPQG++QGPF+G DII WFEQGFFG DL
Sbjct: 451 EQAYTGKLQQPDTEVDHSEGAMPPEEFLFLYIDPQGVIQGPFIGSDIISWFEQGFFGTDL 510
Query: 582 PVRLFEAPEGSPFHELGDVMPHLKVKTGLDSGSNLVNQSEPSDANERNLKVDVHTFDYGS 641
VRL APEG+PF +LG VM ++K ++ +++ +Q S+ E +LK + GS
Sbjct: 511 QVRLASAPEGTPFQDLGRVMSYIKAES---VHAHISDQK--SELEETSLKANSEA--GGS 563
Query: 642 DDQPWSSSRPDTTSNVGISSQMS-----------NQSYHSEIK----FSDEQRFNNIVAQ 686
S+ D++S GIS S + SE+ +++Q F + AQ
Sbjct: 564 VAHVAESN--DSSSLTGISRSFSVYNNPSGQDNFQRKSESEVYGRPPHAEDQSFLDFSAQ 621
Query: 687 DEDATF------SNLAGSSNDNPLMRPVGANASYSHPTGRPIANEITGSDTQNSEADKLH 740
DE+ F S A S + M A +S + P+ E+T + T+N +KLH
Sbjct: 622 DEEIVFPGRARVSGYASSVKSSTSMH--DALMEFSGHSDIPV--EVTTAATRNQNENKLH 677
Query: 741 PFGLLMSELRDGS 753
PFG+L SEL GS
Sbjct: 678 PFGVLWSELEGGS 690
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 96/353 (27%), Positives = 156/353 (44%), Gaps = 57/353 (16%)
Query: 956 DANFGQSKHDLSRENLLDQVQL-RRYLHDMQQNS-HSLRNLDPSMEQIIQANMGLNAVQG 1013
D FGQS HD R N +DQ+ L ++ L+++Q++S H +N P +EQ N G +G
Sbjct: 851 DTRFGQS-HDFPRSNSVDQMLLEQQMLNELQKSSGHPSQNFAPYIEQHAAGNFGRFTHEG 909
Query: 1014 RQADLSDLL------------------LQARHGNIL--PSEXXXXXXXXXXXXXXXXXXX 1053
Q +L + L +Q++HG + P
Sbjct: 910 HQRELLEQLFSTQMQSQYGQKQSQYGQMQSQHGQLQSEPIRSLEYQLLQQEQLMQLANGV 969
Query: 1054 XXXXGMDGERHFGRSWPINETGQLVR-NPSSHQLGHSAGFNVSDIHKQQQRLVAQEEQLN 1112
++ +RH WP + + QL+R +P H+ SAGF D H+QQQR E+Q +
Sbjct: 970 RHNTLLEEQRHIDPLWPSDHSDQLLRTHPGIHRSHSSAGFRPLDFHQQQQR-PHFEDQFS 1028
Query: 1113 YLGRNHLEQNQ-RGFYDPSSMMFERSSPGS----------VQGRELLERRRYMHPAEQLG 1161
L RN Q Q R + FERS+ G QG EL + +M + +LG
Sbjct: 1029 QLERNRSYQQQLRLELLEHGLPFERSASGLNLDAVNGLGLSQGLELRDATAHMQSSGRLG 1088
Query: 1162 ---PVSSHH---LQSSDDLFGH-----HSLSGNNGHVENNWIDPRVQ------QHLEAVR 1204
P SH + + F H SG + + +W + + + +H +
Sbjct: 1089 NSTPGFSHQNPRIPLGESHFSHLEPTEGRWSGADTQLAGDWAESQFRRSNMDTEHDKMRS 1148
Query: 1205 QRRDLGDTIASADLNIPSAGAHEESSARGFMDLLHQKLGLQSSQSSNVDKWHP 1257
+ R LG+ S + G+ ++ S + FM+LLHQ+ G QS++S N+++ +P
Sbjct: 1149 EIRRLGEDPNSWMV----GGSTDDKSKQLFMELLHQRPGHQSAESPNMNRGYP 1197
>AT1G24300.1 | Symbols: | GYF domain-containing protein |
chr1:8614504-8620409 REVERSE
Length = 1417
Score = 204 bits (520), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 130/322 (40%), Positives = 176/322 (54%), Gaps = 58/322 (18%)
Query: 1 MGDGKMNLPDDLFSSKPSDFHSSLLKDEAFGGHGGEKGIAALLXXXXXXXXXXXXIPLSP 60
M +GK +LPDDL SK SD L D + IPLSP
Sbjct: 1 MAEGKFDLPDDLILSKSSDQLKELASDNS--------------------------IPLSP 34
Query: 61 QWLYSK----PVDVKT-TANPVGVNSTDPILKDSWRLEGSQDKKDWRRAAPDVDISXXXX 115
QWLY+K +DV++ T P+G N +DP LKD+WRL+ +DKKDW++ + + +
