Miyakogusa Predicted Gene
- chr5.CM0909.350.nc
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr5.CM0909.350.nc + phase: 0
(147 letters)
Database: TAIR8_pep
32,825 sequences; 13,166,001 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G25140.1 | Symbols: OLEO1 | OLEO1 (OLEOSIN1) | chr4:12900508-... 113 4e-26
AT5G51210.1 | Symbols: OLEO3 | OLEO3 (OLEOSIN3) | chr5:20837397-... 108 9e-25
AT2G25890.1 | Symbols: | glycine-rich protein / oleosin | chr2:... 88 2e-18
AT3G01570.1 | Symbols: | glycine-rich protein / oleosin | chr3:... 71 3e-13
AT5G07550.1 | Symbols: ATGRP19, GRP19 | GRP19 (Glycine rich prot... 62 1e-10
AT5G07550.2 | Symbols: ATGRP19, GRP19 | GRP19 (Glycine rich prot... 59 1e-09
AT5G07560.1 | Symbols: ATGRP20, GRP20 | GRP20 (Glycine rich prot... 58 2e-09
AT5G07540.2 | Symbols: ATGRP16, ATGRP-6, GRP16 | GRP16 (Glycine ... 55 2e-08
AT5G07540.1 | Symbols: ATGRP16, ATGRP-6, GRP16 | GRP16 (Glycine ... 55 2e-08
AT5G07600.1 | Symbols: | oleosin / glycine-rich protein | chr5:... 53 8e-08
AT5G07510.3 | Symbols: ATGRP14, GRP-4, ATGRP-4, GRP14 | GRP14 (G... 52 9e-08
AT5G07510.1 | Symbols: ATGRP14, GRP-4, ATGRP-4, GRP14 | GRP14 (G... 52 1e-07
AT5G07510.2 | Symbols: ATGRP14, GRP-4, ATGRP-4, GRP14 | GRP14 (G... 52 1e-07
AT5G61610.1 | Symbols: | glycine-rich protein / oleosin | chr5:... 52 1e-07
AT5G07550.3 | Symbols: ATGRP19, GRP19 | GRP19 (Glycine rich prot... 50 4e-07
AT5G07520.1 | Symbols: ATGRP18, ATGRP-8, GRP18 | GRP18 (Glycine ... 50 5e-07
AT3G18570.1 | Symbols: | glycine-rich protein / oleosin | chr3:... 50 5e-07
AT5G07530.2 | Symbols: ATGRP17, ATGRP-7, GRP17 | GRP17 (Glycine ... 49 2e-06
AT3G27660.1 | Symbols: OLEO4 | OLEO4 (OLEOSIN4) | chr3:10245088-... 47 4e-06
AT5G07530.1 | Symbols: ATGRP17, ATGRP-7, GRP17 | GRP17 (Glycine ... 47 4e-06
AT5G40420.1 | Symbols: PA23, OLEO2 | OLEO2 (OLEOSIN 2) | chr5:16... 47 4e-06
AT1G48990.1 | Symbols: | glycine-rich protein / oleosin | chr1:... 47 5e-06
AT5G07571.1 | Symbols: | similar to GRP20 (Glycine rich protein... 42 1e-04
>AT4G25140.1 | Symbols: OLEO1 | OLEO1 (OLEOSIN1) |
chr4:12900508-12901269 FORWARD
Length = 173
Score = 113 bits (283), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 66/115 (57%), Positives = 82/115 (71%), Gaps = 4/115 (3%)
Query: 32 KAATAVTAGGSLLILAGLMLAGTVIALTIATPLFVIFSPVLVPAVIAVSXXXXXXXXXXX 91
KAATAVTAGGSLL+L+ L L GTVIALT+ATPL VIFSP+LVPA+I V+
Sbjct: 45 KAATAVTAGGSLLVLSSLTLVGTVIALTVATPLLVIFSPILVPALITVALLITGFLSSGG 104
