Miyakogusa Predicted Gene

chr5.CM0200.210.nd
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr5.CM0200.210.nd + phase: 0 /partial
         (139 letters)

Database: TAIR8_pep 
           32,825 sequences; 13,166,001 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G44910.1 | Symbols:  | protein binding | chr1:16978370-169852...   142   5e-35
AT1G44910.2 | Symbols:  | similar to FF domain-containing protei...   142   6e-35
AT3G19670.1 | Symbols:  | FF domain-containing protein / WW doma...    92   7e-20

>AT1G44910.1 | Symbols:  | protein binding | chr1:16978370-16985258
           FORWARD
          Length = 958

 Score =  142 bits (359), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 71/139 (51%), Positives = 104/139 (74%)

Query: 1   YHEEKSRVKDALKLAKITLLSTWTFEDFQSALSKDISSPPKSEFNLKLVFDELQXXXXXX 60
           YHE+KS VKDA+K  KI+++S+W FEDF+SA+S+D+S+   S+ NLKL++D+L       
Sbjct: 679 YHEDKSYVKDAMKSRKISMVSSWLFEDFKSAISEDLSTQQISDINLKLIYDDLVGRVKEK 738

Query: 61  XXXXXXXXXXLADDFFHILYSTKDITASSKWEDSRPLVEDSQEFRSIGDESLCKDIFEEY 120
                     LA++F ++L++ K+IT +S WEDS+ LVE+SQE+RSIGDES+ + +FEEY
Sbjct: 739 EEKEARKLQRLAEEFTNLLHTFKEITVASNWEDSKQLVEESQEYRSIGDESVSQGLFEEY 798

Query: 121 ITKLKEEAKEIDRKRKEER 139
           IT L+E+AKE +RKR EE+
Sbjct: 799 ITSLQEKAKEKERKRDEEK 817


>AT1G44910.2 | Symbols:  | similar to FF domain-containing protein /
           WW domain-containing protein [Arabidopsis thaliana]
           (TAIR:AT3G19670.1); similar to unnamed protein product
           [Vitis vinifera] (GB:CAO61506.1); contains InterPro
           domain FF (InterPro:IPR002713); contains InterPro domain
           WW/Rsp5/WWP; (InterPro:IPR001202) |
           chr1:16978370-16985087 FORWARD
          Length = 926

 Score =  142 bits (359), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 71/139 (51%), Positives = 104/139 (74%)

Query: 1   YHEEKSRVKDALKLAKITLLSTWTFEDFQSALSKDISSPPKSEFNLKLVFDELQXXXXXX 60
           YHE+KS VKDA+K  KI+++S+W FEDF+SA+S+D+S+   S+ NLKL++D+L       
Sbjct: 679 YHEDKSYVKDAMKSRKISMVSSWLFEDFKSAISEDLSTQQISDINLKLIYDDLVGRVKEK 738

Query: 61  XXXXXXXXXXLADDFFHILYSTKDITASSKWEDSRPLVEDSQEFRSIGDESLCKDIFEEY 120
                     LA++F ++L++ K+IT +S WEDS+ LVE+SQE+RSIGDES+ + +FEEY
Sbjct: 739 EEKEARKLQRLAEEFTNLLHTFKEITVASNWEDSKQLVEESQEYRSIGDESVSQGLFEEY 798

Query: 121 ITKLKEEAKEIDRKRKEER 139
           IT L+E+AKE +RKR EE+
Sbjct: 799 ITSLQEKAKEKERKRDEEK 817


>AT3G19670.1 | Symbols:  | FF domain-containing protein / WW
           domain-containing protein | chr3:6828248-6836588 REVERSE
          Length = 960

 Score = 92.4 bits (228), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 54/135 (40%), Positives = 80/135 (59%)

Query: 2   HEEKSRVKDALKLAKITLLSTWTFEDFQSALSKDISSPPKSEFNLKLVFDELQXXXXXXX 61
           HE KS++KD LKL K+ L +  TF++F+ ++S+DI  P   +  LKLVFD+L        
Sbjct: 694 HELKSQIKDVLKLRKVNLSAGSTFDEFKVSISEDIGFPLIPDVRLKLVFDDLLERAKEKE 753

Query: 62  XXXXXXXXXLADDFFHILYSTKDITASSKWEDSRPLVEDSQEFRSIGDESLCKDIFEEYI 121
                      +    +L S KDITASS WE+ + LVE S++  +IGDES  K  FE+Y+
Sbjct: 754 EKEARKQTRQTEKLVDMLRSFKDITASSSWEELKHLVEGSEKCSTIGDESFRKRCFEDYV 813

Query: 122 TKLKEEAKEIDRKRK 136
           + LKE++  I + +K
Sbjct: 814 SLLKEQSNRIKQNKK 828