Miyakogusa Predicted Gene
- chr5.CM0260.430.nc
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr5.CM0260.430.nc - phase: 0
(806 letters)
Database: TAIR8_pep
32,825 sequences; 13,166,001 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G28060.1 | Symbols: | small nuclear ribonucleoprotein family... 632 0.0
AT3G55930.1 | Symbols: | RNA splicing factor-related | chr3:207... 286 5e-77
AT3G56790.1 | Symbols: | RNA splicing factor-related | chr3:210... 59 1e-08
>AT1G28060.1 | Symbols: | small nuclear ribonucleoprotein family
protein / snRNP family protein | chr1:9779154-9782473
FORWARD
Length = 786
Score = 632 bits (1629), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/683 (48%), Positives = 417/683 (61%), Gaps = 50/683 (7%)
Query: 137 ENDDTQFNNGNEEHATASVQNGTTALGLPAVAPTSVP-ETSLAPXXXXXXXXXXXXXXNE 195
EN D Q + G + N T+ + + A +S+P E S AP +E
Sbjct: 138 ENKDAQVSEG------SGATNPTSGVTMGASTYSSIPSEASAAPSQTLLTKVSSISTTDE 191
Query: 196 NKGVSITRSHEVXXXXXXXXXXXXXXKPGRLNIEV-----IXXXXXXXXXXXXXXXXXXN 250
NK S+ RSHEV N+ + N
Sbjct: 192 NKA-SVVRSHEVPGKSSTDGRPLSTAGKSSANLPLDSSALAAKARKALQLQKGLADRLKN 250
Query: 251 LPLSNKISTPNNE----------STVPSLSVEKXXXXXXXXXXXXXXXMSIFPNXXXXXX 300
LPL K + P +E +T P++S S P+
Sbjct: 251 LPLLKKATKPTSEGSPHTRVPPSTTTPAVST-------------GTSFASTLPHTGLAGF 297
Query: 301 XXXXXXXXXXXXXGVPNYEAVRRAQELAARMGFRQDPQFAPLINMFPGQMVPDVTIPQKP 360
+ N EAV+RAQELAA MGF QD +FAP+IN+FPGQ D+T+ Q+P
Sbjct: 298 G------------SIANIEAVKRAQELAANMGFHQDREFAPVINLFPGQAPSDMTVAQRP 345
Query: 361 TKAPVLRLDAQGREIDEHGNVVNVTKPSNLSTLKVNINKQKKDAFEILKPVLDVDPDSNP 420
K PVLR+DA GREIDEHGNV++VTKPSNLSTLKVNINK+KKDAF+ILKP L+ D NP
Sbjct: 346 EKPPVLRVDALGREIDEHGNVISVTKPSNLSTLKVNINKKKKDAFQILKPQLEADLKENP 405
Query: 421 HFDPRMGVNKTKLLRPKRNNFLFVEEGKWSKDAETIKLKSQFGXXXXXXXXXXXXXXXXX 480
+FD RMG+++ K+LRPKR +F FVEEGKW++DAE +K KS FG
Sbjct: 406 YFDTRMGIDEKKILRPKRMSFQFVEEGKWTRDAENLKFKSHFGEAKAKELKVKQAQLAKA 465
Query: 481 XXXPDINPNLIEITERVVIKEKLKDPIPEIEWWDLPLLQSGNYGDIADGSIDEDKLKMEK 540
DINPNLIE++ERV KEK K+PIP++EWWD +L +G YG+I DG+I E LK+EK
Sbjct: 466 ND--DINPNLIEVSERVPRKEKPKEPIPDVEWWDANVLTNGEYGEITDGTITESHLKIEK 523
Query: 541 ITFYVEHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIAKEKDRQEMIRQGVIEPPK 600
+T Y+EH +AKEK++QEMIRQG++EPPK
Sbjct: 524 LTHYIEHPRPIEPPAEAAPPPPQPLKLTKKEQKKLRTQRRLAKEKEKQEMIRQGLLEPPK 583
Query: 601 PKVKISNLMKVLGAEATQDPTRLEKEIRSAAAEREQAHIDRNIARKLTPAELREKKERKL 660
KVK+SNLMKVLG+EATQDPT+LEKEIR+AAAEREQAH DRN ARKLTPAE REKKERKL
Sbjct: 584 AKVKMSNLMKVLGSEATQDPTKLEKEIRTAAAEREQAHTDRNAARKLTPAEKREKKERKL 643
Query: 661 FDDPNTVETLVSLYRINDLSHPKARFRVDVNAQENRLTGCAVISDGMSIVVVEGGSKSIK 720
FDDP TVET+VS+Y+I LSHPK RF+V++NA+ENRLTGC+V++D MS+VVVEG SK+IK