Query: 92 XXXXXITVLAWIYRYVTGKHPPGADQLDTARHKLMNKAREIKD----YGQQQISG 142
ITV +WIY+Y TG+HP G+D+LD+AR KL +KA+++KD YGQQ G
Sbjct: 105 FGIAAITVFSWIYKYATGEHPQGSDKLDSARMKLGSKAQDLKDRAQYYGQQHTGG 159
>AT5G51210.1 | Symbols: OLEO3 | OLEO3 (OLEOSIN3) |
chr5:20837397-20837932 FORWARD
Length = 141
Score = 108 bits (271), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 77/111 (69%), Gaps = 4/111 (3%)
Query: 30 FIKAATAVTAGGSLLILAGLMLAGTVIALTIATPLFVIFSPVLVPAVIAVSXXXXXXXXX 89
+KAATAVTAGGSLL+L+GL LAGTVIALT+ATPL VIFSPVLVPAV+ V+
Sbjct: 27 MVKAATAVTAGGSLLVLSGLTLAGTVIALTVATPLLVIFSPVLVPAVVTVALIITGFLAS 86
Query: 90 XXXXXXXITVLAWIYRYVTGKHPPGADQLDTARHKLMNKAREIKDYGQQQI 140
IT +W+YR++TG G+D+++ AR K+ ++ ++ K YGQ I
Sbjct: 87 GGFGIAAITAFSWLYRHMTGS---GSDKIENARMKVGSRVQDTK-YGQHNI 133
>AT2G25890.1 | Symbols: | glycine-rich protein / oleosin |
chr2:11044513-11044962 FORWARD
Length = 149
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/87 (49%), Positives = 53/87 (60%)
Query: 53 GTVIALTIATPLFVIFSPVLVPAVIAVSXXXXXXXXXXXXXXXXITVLAWIYRYVTGKHP 112
GTVI L +ATPL V+FSPVLVPAVI + T L WIY+YVTGKHP
Sbjct: 51 GTVIGLIVATPLMVLFSPVLVPAVITIGLLTMGFLFSGGCGVAAATALTWIYKYVTGKHP 110
Query: 113 PGADQLDTARHKLMNKAREIKDYGQQQ 139
GAD++D AR ++ KA+E+ Y Q
Sbjct: 111 MGADKVDYARMRIAEKAKELGHYTHSQ 137
>AT3G01570.1 | Symbols: | glycine-rich protein / oleosin |
chr3:222159-222785 REVERSE
Length = 183
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 61/108 (56%), Gaps = 8/108 (7%)
Query: 36 AVTAGGSLLILAGLMLAGTVIALTIATPLFVIFSPVLVPAVIAVSXXXXXXXXXXXXXXX 95
V GG+LL +AGL LAG+VI L +A PLF+IFSPV+VPA +
Sbjct: 43 GVPIGGTLLTIAGLTLAGSVIGLMLAFPLFLIFSPVIVPAAFVIGLAMTGFLASGAIGLT 102
Query: 96 XITVLAWIYRYV--TGKHPPGADQLDTARHKLMNKA----REIKDYGQ 137
++ ++W+ Y+ G+H P ++L+ A+H+L + A + KD GQ
Sbjct: 103 GLSSMSWVLNYIRRAGQHIP--EELEEAKHRLADMAEYVGQRTKDAGQ 148
>AT5G07550.1 | Symbols: ATGRP19, GRP19 | GRP19 (Glycine rich protein
19) | chr5:2388575-2389185 REVERSE
Length = 106
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 43/72 (59%)
Query: 42 SLLILAGLMLAGTVIALTIATPLFVIFSPVLVPAVIAVSXXXXXXXXXXXXXXXXITVLA 101
+LL AG+ L G+V+A I+TPLFVIFSPVLVPA IA + T+L+
Sbjct: 16 ALLTFAGITLGGSVVACIISTPLFVIFSPVLVPATIATTLLASGFTASGSFGATAFTILS 75
Query: 102 WIYRYVTGKHPP 113
W+Y+ TG+ P
Sbjct: 76 WLYKKRTGRDLP 87
>AT5G07550.2 | Symbols: ATGRP19, GRP19 | GRP19 (Glycine rich protein
19) | chr5:2388597-2389185 REVERSE
Length = 95
