Miyakogusa Predicted Gene

chr5.CM0062.40.nd

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr5.CM0062.40.nd - phase: 0 /partial
         (136 letters)

Database: TAIR8_pep 
           32,825 sequences; 13,166,001 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G05030.1 | Symbols: ATNHX2, NHX2 | NHX2 (sodium proton exchan...   131   1e-31
AT3G05030.2 | Symbols: ATNHX2, NHX2 | NHX2 (sodium proton exchan...   131   1e-31
AT5G27150.1 | Symbols: ATNHX, AT-NHX1, ATNHX1, NHX1 | NHX1 (NA+/...   127   1e-30
AT5G55470.1 | Symbols: NHX3, ATNHX3 | ATNHX3 (Arabidopsis thalia...    71   2e-13

>AT3G05030.1 | Symbols: ATNHX2, NHX2 | NHX2 (sodium proton exchanger
           2); sodium:hydrogen antiporter | chr3:1393462-1396790
           REVERSE
          Length = 546

 Score =  131 bits (330), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 74/135 (54%), Positives = 87/135 (64%), Gaps = 5/135 (3%)

Query: 2   SGHTSLRSNAIMXXXXXXXXXXXXXXFGMLTKPLIRLLLPH--TDTKTDSMASLDPSTPK 59
           SGHT LR NAIM              FGMLTKPLIR L+PH    T T SM S D STPK
Sbjct: 407 SGHTELRGNAIMITSTITVCLFSTMVFGMLTKPLIRYLMPHQKATTSTTSMLS-DDSTPK 465

Query: 60  SFTVPLL-GSAQDSVGDFDAHE-IRRPSSIRALLSTPTHTVHRLWRKFDNSFMRPVFGGR 117
           S  +PLL G   DS     +H+ + RP+S+R  L  PT TVH  WR+FD++FMRPVFGGR
Sbjct: 466 SIHIPLLDGEQLDSFELPGSHQDVPRPNSLRGFLMRPTRTVHYYWRQFDDAFMRPVFGGR 525

Query: 118 GFVPVEPGSPSDRSN 132
           GFVP  PGSP++RS+
Sbjct: 526 GFVPFVPGSPTERSS 540


>AT3G05030.2 | Symbols: ATNHX2, NHX2 | NHX2 (sodium proton exchanger
           2) | chr3:1393462-1395759 REVERSE
          Length = 421

 Score =  131 bits (329), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 74/135 (54%), Positives = 87/135 (64%), Gaps = 5/135 (3%)

Query: 2   SGHTSLRSNAIMXXXXXXXXXXXXXXFGMLTKPLIRLLLPH--TDTKTDSMASLDPSTPK 59
           SGHT LR NAIM              FGMLTKPLIR L+PH    T T SM S D STPK
Sbjct: 282 SGHTELRGNAIMITSTITVCLFSTMVFGMLTKPLIRYLMPHQKATTSTTSMLS-DDSTPK 340

Query: 60  SFTVPLL-GSAQDSVGDFDAHE-IRRPSSIRALLSTPTHTVHRLWRKFDNSFMRPVFGGR 117
           S  +PLL G   DS     +H+ + RP+S+R  L  PT TVH  WR+FD++FMRPVFGGR
Sbjct: 341 SIHIPLLDGEQLDSFELPGSHQDVPRPNSLRGFLMRPTRTVHYYWRQFDDAFMRPVFGGR 400

Query: 118 GFVPVEPGSPSDRSN 132
           GFVP  PGSP++RS+
Sbjct: 401 GFVPFVPGSPTERSS 415


>AT5G27150.1 | Symbols: ATNHX, AT-NHX1, ATNHX1, NHX1 | NHX1 (NA+/H+
           EXCHANGER); sodium ion transmembrane transporter/
           sodium:hydrogen antiporter | chr5:9554254-9557269
           FORWARD
          Length = 538

 Score =  127 bits (320), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 68/131 (51%), Positives = 83/131 (63%), Gaps = 5/131 (3%)

Query: 2   SGHTSLRSNAIMXXXXXXXXXXXXXXFGMLTKPLIRLLLPHTDTKTDSMASLDPSTPKSF 61
           +GHT +R NAIM              FGMLTKPLI  LLPH +  T  ++  D +TPKS 
Sbjct: 405 AGHTDVRGNAIMITSTITVCLFSTVVFGMLTKPLISYLLPHQNATTSMLS--DDNTPKSI 462

Query: 62  TVPLLGSAQDSVGD-FDAHEIRRPSSIRALLSTPTHTVHRLWRKFDNSFMRPVFGGRGFV 120
            +PLL   QDS  +    H + RP SIR  L+ PT TVH  WR+FD+SFMRPVFGGRGFV
Sbjct: 463 HIPLLD--QDSFIEPSGNHNVPRPDSIRGFLTRPTRTVHYYWRQFDDSFMRPVFGGRGFV 520

Query: 121 PVEPGSPSDRS 131
           P  PGSP++R+
Sbjct: 521 PFVPGSPTERN 531


>AT5G55470.1 | Symbols: NHX3, ATNHX3 | ATNHX3 (Arabidopsis thaliana
           Na+/H+ exchanger 3); sodium:hydrogen antiporter |
           chr5:22486779-22489811 REVERSE
          Length = 529

 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 57/110 (51%), Gaps = 7/110 (6%)

Query: 10  NAIMXXXXXXXXXXXXXXFGMLTKPLIRLLLPH--TDTKTDSMASLDPSTPKS-FTVPLL 66
           NA M              FG LTKPL+  LLP   +    +     +P +PK   T+PLL
Sbjct: 415 NAAMVTNTTIVVLFTTLVFGFLTKPLVNYLLPQDASHNTGNRGKRTEPGSPKEDATLPLL 474

Query: 67  GSAQDSVGDFDAHEIRRPSSIRALLSTPTHTVHRLWRKFDNSFMRPVFGG 116
              + +  +F+    R   SI  L+  P +T+HR WRKFD+++MRP+FGG
Sbjct: 475 SFDESASTNFN----RAKDSISLLMEQPVYTIHRYWRKFDDTYMRPIFGG 520