Sbjct: 644 FDDPTTVETIVSVYKIKKLSHPKTRFKVEMNARENRLTGCSVMTDEMSVVVVEGKSKAIK 703
Query: 721 RYGKLMLRRINWSDVXXXXXXXXXXXXXXPVNKCVLVWQGSVAKPSFNRFSVHDCITEAA 780
RYGKLM++RINW + NKC LVWQGS+ KPSF+RF VH+C+TE+
Sbjct: 704 RYGKLMMKRINWEEAERKEGNEDEEEEVNGGNKCWLVWQGSIGKPSFHRFHVHECVTEST 763
Query: 781 ARKVFVDAGVPHYWDQAVNYVDD 803
A+KVF+DAGV HYWD AVNY DD
Sbjct: 764 AKKVFMDAGVVHYWDLAVNYSDD 786
>AT3G55930.1 | Symbols: | RNA splicing factor-related |
chr3:20756361-20757943 REVERSE
Length = 437
Score = 286 bits (731), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 151/299 (50%), Positives = 192/299 (64%), Gaps = 14/299 (4%)
Query: 511 EWWDLPLLQSGNYGDIADG-------SIDEDKLKMEKITFYVEHXXXXXXXXXXXXXXXX 563
EWWD +L +++ +I E+ L M+ ++EH
Sbjct: 144 EWWDAKILTDDTINELSCDPNILIMDTITENHLNMKVFNCHIEHPFPIEPPAEAASPPPQ 203
Query: 564 XXXXXXXXXXXXXXXXXIAKEKDRQEMIRQGVIEPPKPKVKISNLMKVLGAEATQDPTRL 623
+AKE +++EMI QG +EP K KVK+SNLMKV +EATQ+PT+L
Sbjct: 204 PLKMTKEERKKLRTLRRVAKEMEKREMISQGRVEPQKSKVKMSNLMKVRASEATQNPTKL 263
Query: 624 EKEIRSAAAEREQAHIDRNIARKLTPAELREKKERKLFDDPNT-VETLVSLYRIN-DLSH 681
EKEIR+ AAEREQAH+DRN+ARKLTPAE REKKERKLF DP T VET+VS+Y+IN LS
Sbjct: 264 EKEIRTEAAEREQAHMDRNVARKLTPAEKREKKERKLFGDPTTVVETIVSVYKINKKLSD 323
Query: 682 PKARFRVDVNAQENRLTGCAVISDGMSIVVVEGGSKSIKRYGKLMLRRINWSDVXXXXXX 741
PK RF+V +NA++N LTG +V+ DGMS+VVVEG K+I RY KLML+RINW +
Sbjct: 324 PKTRFKVRMNAKQNILTGFSVMMDGMSVVVVEGKRKAINRYEKLMLKRINWEEAEKKEDE 383
Query: 742 XXXXXXXXPVNKCVLVWQGSVAKPSFNRFSVHDCITEAAARKVFVDAGVPHYWDQAVNY 800
NKC LVWQGSV KPSF+RF V +C+T++ A+KVF DAGV HYWD A+NY
Sbjct: 384 EENGG-----NKCCLVWQGSVEKPSFHRFHVQECLTKSDAKKVFNDAGVAHYWDLALNY 437
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 38/54 (70%), Gaps = 4/54 (7%)
Query: 348 GQMVPDVT----IPQKPTKAPVLRLDAQGREIDEHGNVVNVTKPSNLSTLKVNI 397
GQ++ V + K TK VLR+DA GREIDEHGNV++VTKP N STL VNI
Sbjct: 76 GQIIVAVKRFQDLAHKQTKGFVLRVDALGREIDEHGNVISVTKPINHSTLMVNI 129
>AT3G56790.1 | Symbols: | RNA splicing factor-related |
chr3:21044814-21045434 REVERSE
Length = 206
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 47/93 (50%), Gaps = 30/93 (32%)
Query: 319 EAVRRAQELAARMGFRQDPQFAPLINMFPGQMVPDVTIPQKPTKAPVLRLDAQGREIDEH 378
EAV+R QELA D + K TK LR+D GREIDE+
Sbjct: 81 EAVKRFQELAI-----------------------DTAVAHKQTKGFFLRVDVLGREIDEY 117
Query: 379 GNVVNVTKPSNLSTLKVNINKQKKDAFE-ILKP 410
G+V+ NLSTL VN NK KKD F+ ILKP
Sbjct: 118 GHVI------NLSTLMVNNNKHKKDVFQNILKP 144
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/40 (67%), Positives = 34/40 (85%), Gaps = 1/40 (2%)
Query: 581 IAKEKDRQEMIRQGVIEPPKPKVKISNLMKVLGAE-ATQD 619
+AKEK++Q+MIRQ + EP K KVK+SNLMKVL +E ATQD
Sbjct: 164 VAKEKEKQKMIRQALFEPQKSKVKLSNLMKVLASELATQD 203