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 42 SLLILAGLMLAGTVIALTIATPLFVIFSPVLVPAVIAVSXXXXXXXXXXXXXXXXITVLA 101
+LL AG+ L G+V+A I+TPLFVIFSPVLVPA IA + T+L+
Sbjct: 16 ALLTFAGITLGGSVVACIISTPLFVIFSPVLVPATIATTLLASGFTASGSFGATAFTILS 75
Query: 102 WIYRYVTGKHPPGADQLD 119
W+Y+ + P ++D
Sbjct: 76 WLYK----EGPTKNSRID 89
>AT5G07560.1 | Symbols: ATGRP20, GRP20 | GRP20 (Glycine rich protein
20); nutrient reservoir | chr5:2390469-2391045 REVERSE
Length = 153
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 44/78 (56%)
Query: 36 AVTAGGSLLILAGLMLAGTVIALTIATPLFVIFSPVLVPAVIAVSXXXXXXXXXXXXXXX 95
A A LL+LAG+ L GT +AL + PLF++FSPVLVPA IA +
Sbjct: 37 ATEAAICLLLLAGISLTGTAVALFASMPLFLVFSPVLVPAGIATTILASGLMAGGTSGVS 96
Query: 96 XITVLAWIYRYVTGKHPP 113
+T+L W+Y+ TG+ P
Sbjct: 97 GLTILMWLYKKYTGRDFP 114
>AT5G07540.2 | Symbols: ATGRP16, ATGRP-6, GRP16 | GRP16 (Glycine
rich protein 16); nutrient reservoir |
chr5:2386328-2387207 REVERSE
Length = 190
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%)
Query: 43 LLILAGLMLAGTVIALTIATPLFVIFSPVLVPAVIAVSXXXXXXXXXXXXXXXXITVLAW 102
L+ AG+ +++ LTIATPLFVIFSP+LVPA IA + ++ W
Sbjct: 24 FLVFAGITFGASIVGLTIATPLFVIFSPILVPATIATTFLVGGATAAVALGVTAFALILW 83
Query: 103 IYRYVTGKHP 112
++++ G P
Sbjct: 84 LFKHRIGVKP 93
>AT5G07540.1 | Symbols: ATGRP16, ATGRP-6, GRP16 | GRP16 (Glycine
rich protein 16); nutrient reservoir |
chr5:2386213-2387207 REVERSE
Length = 244
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%)
Query: 43 LLILAGLMLAGTVIALTIATPLFVIFSPVLVPAVIAVSXXXXXXXXXXXXXXXXITVLAW 102
L+ AG+ +++ LTIATPLFVIFSP+LVPA IA + ++ W
Sbjct: 24 FLVFAGITFGASIVGLTIATPLFVIFSPILVPATIATTFLVGGATAAVALGVTAFALILW 83
Query: 103 IYRYVTGKHP 112
++++ G P
Sbjct: 84 LFKHRIGVKP 93
>AT5G07600.1 | Symbols: | oleosin / glycine-rich protein |
chr5:2404653-2405482 REVERSE
Length = 230
Score = 52.8 bits (125), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 29/37 (78%)
Query: 43 LLILAGLMLAGTVIALTIATPLFVIFSPVLVPAVIAV 79
+ +GL LAGT + LT+ TPLF+IFSP+LVPA IA+
Sbjct: 24 FFVFSGLTLAGTAVGLTVTTPLFIIFSPILVPATIAI 60
>AT5G07510.3 | Symbols: ATGRP14, GRP-4, ATGRP-4, GRP14 | GRP14
(Glycine rich protein 14) | chr5:2377859-2378764
REVERSE
Length = 185
Score = 52.4 bits (124), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 30/36 (83%)
Query: 43 LLILAGLMLAGTVIALTIATPLFVIFSPVLVPAVIA 78
L+LAGL LAG+ ALTI TPLF+IFSP+LVPA IA
Sbjct: 25 FLVLAGLTLAGSATALTITTPLFIIFSPILVPATIA 60
>AT5G07510.1 | Symbols: ATGRP14, GRP-4, ATGRP-4, GRP14 | GRP14
(Glycine rich protein 14); nutrient reservoir |
