Miyakogusa Predicted Gene
- chr5.CM0052.230.nd
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr5.CM0052.230.nd + phase: 0
(441 letters)
Database: TAIR8_pep
32,825 sequences; 13,166,001 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G43190.2 | Symbols: | polypyrimidine tract-binding protein, ... 741 0.0
AT1G43190.1 | Symbols: | polypyrimidine tract-binding protein, ... 741 0.0
AT1G43190.3 | Symbols: | polypyrimidine tract-binding protein, ... 732 0.0
AT3G01150.1 | Symbols: PTB | PTB (POLYPYRIMIDINE TRACT-BINDING);... 161 6e-40
AT5G53180.1 | Symbols: | polypyrimidine tract-binding protein, ... 144 2e-34
AT3G01150.2 | Symbols: PTB | PTB (POLYPYRIMIDINE TRACT-BINDING) ... 121 1e-27
AT5G53180.2 | Symbols: | polypyrimidine tract-binding protein, ... 103 2e-22
AT2G42890.3 | Symbols: AML2 | AML2 | chr2:17857709-17861282 FORWARD 54 2e-07
AT2G42890.2 | Symbols: AML2 | AML2; RNA binding | chr2:17857709-... 54 2e-07
AT2G42890.1 | Symbols: AML2 | AML2; RNA binding | chr2:17857154-... 54 2e-07
AT4G00830.2 | Symbols: | RNA recognition motif (RRM)-containing... 47 3e-05
AT4G00830.1 | Symbols: | RNA recognition motif (RRM)-containing... 47 3e-05
AT3G16380.1 | Symbols: PAB6 | PAB6 (POLY(A) BINDING PROTEIN 6); ... 45 1e-04
AT3G14100.1 | Symbols: | oligouridylate-binding protein, putati... 45 1e-04
AT1G54080.2 | Symbols: UBP1A | UBP1A; mRNA 3'-UTR binding | chr1... 43 3e-04
AT1G54080.1 | Symbols: UBP1A | UBP1A; mRNA 3'-UTR binding | chr1... 43 4e-04
>AT1G43190.2 | Symbols: | polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative | chr1:16277872-16280625 REVERSE
Length = 432
Score = 741 bits (1914), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/442 (81%), Positives = 394/442 (89%), Gaps = 11/442 (2%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMDDVSSAVTAIQF 60
M E SKV+HVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQM DVSSAV+A+QF
Sbjct: 1 MAESSKVVHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVSSAVSALQF 60
Query: 61 YANMQPSIRGRNVYVQFSSHQELTTVDQS-QGRGDEPNRILLVTIHHMLYPMTVDVLYQV 119
+ N+QP+IRGRNVYVQFSSHQELTT++Q+ GR DEPNRILLVTIHHMLYP+TVDVL+QV
Sbjct: 61 FTNVQPTIRGRNVYVQFSSHQELTTIEQNIHGREDEPNRILLVTIHHMLYPITVDVLHQV 120
Query: 120 FSPHGSVEKIVTFQKSAGFQALIQYQSRQSAVTARSALQGRNIYDGCCQLDIQFSNLDEL 179
FSP+G VEK+VTFQKSAGFQALIQYQ +Q A +AR+ALQGRNIYDGCCQLDIQFSNL+EL
Sbjct: 121 FSPYGFVEKLVTFQKSAGFQALIQYQVQQCAASARTALQGRNIYDGCCQLDIQFSNLEEL 180
Query: 180 QVNYNNDRSRDFTNPNLPTEQKGRPSQPGYGDGGNMYPAQGSGARGGGIMGNASAIAAAF 239
