Miyakogusa Predicted Gene
- chr5.CM0345.1450.nc
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr5.CM0345.1450.nc - phase: 1 /partial
(617 letters)
Database: TAIR8_pep
32,825 sequences; 13,166,001 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G11350.1 | Symbols: | endonuclease/exonuclease/phosphatase f... 239 5e-63
AT3G18500.2 | Symbols: | similar to endonuclease/exonuclease/ph... 158 8e-39
AT3G18500.1 | Symbols: | similar to endonuclease/exonuclease/ph... 158 1e-38
AT1G73875.1 | Symbols: | endonuclease/exonuclease/phosphatase f... 149 4e-36
AT3G58580.1 | Symbols: | hydrolase | chr3:21671843-21674674 REV... 62 9e-10
AT3G58560.1 | Symbols: | endonuclease/exonuclease/phosphatase f... 60 5e-09
AT1G02270.1 | Symbols: | endonuclease/exonuclease/phosphatase f... 45 1e-04
AT5G54130.2 | Symbols: | calcium-binding EF hand family protein... 45 1e-04
AT5G54130.4 | Symbols: | calcium-binding EF hand family protein... 45 2e-04
>AT5G11350.1 | Symbols: | endonuclease/exonuclease/phosphatase
family protein | chr5:3621584-3625413 FORWARD
Length = 754
Score = 239 bits (609), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 110/154 (71%), Positives = 130/154 (84%), Gaps = 6/154 (3%)
Query: 1 MRTGNPVDGCAIFWRTSRFNLLYEECIEFNKLGLRDNVAQICVLELI-----NQNGSLPP 55
MRTGN VDGCAIFWR++RF L++EE I+FN+LGLRDNVAQICVLE + +N + PP
Sbjct: 259 MRTGNAVDGCAIFWRSNRFKLVHEESIQFNQLGLRDNVAQICVLETLLTSHTKENETPPP 318
Query: 56 -SLKGSSKVVVCNIHVLYNPNRGEIKLGQVRVLLDKAKAVSELWNNAPIVICGDFNCTPK 114
S GS +VV+CNIHVL+NP RG+ KLGQVR LLDKA AVS+LW++APIV+CGDFNCTPK
Sbjct: 319 ESSAGSHRVVICNIHVLFNPKRGDFKLGQVRTLLDKAHAVSKLWDDAPIVLCGDFNCTPK 378
Query: 115 SPLYNFISEQKLDLSGIDRDKVSGQASATIRPPR 148
SPLYNFIS++KLDLSG+ RDKVSGQ SA RPPR
Sbjct: 379 SPLYNFISDRKLDLSGLARDKVSGQVSAEFRPPR 412
Score = 179 bits (453), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 86/129 (66%), Positives = 102/129 (79%), Gaps = 4/129 (3%)
Query: 482 LSPVPI---SKSIDPGKTTHNPSLWTPMEIKTAAGNAECTVLEHPLLLRSTYTEATMNCS 538
+S VP+ S++++ K T++PS WTPMEI TA G+ E T +EH L L+STY+E +
Sbjct: 618 VSEVPLKWSSEALNSDKITYSPSSWTPMEIATATGDPERTTVEHALELKSTYSEVEGQ-A 676
Query: 539 GTRDPHGEPLVTSYHRCFSGTVDYIWRSEGLQTTRVLAPIPKHVMEWTPGFPTKKWGSDH 598
TRD +GEP+VTSYHRCF GTVDYIWRSEGLQT RVLAPIPK M+WTPGFPT KWGSDH
Sbjct: 677 NTRDENGEPVVTSYHRCFMGTVDYIWRSEGLQTVRVLAPIPKQAMQWTPGFPTPKWGSDH 736
Query: 599 IALVSELAF 607
IALVSELAF
Sbjct: 737 IALVSELAF 745
>AT3G18500.2 | Symbols: | similar to
endonuclease/exonuclease/phosphatase family protein
[Arabidopsis thaliana] (TAIR:AT1G73875.1); similar to
unnamed protein product [Vitis vinifera]
