Miyakogusa Predicted Gene
- chr5.CM0200.950.nc
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr5.CM0200.950.nc + phase: 0
(966 letters)
Database: TAIR8_pep
32,825 sequences; 13,166,001 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G19510.1 | Symbols: HAT3.1 | homeobox protein (HAT 3.1) | chr... 313 3e-85
AT4G29940.1 | Symbols: PRHA | PRHA (PATHOGENESIS RELATED HOMEODO... 206 5e-53
AT1G77250.1 | Symbols: | PHD finger family protein | chr1:29025... 49 1e-05
AT3G01460.1 | Symbols: MBD9 | MBD9 (METHYL-CPG-BINDING DOMAIN 9)... 49 2e-05
AT3G14740.2 | Symbols: | PHD finger family protein | chr3:49521... 45 2e-04
AT3G14740.1 | Symbols: | PHD finger family protein | chr3:49521... 45 2e-04
AT1G05380.2 | Symbols: | similar to PHD finger transcription fa... 44 6e-04
AT1G05380.1 | Symbols: | DNA binding | chr1:1577230-1582189 FOR... 44 6e-04
AT4G14700.1 | Symbols: ATORC1A, ORC1A | ATORC1A/ORC1A (ORIGIN OF... 44 6e-04
>AT3G19510.1 | Symbols: HAT3.1 | homeobox protein (HAT 3.1) |
chr3:6763211-6766055 REVERSE
Length = 723
Score = 313 bits (802), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 135/192 (70%), Positives = 164/192 (85%), Gaps = 3/192 (1%)
Query: 399 DQFYKIKAHLRYLLNRVSYEQNLIDAYSGDGWKGYSMDKLKPDKEIQRAKSEILRRKLKI 458
D++ +IK LRY LNR++YEQ+LIDAYS +GWKG S++K++P+KE++RA EILRRKLKI
Sbjct: 175 DEYTRIKKKLRYFLNRINYEQSLIDAYSLEGWKGSSLEKIRPEKELERATKEILRRKLKI 234
Query: 459 RDLFQNLDSLCAEGKFPESLFDSEGEIDSEDIFCSICQTKELSTDNDIILCDGACDRGFH 518
RDLFQ+LD+LCAEG PESLFD++GEI SEDIFC+ C +K+LS DNDIILCDG CDRGFH
Sbjct: 235 RDLFQHLDTLCAEGSLPESLFDTDGEISSEDIFCAKCGSKDLSVDNDIILCDGFCDRGFH 294
Query: 519 QHCLDPPLLTEDIPPGDEGWLCPGCDCKDDCVDLLNDSLGTRLSLSDTWEKVFPEAAAVT 578
Q+CL+PPL EDIPP DEGWLCPGCDCKDD +DLLNDSLGT+ S+SD+WEK+FPEAAA
Sbjct: 295 QYCLEPPLRKEDIPPDDEGWLCPGCDCKDDSLDLLNDSLGTKFSVSDSWEKIFPEAAAAL 354
Query: 579 ---GNNMDQGLP 587
G N+D LP
Sbjct: 355 VGGGQNLDCDLP 366
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 90/163 (55%), Gaps = 10/163 (6%)
Query: 718 EEGFTPVSGKRNVERLDYKKLYDETYKSDTSEDEEWTASATPSRKKKLC------GKMTP 771
++G VS +RNVERLDYKKLYDE Y + + + +R K G P
Sbjct: 508 DDGPAGVSRRRNVERLDYKKLYDEEYDNVPTSSSDDDDWDKTARMGKEDSESEDEGDTVP 567
Query: 772 VSSDGKASNNSRHTPERNTQQDKVENTNNSPTKSLEGCLESGSRDKKPRSSTRQ-RLGDV 830
+ ++SN HT ++ ++ K + ++ EG E+G + +SS+ + D
Sbjct: 568 LK---QSSNAEDHTSKKLIRKSKRADKKDTLEMPQEGPGENGGSGEIEKSSSSACKQTDP 624
Query: 831 VVQRLHKSFKDNQYPDRATKESLAEELGLTFFQVDKWFGNARW 873
QRL+ SF++NQYPD+ATKESLA+EL +T QV+ WF + RW
Sbjct: 625 KTQRLYISFQENQYPDKATKESLAKELQMTVKQVNNWFKHRRW 667