QVNYNNDRSRD+TNPNLP EQKGR S P YGD G YP M N SAIAAAF
Sbjct: 181 QVNYNNDRSRDYTNPNLPAEQKGRSSHPCYGDTGVAYPQ----------MANTSAIAAAF 230
Query: 240 GGGLPPGITGTNDRCTILVSNLNPDRVDEDKLFNLFSIYGNIVRIKLLRNKPDHALIQMG 299
GGGLPPGITGTNDRCT+LVSNLN D +DEDKLFNLFS+YGNIVRIKLLRNKPDHAL+QMG
Sbjct: 231 GGGLPPGITGTNDRCTVLVSNLNADSIDEDKLFNLFSLYGNIVRIKLLRNKPDHALVQMG 290
Query: 300 DGFQAELAVHFLKGAILFGKPLEVNFSKHATITQGADTHEYSNSNLNRFNRNAAKNYRYC 359
DGFQAELAVHFLKGA+LFGK LEVNFSKH IT G D+H+Y NSNLNRFNRNAAKNYRYC
Sbjct: 291 DGFQAELAVHFLKGAMLFGKRLEVNFSKHPNITPGTDSHDYVNSNLNRFNRNAAKNYRYC 350
Query: 360 CSPTRMIHLSTLPQDVTEEEIASLVEEHGTIVNCKVFEMNQKKQALVQFETEEQATEALV 419
CSPT+MIHLSTLPQDVTEEE+ + V+EHG +VN KVFEMN KKQALVQFE EE+A EALV
Sbjct: 351 CSPTKMIHLSTLPQDVTEEEVMNHVQEHGAVVNTKVFEMNGKKQALVQFENEEEAAEALV 410
Query: 420 CKHATSLSGSVIRISFSQLQNI 441
CKHATSL GS+IRISFSQLQ I
Sbjct: 411 CKHATSLGGSIIRISFSQLQTI 432
>AT1G43190.1 | Symbols: | polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative | chr1:16277872-16280625 REVERSE
Length = 432
Score = 741 bits (1914), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/442 (81%), Positives = 394/442 (89%), Gaps = 11/442 (2%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMDDVSSAVTAIQF 60
M E SKV+HVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQM DVSSAV+A+QF
Sbjct: 1 MAESSKVVHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVSSAVSALQF 60
Query: 61 YANMQPSIRGRNVYVQFSSHQELTTVDQS-QGRGDEPNRILLVTIHHMLYPMTVDVLYQV 119
+ N+QP+IRGRNVYVQFSSHQELTT++Q+ GR DEPNRILLVTIHHMLYP+TVDVL+QV
Sbjct: 61 FTNVQPTIRGRNVYVQFSSHQELTTIEQNIHGREDEPNRILLVTIHHMLYPITVDVLHQV 120
Query: 120 FSPHGSVEKIVTFQKSAGFQALIQYQSRQSAVTARSALQGRNIYDGCCQLDIQFSNLDEL 179
FSP+G VEK+VTFQKSAGFQALIQYQ +Q A +AR+ALQGRNIYDGCCQLDIQFSNL+EL
Sbjct: 121 FSPYGFVEKLVTFQKSAGFQALIQYQVQQCAASARTALQGRNIYDGCCQLDIQFSNLEEL 180
Query: 180 QVNYNNDRSRDFTNPNLPTEQKGRPSQPGYGDGGNMYPAQGSGARGGGIMGNASAIAAAF 239
QVNYNNDRSRD+TNPNLP EQKGR S P YGD G YP M N SAIAAAF
Sbjct: 181 QVNYNNDRSRDYTNPNLPAEQKGRSSHPCYGDTGVAYPQ----------MANTSAIAAAF 230
Query: 240 GGGLPPGITGTNDRCTILVSNLNPDRVDEDKLFNLFSIYGNIVRIKLLRNKPDHALIQMG 299
GGGLPPGITGTNDRCT+LVSNLN D +DEDKLFNLFS+YGNIVRIKLLRNKPDHAL+QMG
Sbjct: 231 GGGLPPGITGTNDRCTVLVSNLNADSIDEDKLFNLFSLYGNIVRIKLLRNKPDHALVQMG 290
Query: 300 DGFQAELAVHFLKGAILFGKPLEVNFSKHATITQGADTHEYSNSNLNRFNRNAAKNYRYC 359
DGFQAELAVHFLKGA+LFGK LEVNFSKH IT G D+H+Y NSNLNRFNRNAAKNYRYC
Sbjct: 291 DGFQAELAVHFLKGAMLFGKRLEVNFSKHPNITPGTDSHDYVNSNLNRFNRNAAKNYRYC 350
Query: 360 CSPTRMIHLSTLPQDVTEEEIASLVEEHGTIVNCKVFEMNQKKQALVQFETEEQATEALV 419