(GB:CAO68025.1); contains InterPro domain
Endonuclease/exonuclease/phosphatase
(InterPro:IPR005135) | chr3:6352550-6355303 FORWARD
Length = 448
Score = 158 bits (400), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 82/182 (45%), Positives = 119/182 (65%), Gaps = 13/182 (7%)
Query: 2 RTGNPVDGCAIFWRTSRFNLLYEECIEFNKLGLRDNVAQICVLELINQNGSLPPSLKGSS 61
RTG+ VDGCA+FW+ RF +L E IEF++ G+RDNVAQ+ VLEL N S
Sbjct: 185 RTGDNVDGCAMFWKADRFGVLERENIEFSQFGMRDNVAQLAVLELRKSNKS--------R 236
Query: 62 KVVVCNIHVLYNPNRGEIKLGQVRVLLDKAKAVSELWNNAPIVICGDFNCTPKSPLYNFI 121
K+++ NIHVLYNPN+G++KLGQVR L KA +S+ W + PIV+CGDFN TPKSPLYNF+
Sbjct: 237 KILLGNIHVLYNPNQGDVKLGQVRSLCSKAHLLSKKWGDIPIVLCGDFNSTPKSPLYNFL 296
Query: 122 SEQKLDLSGIDRDKVSGQASATIRPPRRVGTNNSERPADGSVQVPSTEGDKEVKI--GQD 179
+ +L++ D+ ++SGQ + P +V S+ + S+ +E+++ GQ+
Sbjct: 297 ASSELNVMEHDKKELSGQKNCR---PTKVLETGSKSSNTITFSFCSSWTKEEIRVATGQE 353
Query: 180 SS 181
+S
Sbjct: 354 NS 355
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/111 (47%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 501 SLWTPMEIKTAAGNAECTVLEHPLLLRSTYTEATMNCSGTRDPHGEPLVTSYHRCFSGTV 560
S WT EI+ A G HPL L S+Y + + TRD GEPL TSYH F GTV
Sbjct: 339 SSWTKEEIRVATGQENSYWAAHPLKLNSSYA-SVKGSANTRDSVGEPLATSYHSKFLGTV 397
Query: 561 DYIWRSEGLQTTRVLAPIPKHVMEWTPGFPTKKWGSDHIALVSELAFLKEG 611
DY+W S+GL RVL +P V+ T G P ++ GSDH+ALVSE F +G
Sbjct: 398 DYLWYSDGLLPARVLDTLPIDVLCKTKGLPCQELGSDHLALVSEFVFEPDG 448
>AT3G18500.1 | Symbols: | similar to
endonuclease/exonuclease/phosphatase family protein
[Arabidopsis thaliana] (TAIR:AT1G73875.1); similar to
unnamed protein product [Vitis vinifera]
(GB:CAO68025.1); contains InterPro domain
Endonuclease/exonuclease/phosphatase
(InterPro:IPR005135) | chr3:6352550-6355303 FORWARD
Length = 426
Score = 158 bits (399), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 82/182 (45%), Positives = 119/182 (65%), Gaps = 13/182 (7%)
Query: 2 RTGNPVDGCAIFWRTSRFNLLYEECIEFNKLGLRDNVAQICVLELINQNGSLPPSLKGSS 61
RTG+ VDGCA+FW+ RF +L E IEF++ G+RDNVAQ+ VLEL N S
Sbjct: 163 RTGDNVDGCAMFWKADRFGVLERENIEFSQFGMRDNVAQLAVLELRKSNKS--------R 214
Query: 62 KVVVCNIHVLYNPNRGEIKLGQVRVLLDKAKAVSELWNNAPIVICGDFNCTPKSPLYNFI 121
K+++ NIHVLYNPN+G++KLGQVR L KA +S+ W + PIV+CGDFN TPKSPLYNF+
Sbjct: 215 KILLGNIHVLYNPNQGDVKLGQVRSLCSKAHLLSKKWGDIPIVLCGDFNSTPKSPLYNFL 274
Query: 122 SEQKLDLSGIDRDKVSGQASATIRPPRRVGTNNSERPADGSVQVPSTEGDKEVKI--GQD 179
+ +L++ D+ ++SGQ + P +V S+ + S+ +E+++ GQ+
Sbjct: 275 ASSELNVMEHDKKELSGQKNCR---PTKVLETGSKSSNTITFSFCSSWTKEEIRVATGQE 331
Query: 180 SS 181
+S
Sbjct: 332 NS 333