>AT4G29940.1 | Symbols: PRHA | PRHA (PATHOGENESIS RELATED
HOMEODOMAIN PROTEIN A); transcription factor |
chr4:14648352-14652716 REVERSE
Length = 796
Score = 206 bits (525), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 86/179 (48%), Positives = 120/179 (67%)
Query: 399 DQFYKIKAHLRYLLNRVSYEQNLIDAYSGDGWKGYSMDKLKPDKEIQRAKSEILRRKLKI 458
D +++ RYLL ++ +QNLIDAY+ +GWKG S +K++PDKE++RA+ EIL KL +
Sbjct: 100 DDSLRLQRRTRYLLIKMKMQQNLIDAYATEGWKGQSREKIRPDKELERARKEILNCKLGL 159
Query: 459 RDLFQNLDSLCAEGKFPESLFDSEGEIDSEDIFCSICQTKELSTDNDIILCDGACDRGFH 518
RD + LD L + G E + S+G I + IFC+ C ++E DNDIILCDG C+R FH
Sbjct: 160 RDAIRQLDLLSSVGSMEEKVIASDGSIHHDHIFCAECNSREAFPDNDIILCDGTCNRAFH 219
Query: 519 QHCLDPPLLTEDIPPGDEGWLCPGCDCKDDCVDLLNDSLGTRLSLSDTWEKVFPEAAAV 577
Q CLDPPL TE IPPGD+GW C CDCK + +D +N +GT + W+ +F E A++
Sbjct: 220 QKCLDPPLETESIPPGDQGWFCKFCDCKIEIIDTMNAQIGTHFPVDSNWQDIFNEEASL 278
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 81/188 (43%), Gaps = 25/188 (13%)
Query: 724 VSGKRNVERLDYKKLYDETYKSDT------SEDEEWTASATPSRKKKLCGKMTPVSSDGK 777
V G R +DY +LY E + D SEDE+W + RK++ T V+
Sbjct: 368 VCGPRQRRTVDYTQLYYEMFGKDAVLQEQGSEDEDWGPNDRRKRKRESDAGSTLVTMCES 427
Query: 778 ASNNSRHTPERNTQQDKVENTNNSPTKSLEGCLESGSRDKKPRSSTRQRLGDVVVQRLHK 837
+ + QD VE S S+ S + K RL V++L +
Sbjct: 428 SKKD----------QDVVETLEQSERDSV-------SVENKGGRRRMFRLPRNAVEKLRQ 470
Query: 838 SFKDNQYPDRATKESLAEELGLTFFQVDKWFGNARWGFRRSSRMGA--SPGEYASPQATG 895
F + + P +A ++ LA+EL L +V+KWF N R+ R+ + + PG+ +
Sbjct: 471 VFAETELPSKAVRDRLAKELSLDPEKVNKWFKNTRYMALRNRKTESVKQPGDSKTVSGGD 530
Query: 896 SGPENTGE 903
SGPE E
Sbjct: 531 SGPEAVME 538
>AT1G77250.1 | Symbols: | PHD finger family protein |
chr1:29025338-29027832 REVERSE
Length = 522
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 8/56 (14%)
Query: 491 FCSICQTKELSTDND---IILCDGACDRGFHQHCLDPPLLTEDIPPGDEGWLCPGC 543
+CS C + TD D I+LCDG CD +H +C+ PP E +P G+ W C C
Sbjct: 399 YCSSCLCRNCLTDKDDDKIVLCDG-CDDAYHIYCMRPP--CESVPNGE--WFCTAC 449
>AT3G01460.1 | Symbols: MBD9 | MBD9 (METHYL-CPG-BINDING DOMAIN 9); DNA
binding | chr3:173323-182045 FORWARD
Length = 2176
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 59/109 (54%), Gaps = 24/109 (22%)
Query: 435 MDKLKPDKEIQRAKSEILRRKLKIRDLFQNLDSLCAEGKFPESLFDSEGEIDSEDIFCSI 494
+ KLK ++++ +E+ K +I+D+ +++ K P++ +D EG C +
Sbjct: 1250 VQKLKDYRKLECLSAEM---KKEIKDIVVSVN------KLPKAPWD-EG-------VCKV 1292
Query: 495 CQTKELSTDNDIILCDGACDRGFHQHCLDPPLLTEDIPPGDEGWLCPGC 543
C + D+ ++LCD CD +H +CL+PPL+ IP G+ W CP C