CSPT+MIHLSTLPQDVTEEE+ + V+EHG +VN KVFEMN KKQALVQFE EE+A EALV
Sbjct: 351 CSPTKMIHLSTLPQDVTEEEVMNHVQEHGAVVNTKVFEMNGKKQALVQFENEEEAAEALV 410
Query: 420 CKHATSLSGSVIRISFSQLQNI 441
CKHATSL GS+IRISFSQLQ I
Sbjct: 411 CKHATSLGGSIIRISFSQLQTI 432
>AT1G43190.3 | Symbols: | polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative | chr1:16277872-16280625 REVERSE
Length = 430
Score = 732 bits (1890), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/442 (81%), Positives = 392/442 (88%), Gaps = 13/442 (2%)
Query: 1 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMDDVSSAVTAIQF 60
M E SKV+HVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQM DVSSAV+A+QF
Sbjct: 1 MAESSKVVHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVSSAVSALQF 60
Query: 61 YANMQPSIRGRNVYVQFSSHQELTTVDQS-QGRGDEPNRILLVTIHHMLYPMTVDVLYQV 119
+ N+QP+IR NVYVQFSSHQELTT++Q+ GR DEPNRILLVTIHHMLYP+TVDVL+QV
Sbjct: 61 FTNVQPTIR--NVYVQFSSHQELTTIEQNIHGREDEPNRILLVTIHHMLYPITVDVLHQV 118
Query: 120 FSPHGSVEKIVTFQKSAGFQALIQYQSRQSAVTARSALQGRNIYDGCCQLDIQFSNLDEL 179
FSP+G VEK+VTFQKSAGFQALIQYQ +Q A +AR+ALQGRNIYDGCCQLDIQFSNL+EL
Sbjct: 119 FSPYGFVEKLVTFQKSAGFQALIQYQVQQCAASARTALQGRNIYDGCCQLDIQFSNLEEL 178
Query: 180 QVNYNNDRSRDFTNPNLPTEQKGRPSQPGYGDGGNMYPAQGSGARGGGIMGNASAIAAAF 239
QVNYNNDRSRD+TNPNLP EQKGR S P YGD G YP M N SAIAAAF
Sbjct: 179 QVNYNNDRSRDYTNPNLPAEQKGRSSHPCYGDTGVAYPQ----------MANTSAIAAAF 228
Query: 240 GGGLPPGITGTNDRCTILVSNLNPDRVDEDKLFNLFSIYGNIVRIKLLRNKPDHALIQMG 299
GGGLPPGITGTNDRCT+LVSNLN D +DEDKLFNLFS+YGNIVRIKLLRNKPDHAL+QMG
Sbjct: 229 GGGLPPGITGTNDRCTVLVSNLNADSIDEDKLFNLFSLYGNIVRIKLLRNKPDHALVQMG 288
Query: 300 DGFQAELAVHFLKGAILFGKPLEVNFSKHATITQGADTHEYSNSNLNRFNRNAAKNYRYC 359
DGFQAELAVHFLKGA+LFGK LEVNFSKH IT G D+H+Y NSNLNRFNRNAAKNYRYC
Sbjct: 289 DGFQAELAVHFLKGAMLFGKRLEVNFSKHPNITPGTDSHDYVNSNLNRFNRNAAKNYRYC 348
Query: 360 CSPTRMIHLSTLPQDVTEEEIASLVEEHGTIVNCKVFEMNQKKQALVQFETEEQATEALV 419
CSPT+MIHLSTLPQDVTEEE+ + V+EHG +VN KVFEMN KKQALVQFE EE+A EALV
Sbjct: 349 CSPTKMIHLSTLPQDVTEEEVMNHVQEHGAVVNTKVFEMNGKKQALVQFENEEEAAEALV 408
Query: 420 CKHATSLSGSVIRISFSQLQNI 441
CKHATSL GS+IRISFSQLQ I
Sbjct: 409 CKHATSLGGSIIRISFSQLQTI 430
>AT3G01150.1 | Symbols: PTB | PTB (POLYPYRIMIDINE TRACT-BINDING);
RNA binding | chr3:51739-54351 FORWARD
Length = 399
Score = 161 bits (408), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 113/344 (32%), Positives = 182/344 (52%), Gaps = 49/344 (14%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMDDVSSAVTAIQFY 61