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/111 (47%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 501 SLWTPMEIKTAAGNAECTVLEHPLLLRSTYTEATMNCSGTRDPHGEPLVTSYHRCFSGTV 560
S WT EI+ A G HPL L S+Y + + TRD GEPL TSYH F GTV
Sbjct: 317 SSWTKEEIRVATGQENSYWAAHPLKLNSSYA-SVKGSANTRDSVGEPLATSYHSKFLGTV 375
Query: 561 DYIWRSEGLQTTRVLAPIPKHVMEWTPGFPTKKWGSDHIALVSELAFLKEG 611
DY+W S+GL RVL +P V+ T G P ++ GSDH+ALVSE F +G
Sbjct: 376 DYLWYSDGLLPARVLDTLPIDVLCKTKGLPCQELGSDHLALVSEFVFEPDG 426
>AT1G73875.1 | Symbols: | endonuclease/exonuclease/phosphatase
family protein | chr1:27784773-27788232 FORWARD
Length = 454
Score = 149 bits (377), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 77/166 (46%), Positives = 104/166 (62%), Gaps = 7/166 (4%)
Query: 2 RTGNPVDGCAIFWRTSRFNLLYEECIEFNKLGLRDNVAQICVLELINQNGSLPPSLKGSS 61
RTG DGCAIFW+ + F LL + IEF+K G+R+NVAQ+CVLE+ N L+ S
Sbjct: 176 RTGEASDGCAIFWKENLFELLDHQHIEFDKFGMRNNVAQLCVLEM-NCEEDPKSKLRVRS 234
Query: 62 ----KVVVCNIHVLYNPNRGEIKLGQVRVLLDKAKAVSELWNNAPIVICGDFNCTPKSPL 117
++VV NIHVL+NP RG+IKLGQVR+ L+KA +S+ W N P+ I GD N TP+S +
Sbjct: 235 SDPRRLVVGNIHVLFNPKRGDIKLGQVRLFLEKAYKLSQEWGNIPVAIAGDLNSTPQSAI 294
Query: 118 YNFISEQKLDLSGIDRDKVSGQASATIRPPRRVGTNNSERPADGSV 163
Y+FI+ LD DR ++SGQ + P R N+ A S+
Sbjct: 295 YDFIASADLDTQLHDRRQISGQTE--VEPKERSFRNHYAFSASASI 338
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/108 (43%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
Query: 503 WTPMEIKTAAGNAECTVLEHPLLLRSTYTEATMNCSGTRDPHGEPLVTSYHRCFSGTVDY 562
W+ E++ A G E T ++H L L S Y+ TRD GEPL T+YH F GTVDY
Sbjct: 346 WSQEELQLATGGQETTHVQHQLKLNSAYS-GVPGTYRTRDQRGEPLATTYHSRFLGTVDY 404
Query: 563 IWRSEGLQTTRVLAPIPKHVMEWTPGFPTKKWGSDHIALVSELAFLKE 610
IW ++ L RVL +P V+ T G P++ WGSDH+A+ EL F+ +
Sbjct: 405 IWHTKELVPVRVLETLPADVLRRTGGLPSENWGSDHLAIACELGFVND 452
>AT3G58580.1 | Symbols: | hydrolase | chr3:21671843-21674674
REVERSE
Length = 603
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 66/141 (46%), Gaps = 22/141 (15%)
Query: 7 VDGCAIFWRTSRFNLLYEECIEFNKLG--------------------LRDNVAQICVLEL 46
+DGCA F+R RF+ + + +EFNK ++DN+A I VLE
Sbjct: 340 IDGCATFFRRDRFSHVKKYDVEFNKAAQSLTDALIPQAQKRTALNRLVKDNIALIVVLEA 399
Query: 47 INQNGSLPPSLKGSSKVVVCNIHVLYNPNRGEIKLGQVRVLLDKAKAVSELWNNAPIVIC 106
N PS K + V N HV + ++KL QV LL + ++ + P+++C
Sbjct: 400 KFGNQPTDPSGK-RQLICVANTHVNVQQDLKDVKLWQVHTLLKGLEKIAAS-ADIPMLVC 457
Query: 107 GDFNCTPKSPLYNFISEQKLD 127
GDFN P S + + K+D
Sbjct: 458 GDFNTLPGSAPHTLLVMGKVD 478
>AT3G58560.1 | Symbols: | endonuclease/exonuclease/phosphatase
family protein | chr3:21661857-21664873 REVERSE
