Miyakogusa Predicted Gene

chr5.CM0260.300.nc

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr5.CM0260.300.nc - phase: 0 /partial
         (318 letters)

Database: TAIR8_pep 
           32,825 sequences; 13,166,001 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G13560.1 | Symbols:  | similar to unknown protein [Arabidopsi...   310   7e-85
AT2G37370.1 | Symbols:  | similar to unknown protein [Arabidopsi...   237   9e-63

>AT5G13560.1 | Symbols:  | similar to unknown protein [Arabidopsis
           thaliana] (TAIR:AT2G37370.1); similar to unnamed protein
           product [Vitis vinifera] (GB:CAO18081.1); similar to
           unnamed protein product [Vitis vinifera] (GB:CAO41569.1)
           | chr5:4361582-4366321 REVERSE
          Length = 679

 Score =  310 bits (795), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 179/310 (57%), Positives = 226/310 (72%), Gaps = 5/310 (1%)

Query: 1   VNSSLAAAQARLSNVKEERDQFEEANNQIVEHLKIKEDELSKSISSCRIEADVIKTWINF 60
           VN SLAAAQAR  N  EERDQF EANNQI+ HLK K+D+LSKS+ +C+ EA+VIKTWINF
Sbjct: 372 VNLSLAAAQARFRNATEERDQFGEANNQIIAHLKTKDDDLSKSVVACKKEAEVIKTWINF 431

Query: 61  LEDTWVLQRSNAEINEKQVNDELERHEDYFVDLAIQLLTAYQKELDPCVNHIETFVVNLK 120
           LEDTW+LQ S+ E  +KQ  DELE+HEDYF D+A+ +L+ Y+KE+ P ++ IE +V NLK
Sbjct: 432 LEDTWLLQCSHIETKDKQTLDELEKHEDYFSDVALNILSVYKKEVAPLISRIENYVENLK 491

Query: 121 NLSLRLEMSSNADTEDSKVLSPRRNLEEEYLTYEAKIITTFSVVDNMKQQFYSQQGKISR 180
           NL    E   NAD  D++V +PR+ LEEEY+ YE KIITTFS+VDN+K+QF   Q K+ +
Sbjct: 492 NLGPGSEKPPNADQGDNQVSNPRKILEEEYIDYETKIITTFSIVDNVKEQFQVLQSKLDK 551

Query: 181 KDEDRVKELFDAIEKIRTQFESIERPVLEIESPSAHTESSLTEKKSDETPSPSAPAQGTP 240
           KD+ RVKELFD +EK+R QFESI RP LEIE PS    SS+T  KS  T SP +P   + 
Sbjct: 552 KDDRRVKELFDDMEKMRQQFESIARPTLEIEIPSPR--SSVTSPKSSAT-SPKSPKPSSS 608

Query: 241 SPSASARDTDFLKPETDEQPKSSSVSAG--QVLDHEAELAKLESEFGKVSHDYSTEEIGD 298
           S +AS   T   KPE    P++ + +AG  Q  + EAELA+LESEFGKV+ DYS +E+  
Sbjct: 609 SMNASTESTQTQKPELSNSPQAPNPAAGSSQEFNPEAELAELESEFGKVARDYSADEVDG 668

Query: 299 WEFDELEREL 308
           WEFDELE+EL
Sbjct: 669 WEFDELEKEL 678


>AT2G37370.1 | Symbols:  | similar to unknown protein [Arabidopsis
           thaliana] (TAIR:AT5G13560.1); similar to unnamed protein
           product [Vitis vinifera] (GB:CAO18081.1) |
           chr2:15686352-15690011 FORWARD
          Length = 669

 Score =  237 bits (604), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 139/316 (43%), Positives = 201/316 (63%), Gaps = 20/316 (6%)

Query: 1   VNSSLAAAQARLSNVKEERDQFEEANNQIVEHLKIKEDELSKSISSCRIEADVIKTWINF 60
           VN+S+ +A+ARL N +EER+QF+ A+N+I+ HLK KE+EL++SI+SCR+EADV+  WI F
Sbjct: 372 VNTSITSARARLRNAQEEREQFDNASNEILMHLKSKEEELTRSITSCRVEADVVNKWIKF 431

Query: 61  LEDTWVLQRSNAEINEKQVNDELERHEDYFVDLAIQLLTAYQKELDPCVNHIETFVVNLK 120
           LEDTW+LQ   ++  + QV+ E+ER+ D+F+DL +QLL+ Y+++LDP +  I   V +L+
Sbjct: 432 LEDTWILQSKFSQQKDNQVSGEMERYSDHFIDLIVQLLSFYKEQLDPYIPKIRGVVASLE 491

Query: 121 NLSLRLEMSSNADTEDSKVLSPRRNLEEEYLTYEAKIITTFSVVDNMKQQFYSQQGKISR 180
             S  LE     D +D+K    R+ LE+EYL  EAK +TT SVVD MK+ FYSQ   ISR
Sbjct: 492 P-SKGLEAEKIIDNKDTKPFESRKQLEKEYLDLEAKFVTTLSVVDAMKKPFYSQTEGISR 550

Query: 181 KDEDRVKELFDAIEKIRTQFESIERPVLEIESPSAHTESSLTE--KKSDETPSPSAPAQG 238
           KD+ RVKELF+ ++K + +FE+IERP+L+IESPS  + SS +   K + ETP        
Sbjct: 551 KDDKRVKELFEVLDKTKQEFEAIERPLLDIESPSRTSSSSRSPSLKMTHETP-------- 602

Query: 239 TPSPSASARDTDFLKPETDEQPKSSSVSAGQVLDHEAELAKLESEFGKVSHDYSTEEIGD 298
                    DT       D+ P S   S+G+  + +    +LE E      ++  +EI D
Sbjct: 603 -------LSDTVLKLSGGDDSPDSKKGSSGK--EEDPAKKQLELELDVDGEEFLADEIND 653

Query: 299 WEFDELERELDSGNSA 314
           WEFD L+  L S  S+
Sbjct: 654 WEFDALDETLTSKTSS 669