PSKV+H+RN+ E E +L+ L + FG I TK + +NQA ++ D++ A++ + +Y
Sbjct: 15 PSKVVHLRNLPWECVEEELIDLCKRFGKIVNTKSNVGANRNQAFVEFADLNQAISMVSYY 74
Query: 62 ANM-QPS-IRGRNVYVQFSSHQELTTVDQSQGRGDEPNRILLVTIHHM-LYPMTVDVLYQ 118
A+ +P+ IRG+ VY+Q+S+ E+ +Q GD P +LLVT + + +++DV++
Sbjct: 75 ASSSEPAQIRGKTVYIQYSNRHEIVN---NQSPGDVPGNVLLVTFEGVESHEVSIDVIHL 131
Query: 119 VFSPHGSVEKIVTFQKSAGFQALIQYQSRQSAVTARSALQGRNI-------YDGCCQLDI 171
VFS G V KI TF+K+AGFQAL+Q+ ++A ARSAL GR+I + G C L +
Sbjct: 132 VFSAFGFVHKIATFEKAAGFQALVQFTDVETASAARSALDGRSIPRYLLSAHVGSCSLRM 191
Query: 172 QFSNLDELQVNYNNDRSRDFTNPNLPTEQKGRPSQPGYGDGGNMYPAQGSGARGGGIMGN 231
+S +L + + + RSRD+TNP LP Q G+M PA GA G +
Sbjct: 192 SYSAHTDLNIKFQSHRSRDYTNPYLPVNQTAM--------DGSMQPAL--GADGKKVESQ 241
Query: 232 ASAIAAAFGGGLPPGITGTNDRCTILVSNLNPDRVDEDKLFNLFSIYGNIVRIKLL-RNK 290
++ + L+ N+ V D L +FS YG + +I + +N
Sbjct: 242 SNVLLG-------------------LIENMQ-YAVTVDVLHTVFSAYGTVQKIAIFEKNG 281
Query: 291 PDHALIQMGDGFQAELAVHFLKGAILFGK---PLEVNFSKHATI 331
ALIQ D A +A L+G ++ L +++S+H +
Sbjct: 282 STQALIQYSDIPTAAMAKEALEGHCIYDGGYCKLRLSYSRHTDL 325
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 87/282 (30%), Positives = 126/282 (44%), Gaps = 58/282 (20%)
Query: 15 HEISENDLLQLFQPFGVITKLVMLR--AKNQALLQMDDVSSAVTAIQFYANMQPSIRGRN 72
HE+S + + +F FG + K+ A QAL+Q DV +A A + ++ GR+
Sbjct: 122 HEVSIDVIHLVFSAFGFVHKIATFEKAAGFQALVQFTDVETASAA-------RSALDGRS 174
Query: 73 V--------------YVQFSSHQELTTVDQSQGRGDEPN--------------------- 97
+ + +S+H +L QS D N
Sbjct: 175 IPRYLLSAHVGSCSLRMSYSAHTDLNIKFQSHRSRDYTNPYLPVNQTAMDGSMQPALGAD 234
Query: 98 --------RILLVTIHHMLYPMTVDVLYQVFSPHGSVEKIVTFQKSAGFQALIQYQSRQS 149
+LL I +M Y +TVDVL+ VFS +G+V+KI F+K+ QALIQY +
Sbjct: 235 GKKVESQSNVLLGLIENMQYAVTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQYSDIPT 294
Query: 150 AVTARSALQGRNIYD-GCCQLDIQFSNLDELQVNYNNDRSRDFTNPNLP--TEQKGRP-- 204
A A+ AL+G IYD G C+L + +S +L V +D+SRD+T P+L QKG
Sbjct: 295 AAMAKEALEGHCIYDGGYCKLRLSYSRHTDLNVKAFSDKSRDYTLPDLSLLVAQKGPAVS 354
Query: 205 -SQPGYGDGGNMYPAQGSGARGGGIMGNASAIAAAFGGGLPP 245
S P G +Q SG G M +S A G PP
Sbjct: 355 GSAPPAGWQNPQAQSQYSGYGGSPYMYPSSDPNGASPSGQPP 396
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 356 YRYCCSPTRMIHLSTLPQDVTEEEIASLVEEHGTIVNCKVFEMNQKKQALVQFETEEQAT 415
+RY +P++++HL LP + EEE+ L + G IVN K + QA V+F QA
Sbjct: 9 FRYTQTPSKVVHLRNLPWECVEEELIDLCKRFGKIVNTKSNVGANRNQAFVEFADLNQAI 68
Query: 416 EALVCKHATS-----LSGSVIRISFSQLQNI 441
++V +A+S + G + I +S I
Sbjct: 69 -SMVSYYASSSEPAQIRGKTVYIQYSNRHEI 98