Length = 602
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 69/144 (47%), Gaps = 24/144 (16%)
Query: 5 NPVDGCAIFWRTSRFNLLYEECIEFNKLG--------------------LRDNVAQICVL 44
N +DGCA F+R RF+ + + +EFNK ++DNVA I VL
Sbjct: 335 NTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTEAIIPVSQKKNALNRLVKDNVALIVVL 394
Query: 45 ELINQNGSLPPSLKGSSKVV-VCNIHVLYNPNRGEIKLGQVRVLLDKAKAVSELWNNAPI 103
E + GS G +++ V N HV ++KL QV LL + ++ + P+
Sbjct: 395 E--AKFGSQAADNPGKRQLLCVANTHVNVPHELKDVKLWQVHTLLKGLEKIAA-SADIPM 451
Query: 104 VICGDFNCTPKSPLYNFISEQKLD 127
++CGDFN P S + ++ K+D
Sbjct: 452 LVCGDFNTVPASAPHTLLAVGKVD 475
>AT1G02270.1 | Symbols: | endonuclease/exonuclease/phosphatase
family protein / calcium-binding EF hand family protein
| chr1:443301-446197 REVERSE
Length = 484
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 15/131 (11%)
Query: 2 RTGNPVDGCAIFWRTSRFNLLYEECIEFNKLGLRDNVAQICVLELINQNGSLPPSLKG-- 59
RT + DG F ++ + FN G D VAQ L++ +P L G
Sbjct: 153 RTNSRGDGLLTAIHKDHFKVVNYRELLFNDFG--DRVAQ-----LLHVKTVIPFPLNGKQ 205
Query: 60 --SSKVVVCNIHVLY--NPNRGEIKLGQVRVLLDKAKAVSE--LWNNAPIVICGDFNCTP 113
+V++ N H+L+ + + ++L QV +L+ +A + N+ PI++CGD+N +
Sbjct: 206 DVQQEVIIVNTHLLFPHDSSLSIVRLHQVYKILEYLEAYQKENKLNHMPIILCGDWNGSK 265
Query: 114 KSPLYNFISEQ 124
+ +Y F+ Q
Sbjct: 266 RGHVYKFLRSQ 276
>AT5G54130.2 | Symbols: | calcium-binding EF hand family protein |
chr5:21980126-21982505 FORWARD
Length = 436
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 14/129 (10%)
Query: 2 RTGNPVDGCAIFWRTSRFNLLYEECIEFNKLGLRDNVAQICVLELINQNGSLPP--SLKG 59
RT N DG F ++ + FN G D VAQ+ +EL+ PP
Sbjct: 108 RTNNRGDGLLTAVHKDYFRVVNSRDLLFNDCG--DRVAQLLHVELV------PPYSQYDA 159
Query: 60 SSKVVVCNIHVLY--NPNRGEIKLGQVRVLLDKAKAVSELWNNAP--IVICGDFNCTPKS 115
+V++ N H+L+ + ++L QV +L ++ + N +P I++CGD+N + +
Sbjct: 160 HQEVLIVNTHLLFPHDSTLSIVRLQQVYKILQYVESYQKEVNLSPMPIILCGDWNGSKRG 219
Query: 116 PLYNFISEQ 124
+Y F+ Q
Sbjct: 220 HVYKFLRSQ 228
>AT5G54130.4 | Symbols: | calcium-binding EF hand family protein |
chr5:21980126-21982067 FORWARD
Length = 351
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 14/129 (10%)
Query: 2 RTGNPVDGCAIFWRTSRFNLLYEECIEFNKLGLRDNVAQICVLELINQNGSLPP--SLKG 59
RT N DG F ++ + FN G D VAQ+ +EL+ PP
Sbjct: 108 RTNNRGDGLLTAVHKDYFRVVNSRDLLFNDCG--DRVAQLLHVELV------PPYSQYDA 159
Query: 60 SSKVVVCNIHVLY--NPNRGEIKLGQVRVLLDKAKAVSELWNNAP--IVICGDFNCTPKS 115
+V++ N H+L+ + ++L QV +L ++ + N +P I++CGD+N + +
Sbjct: 160 HQEVLIVNTHLLFPHDSTLSIVRLQQVYKILQYVESYQKEVNLSPMPIILCGDWNGSKRG 219
Query: 116 PLYNFISEQ 124
+Y F+ Q
Sbjct: 220 HVYKFLRSQ 228