Sbjct: 35 QWLYTKSSESKMDVRSPTPMPMG-NPSDPNLKDAWRLDAPEDKKDWKKIVSENETNRRWR 93
Query: 116 XXXXXTSLLGXXXXXXXXXXX-----XXTSTSENRSLPA-DRWHD--SRGSVHDSRRENK 167
T LLG T E ++ A DRW+D SR +VH+ RR+NK
Sbjct: 94 EEERETGLLGARKVDRRKTERRIDNVSSRETGEVKTTAASDRWNDVNSRAAVHEPRRDNK 153
Query: 168 WSSRWGPDDKEKDSRSEKRN-DVGKEDGHTEKQSSVASNRTGADRDTDSRDKWRPRHRVE 226
WSSRWGPDDKEK++R EK + KE+ +E QS V++ R ++RD+D RDKWRPRHR+E
Sbjct: 154 WSSRWGPDDKEKEARCEKVEINKDKEEPQSESQSVVSNVRATSERDSDPRDKWRPRHRME 213
Query: 227 AQTAGVATYRAAPGFGLEKGRIEGSNVRFSPGRGRANFNENLQIGRPPLGSSAGSSLVDK 286
+Q+ +YR APGFGL++GR EG N+ F+ GRGRA+ IGR GSS
Sbjct: 214 SQSGVPTSYRTAPGFGLDRGRAEGPNLGFTVGRGRAS-----TIGR---GSST------- 258
Query: 287 NKTILGKSSLGADSYYYPRGKI 308
+++G S A + YPR K
Sbjct: 259 --SLIGAGSASAPVFRYPRVKC 278
Score = 125 bits (313), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 124/408 (30%), Positives = 183/408 (44%), Gaps = 65/408 (15%)
Query: 375 RGKDGGLNEDISGLGVTLSEGKQLTIGSGEKVISRMNIQNESEQIFIGSASTADGSSKNV 434
RG+ G N LG T+ G+ TIG G + + I GSAS V
Sbjct: 232 RGRAEGPN-----LGFTVGRGRASTIGRG----------SSTSLIGAGSASAPVFRYPRV 276
Query: 435 VKEVATSQEIKQKHMPSLGVYEKDEISGNNTREG-------------SIPRIKVAESETF 481
+ S E K LG D S N G S+PR+ SE++
Sbjct: 277 KCRIPESGETKVDGA-LLGFMNGDNGSMKNNDSGLLGSHNGGLGAASSVPRLNSVASESY 335
Query: 482 DYHQGQLSAFKE--HATQDGVESIGASAISSNLPDDARSLFDFSSLQQNASVNPQDLKLN 539
G A + H + + V S+ S + D + S+ + D++++
Sbjct: 336 ----GSFGAGYQVSHGSPEAVRSV---FTKSPVLDGSESVVGSFEQDYMGKLQQPDVEVD 388
Query: 540 EKMYAL--EELSLCYLDPQGMVQGPFLGIDIIMWFEQGFFGLDLPVRLFEAPEGSPFHEL 597
+ A+ E+ Y+DPQG++QGPF+G DII WFEQGFFG DL VRL APEG+PF +L
Sbjct: 389 QSEAAMPPEDFLFLYIDPQGVIQGPFIGSDIISWFEQGFFGTDLQVRLANAPEGTPFQDL 448
Query: 598 GDVMPHLKVKTGLDSGSNLVNQSEPSDANERNLKVDVHTFDYGSDDQPWSSSRPDTTSNV 657
G VM +LK ++ + +++ NQ S+ E LK + D G P + S D++S
Sbjct: 449 GRVMSYLKTES---AHAHISNQE--SELEETRLKANS---DTGLSIAPVAESN-DSSSMN 499
Query: 658 GISSQMS---------NQSYHSEIKF------SDEQRFNNIVAQDEDATFSNLAGSSNDN 702
G S S N SE +F ++++ F + QDE+ F AG S
Sbjct: 500 GTSRSFSVYNNPSAQDNFQRKSESEFYATPPHTEDRSFLDFSTQDEEIVFPGRAGVSGYA 559
Query: 703 PLMRPVGANASYSHPTGR-PIANEITGSDTQNSEADKLHPFGLLMSEL 749
+ + ++ +G+ I E T + TQ +KLHPFG+L SEL
Sbjct: 560 SVKSSTSMHDAFMEVSGQSAIPVESTKAATQKQHENKLHPFGVLWSEL 607
Score = 70.5 bits (171), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 94/347 (27%), Positives = 151/347 (43%), Gaps = 56/347 (16%)
Query: 956 DANFGQSKHDLSRENLLDQVQLR-RYLHDMQQNS-HSLRNLDPSMEQIIQANMGLNAVQG 1013
D+ FGQS HD R N +DQ+ L + ++++Q++S H +N P +EQ+ N G +G
Sbjct: 782 DSRFGQS-HDFPRSNNVDQMLLEHQLMNELQKSSGHPSQNFAPYIEQLAAGNFGQLPHEG 840
Query: 1014 RQADLSDLLL----QARHGNIL---------PSEXXXXXXXXXXXXXXXXXXXXXXXGMD 1060