chr5:2377859-2378764 REVERSE
Length = 193
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 30/36 (83%)
Query: 43 LLILAGLMLAGTVIALTIATPLFVIFSPVLVPAVIA 78
L+LAGL LAG+ ALTI TPLF+IFSP+LVPA IA
Sbjct: 25 FLVLAGLTLAGSATALTITTPLFIIFSPILVPATIA 60
>AT5G07510.2 | Symbols: ATGRP14, GRP-4, ATGRP-4, GRP14 | GRP14
(Glycine rich protein 14); nutrient reservoir |
chr5:2377859-2378764 REVERSE
Length = 181
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 30/36 (83%)
Query: 43 LLILAGLMLAGTVIALTIATPLFVIFSPVLVPAVIA 78
L+LAGL LAG+ ALTI TPLF+IFSP+LVPA IA
Sbjct: 25 FLVLAGLTLAGSATALTITTPLFIIFSPILVPATIA 60
>AT5G61610.1 | Symbols: | glycine-rich protein / oleosin |
chr5:24787325-24788139 FORWARD
Length = 225
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 42 SLLILAGLMLAGTVIALTIATPLFVIFSPVLVPAVIAVSXXXXXXXXXXXXXXXXITVLA 101
S +IL GL AGT +ALT+ P+ V+ SP+LVPAVI S I +L
Sbjct: 20 SFMILTGLTFAGTAVALTVMIPVLVVLSPILVPAVITSSFLATGFLASGSLGALGIALLI 79
Query: 102 WIYR---------YVTGKHPPGADQL 118
W+Y+ + G P G ++L
Sbjct: 80 WLYKKEEYSRATLHARGGRPDGPNKL 105
>AT5G07550.3 | Symbols: ATGRP19, GRP19 | GRP19 (Glycine rich
protein 19) | chr5:2388619-2389185 REVERSE
Length = 71
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 31/39 (79%)
Query: 42 SLLILAGLMLAGTVIALTIATPLFVIFSPVLVPAVIAVS 80
+LL AG+ L G+V+A I+TPLFVIFSPVLVPA IA +
Sbjct: 16 ALLTFAGITLGGSVVACIISTPLFVIFSPVLVPATIATT 54
>AT5G07520.1 | Symbols: ATGRP18, ATGRP-8, GRP18 | GRP18 (Glycine
rich protein 18); nutrient reservoir |
chr5:2380209-2381231 REVERSE
Length = 228
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 29/38 (76%)
Query: 43 LLILAGLMLAGTVIALTIATPLFVIFSPVLVPAVIAVS 80
L+ AGL L G+ ALTI TPLF+IFSP+LVPA IA +
Sbjct: 24 FLVFAGLTLVGSATALTITTPLFIIFSPILVPATIATA 61
>AT3G18570.1 | Symbols: | glycine-rich protein / oleosin |
chr3:6396078-6396578 REVERSE
Length = 166
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 29/42 (69%)
Query: 97 ITVLAWIYRYVTGKHPPGADQLDTARHKLMNKAREIKDYGQQ 138
+ +++W YRY G HP G++Q+D AR ++ + A +KDY ++
Sbjct: 109 VALVSWTYRYFRGMHPVGSNQMDYARSRIYDTASHVKDYARE 150
>AT5G07530.2 | Symbols: ATGRP17, ATGRP-7, GRP17 | GRP17 (Glycine
rich protein 17) | chr5:2382630-2384496 REVERSE
Length = 512
Score = 48.5 bits (114), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 39/82 (47%)
Query: 31 IKAATAVTAGGSLLILAGLMLAGTVIALTIATPLFVIFSPVLVPAVIAVSXXXXXXXXXX 90
IK A A + A + LAG+ AL ++TP+F+IFSPVLVPA IA