Sbjct: 1293 CGVDK--DDDSVLLCD-TCDAEYHTYCLNPPLIR--IPDGN--WYCPSC 1334
>AT3G14740.2 | Symbols: | PHD finger family protein |
chr3:4952192-4953313 REVERSE
Length = 343
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 45/82 (54%), Gaps = 9/82 (10%)
Query: 463 QNLDSLCAEGKFPESLFDSEGEIDSED-IFCSICQTKELSTDNDIILCDGACDRGFHQHC 521
+N+D L +GK +L S+ E++ ED I C++CQ+ + N I+ CDG CD H C
Sbjct: 127 ENIDPL-GKGK---ALDLSDREVEDEDGIMCAVCQSTDGDPLNPIVFCDG-CDLMVHASC 181
Query: 522 LDPPLLTEDIPPGDEGWLCPGC 543
PL+ IP GD W C C
Sbjct: 182 YGNPLVKA-IPEGD--WFCRQC 200
>AT3G14740.1 | Symbols: | PHD finger family protein |
chr3:4952192-4953313 REVERSE
Length = 341
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 45/82 (54%), Gaps = 9/82 (10%)
Query: 463 QNLDSLCAEGKFPESLFDSEGEIDSED-IFCSICQTKELSTDNDIILCDGACDRGFHQHC 521
+N+D L +GK +L S+ E++ ED I C++CQ+ + N I+ CDG CD H C
Sbjct: 127 ENIDPL-GKGK---ALDLSDREVEDEDGIMCAVCQSTDGDPLNPIVFCDG-CDLMVHASC 181
Query: 522 LDPPLLTEDIPPGDEGWLCPGC 543
PL+ IP GD W C C
Sbjct: 182 YGNPLVKA-IPEGD--WFCRQC 200
>AT1G05380.2 | Symbols: | similar to PHD finger transcription
factor, putative [Arabidopsis thaliana]
(TAIR:AT4G14920.1); similar to unnamed protein product
[Vitis vinifera] (GB:CAO71166.1); contains InterPro
domain Acyl-CoA N-acyltransferase (InterPro:IPR016181);
contains InterPro domain Zinc finger, RING/FYVE/PHD-type
(InterPro:IPR013083); contains InterPro domain Zinc
finger, PHD-type; (InterPro:IPR001965); contains
InterPro domain Zinc finger, FYVE/PHD-type;
(InterPro:IPR011011) | chr1:1577230-1582189 FORWARD
Length = 1138
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 12/55 (21%)
Query: 492 CSICQTKELSTDNDIILCDGACDRGFHQHCLDPPLLTEDIPPGDEGWLCPGCDCK 546
C IC D+I CDG C +HQ+CL +L P GD W CP C CK
Sbjct: 628 CGIC-----GDGGDLICCDG-CPSTYHQNCLGMQVL----PSGD--WHCPNCTCK 670
>AT1G05380.1 | Symbols: | DNA binding | chr1:1577230-1582189
FORWARD
Length = 1138
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 12/55 (21%)
Query: 492 CSICQTKELSTDNDIILCDGACDRGFHQHCLDPPLLTEDIPPGDEGWLCPGCDCK 546
C IC D+I CDG C +HQ+CL +L P GD W CP C CK
Sbjct: 628 CGIC-----GDGGDLICCDG-CPSTYHQNCLGMQVL----PSGD--WHCPNCTCK 670
>AT4G14700.1 | Symbols: ATORC1A, ORC1A | ATORC1A/ORC1A (ORIGIN OF
REPLICATION COMPLEX 1A); DNA binding |
chr4:8422231-8424660 FORWARD
Length = 809
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 7/55 (12%)
Query: 492 CSICQTKELSTDNDIILCDGACDRGFHQHCLDPPLLTEDIPPGDEGWLCPGCDCK 546
C IC T+ +I CD C GFH +CL PPL +++P GD W+C C+ K
Sbjct: 166 CQICFKSH--TNTIMIECDD-CLGGFHLNCLKPPL--KEVPEGD--WICQFCEVK 213