Q +L + LL Q+++G + P+ ++
Sbjct: 841 HQRELLEQLLSTKMQSQYGPMQSPYGQLQSEPTRSLEYQLLQQEQLMQLANGVRHNTLLE 900
Query: 1061 GERHFGRSWPINETGQLVRN-PSSHQLGHSAGFNVSDIHKQQQRLVAQEEQLNYLGRNHL 1119
+RH WP + QL+R+ P + S GF D H+QQQR E+Q L RN L
Sbjct: 901 EQRHIDPLWPSDHNDQLLRSHPGIQRSRSSTGFRQLDFHQQQQR-PPFEDQFGQLERNLL 959
Query: 1120 EQNQ-RGFYDPSSMMFERSS--PGSV--------------QGRELLERRRYMHPAEQ-LG 1161
Q Q R + FERS+ P SV QG EL + +M LG
Sbjct: 960 YQQQLRQELFEQGLPFERSASLPVSVSGMNLDPVNGLGLSQGLELRDATTHMQIGNSTLG 1019
Query: 1162 --------PVSSHHLQSSDDLFGHHSLSGNNGHVENNWIDPRVQ------QHLEAVRQRR 1207
P+ H + + G SG + V +W + ++ +H + + R
Sbjct: 1020 FNHQNPRIPIGEPHFSQLESMEGR--WSGADTQVVGDWAESQLHRSNIDAEHHKMRSESR 1077
Query: 1208 DLGDTIASADLNIPSAGAHEESSARGFMDLLHQKLGLQSSQSSNVDK 1254
+G+ S L G E+ S + FM+LLHQ+ G QS++S ++++
Sbjct: 1078 RMGEDSNSWML----GGTTEDRSKQLFMELLHQRPGHQSAESPSMNR 1120
>AT5G42950.1 | Symbols: | GYF domain-containing protein |
chr5:17241664-17248272 FORWARD
Length = 1714
Score = 103 bits (256), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/80 (61%), Positives = 56/80 (70%)
Query: 546 EELSLCYLDPQGMVQGPFLGIDIIMWFEQGFFGLDLPVRLFEAPEGSPFHELGDVMPHLK 605
EELSL Y DPQG++QGPF G DII WFE G+FG+DL VRL AP SPF LGDVMPHL+
Sbjct: 545 EELSLYYKDPQGLIQGPFSGSDIIGWFEAGYFGIDLLVRLASAPNDSPFSLLGDVMPHLR 604
Query: 606 VKTGLDSGSNLVNQSEPSDA 625
K+G G Q+E DA
Sbjct: 605 AKSGPPPGFTGAKQNEFVDA 624
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 108/353 (30%), Positives = 150/353 (42%), Gaps = 44/353 (12%)
Query: 56 IPLSPQWLYSKPVDVKT---TANPVGVNSTDPILKDSWRLEGSQD---KKD-WRRAAPDV 108
IPLSPQWL SKP + KT T +P + +++ + E + D KKD +R + D
Sbjct: 36 IPLSPQWLLSKPGENKTGMGTGDPNQYGNHSDVVRTTGNGEETLDNLKKKDVFRPSLLDA 95
Query: 109 DISXXXXXXXXXTSLLGXXXXXXXXXXXXXTSTS--------------ENRSLPADRWHD 154
+ L + + E R P DRW D
Sbjct: 96 ESGRRDRWRDEERDTLSSVRNDRWRNGDKDSGDNKKVDRWDNVAPKFGEQRRGPNDRWTD 155
Query: 155 S--RGSVHDSRRENKWSSRWGPDDKEKDSRSEKRNDVGKEDGHT--EKQSSVASNRTGAD 210
S + + + RRE+KW+SRWGPDDKE + K ++ GK DG EK S+ ++
Sbjct: 156 SGNKDAAPEQRRESKWNSRWGPDDKEAEIPRNKWDEPGK-DGEIIREKGPSLPTS----- 209
Query: 211 RDTDSRDKWRP---RHRVEAQTAGVATYRAAPGFGLEKGRIEGSNVRFSPGRGRANFNEN 267
D D WRP R R EA + F +GR E + + FS GRGR + +
Sbjct: 210 -DGDHYRPWRPSQGRGRGEALHNQSTPNKQVTSFSHSRGRGENTAI-FSAGRGRMSPGGS 267
Query: 268 LQIGRPPLGSSAGSSLVDKNKTILGKSSLGADSYY-YPRGKILDIYRKQKVDPTFESMPS 326
+ P GS+ DK G+S G + Y R K+LD+YR + +E P
Sbjct: 268 IFTSAPNQSHPPGSA-SDK-----GESGPGEPPHLRYSRMKLLDVYRMADTE-CYEKFPD 320
Query: 327 EMEHTSPITQLSSVEPLAFVAPAVEEEGVLKDIWKGKITSSEVSGYSVRGKDG 379
+T +PLA AP+ +E VL I KGKI SS S G G
Sbjct: 321 GFIEVPSLTSEEPTDPLALCAPSSDEVNVLDAIEKGKIVSSGAPQTSKDGPTG 373