Sbjct: 66 IKIIIASVASVIFVGFACVTLAGSAAALVVSTPVFIIFSPVLVPATIATVVLATGFTAGG 125
Query: 91 XXXXXXITVLAWIYRYVTGKHP 112
+ ++ W+ + G P
Sbjct: 126 SFGATALGLIMWLVKRRMGVKP 147
>AT3G27660.1 | Symbols: OLEO4 | OLEO4 (OLEOSIN4) |
chr3:10245088-10246058 FORWARD
Length = 191
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 54 TVIALTIATPLFVIFSPVLVPAVIAVSXXXXXXXXXXXXXXXXITVLAWIYRYVTGKHPP 113
+VI L ++ PLF++FSPV+VPA + + ++ ++W+ Y+ G
Sbjct: 76 SVIGLLVSIPLFLLFSPVIVPAALTIGLAVTGILASGLFGLTGLSSVSWVLNYLRGTSDT 135
Query: 114 GADQLDTARHKLMN-------KAREIKDYGQQQ 139
+QLD A+ ++ + K +E+ Y Q +
Sbjct: 136 VPEQLDYAKRRMADAVGYAGMKGKEMGQYVQDK 168
>AT5G07530.1 | Symbols: ATGRP17, ATGRP-7, GRP17 | GRP17 (Glycine
rich protein 17) | chr5:2382679-2384496 REVERSE
Length = 543
Score = 47.0 bits (110), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 39/82 (47%)
Query: 31 IKAATAVTAGGSLLILAGLMLAGTVIALTIATPLFVIFSPVLVPAVIAVSXXXXXXXXXX 90
IK A A + A + LAG+ AL ++TP+F+IFSPVLVPA IA
Sbjct: 66 IKIIIASVASVIFVGFACVTLAGSAAALVVSTPVFIIFSPVLVPATIATVVLATGFTAGG 125
Query: 91 XXXXXXITVLAWIYRYVTGKHP 112
+ ++ W+ + G P
Sbjct: 126 SFGATALGLIMWLVKRRMGVKP 147
>AT5G40420.1 | Symbols: PA23, OLEO2 | OLEO2 (OLEOSIN 2) |
chr5:16190850-16191968 REVERSE
Length = 199
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 18/99 (18%)
Query: 55 VIALTIATPLFVIFSPVLVPAVIAVSXXXXXXXXXXXXXXXXITVLAWIYRYVTGKHPPG 114
VI L +A PLF++FSPV+VPA + + ++ ++W+ Y+ G
Sbjct: 79 VIGLMVALPLFLLFSPVIVPAALTIGLAMTGFLASGMFGLTGLSSISWVMNYLRGTRRTV 138
Query: 115 ADQLDTARHKL------------------MNKAREIKDY 135
+QL+ A+ ++ NKA+++K Y
Sbjct: 139 PEQLEYAKRRMADAVGYAGQKGKEMGQHVQNKAQDVKQY 177
>AT1G48990.1 | Symbols: | glycine-rich protein / oleosin |
chr1:18125138-18125647 FORWARD
Length = 169
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 99 VLAWIYRYVTGKHPPGADQLDTARHKLMNKAREIKDYGQQQISG 142
V++W+YRY G HP +DQ+D AR ++ + A +KDY G
Sbjct: 117 VVSWLYRYFKGMHPLRSDQVDYARSRIHDTAAHVKDYAGGYFHG 160
>AT5G07571.1 | Symbols: | similar to GRP20 (Glycine rich protein
20), nutrient reservoir [Arabidopsis thaliana]
(TAIR:AT5G07560.1); similar to pollen coat
oleosin-glycine rich protein [Arabidopsis arenosa]
(GB:AAR15447.1); contains InterPro domain Oleosin;
(InterPro:IPR000136) | chr5:2396567-2397182 REVERSE
Length = 129
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 53 GTVIALTIATPLFVIFSPVLVPAVIAVSXXXXXXXXXXXXXXXXITVLAWIYR 105
GT +AL + PLF++FSPVLVPA I + +T+L W+Y+
Sbjct: 44 GTAMALAASMPLFLVFSPVLVPAGITATVLALSLMAGGTSGLTALTILTWLYK 96