>AT5G53180.1 | Symbols: | polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative | chr5:21585619-21588763 REVERSE
Length = 429
Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 109/350 (31%), Positives = 178/350 (50%), Gaps = 59/350 (16%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMDDVSSAVTAIQFY 61
PSKV+H+RN+ E +E +L++L +PFG + TK + +NQA ++ +D++ A+ I +Y
Sbjct: 16 PSKVLHLRNLPWECTEEELIELGKPFGTVVNTKCNVGANRNQAFIEFEDLNQAIQMISYY 75
Query: 62 ANM-QPS-IRGRNVYVQFSSHQELTTVDQSQGRGDEPNRILLVTIHHMLYPM-TVDVLYQ 118
A+ +P+ +RG+ VY+Q+S+ QE+ ++ D +LLVTI M ++DVL+
Sbjct: 76 ASSSEPAQVRGKTVYLQYSNRQEIVN---NKTTADVVGNVLLVTIEGDDARMVSIDVLHL 132
Query: 119 VFSPHGSVEKIVTFQKSAGFQALIQYQSRQSAVTARSALQGRNIYD-------GCCQLDI 171
VFS G V KI TF+K+AG+QAL+Q+ ++A A+ AL GR+I G C L I
Sbjct: 133 VFSAFGFVHKITTFEKTAGYQALVQFTDAETATAAKLALDGRSIPRYLLAETVGQCSLKI 192
Query: 172 QFSNLDELQVNYNNDRSRDFTNPNLPTEQKGRPS--QPGYG-DGGNMYPAQGSGARGGGI 228
+S +L V + + RSRD+TNP LP S Q G DG M P
Sbjct: 193 TYSAHTDLTVKFQSHRSRDYTNPYLPVAPSAIDSTGQVAVGVDGKKMEP----------- 241
Query: 229 MGNASAIAAAFGGGLPPGITGTNDRCTILVSNLNPDR--VDEDKLFNLFSIYGNIVRIKL 286
+L++++ + V D L +F+ +G + +I +
Sbjct: 242 ------------------------ESNVLLASIENMQYAVTLDVLHMVFAAFGEVQKIAM 277
Query: 287 L-RNKPDHALIQMGDGFQAELAVHFLKGAILFGK---PLEVNFSKHATIT 332
+N ALIQ D A +A L+G ++ L + +S+H ++
Sbjct: 278 FDKNGGVQALIQYSDVQTAVVAKEALEGHCIYDGGFCKLHITYSRHTDLS 327
Score = 105 bits (261), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 74/213 (34%), Positives = 107/213 (50%), Gaps = 42/213 (19%)
Query: 21 DLLQL-FQPFGVITKLVMLR--AKNQALLQMDDVSSAVTA--------IQFYANMQPSIR 69
D+L L F FG + K+ A QAL+Q D +A A I Y + ++
Sbjct: 128 DVLHLVFSAFGFVHKITTFEKTAGYQALVQFTDAETATAAKLALDGRSIPRYL-LAETVG 186
Query: 70 GRNVYVQFSSHQELTTVDQSQ----------------------------GRGDEP-NRIL 100
++ + +S+H +LT QS G+ EP + +L
Sbjct: 187 QCSLKITYSAHTDLTVKFQSHRSRDYTNPYLPVAPSAIDSTGQVAVGVDGKKMEPESNVL 246
Query: 101 LVTIHHMLYPMTVDVLYQVFSPHGSVEKIVTFQKSAGFQALIQYQSRQSAVTARSALQGR 160
L +I +M Y +T+DVL+ VF+ G V+KI F K+ G QALIQY Q+AV A+ AL+G
Sbjct: 247 LASIENMQYAVTLDVLHMVFAAFGEVQKIAMFDKNGGVQALIQYSDVQTAVVAKEALEGH 306
Query: 161 NIYD-GCCQLDIQFSNLDELQVNYNNDRSRDFT 192
IYD G C+L I +S +L + NNDRSRD+T
Sbjct: 307 CIYDGGFCKLHITYSRHTDLSIKVNNDRSRDYT 339
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 6/91 (6%)
Query: 356 YRYCCSPTRMIHLSTLPQDVTEEEIASLVEEHGTIVNCKVFEMNQKKQALVQFETEEQAT 415
+RY P++++HL LP + TEEE+ L + GT+VN K + QA ++FE QA
Sbjct: 10 FRYTQPPSKVLHLRNLPWECTEEELIELGKPFGTVVNTKCNVGANRNQAFIEFEDLNQAI 69
Query: 416 EALVCKHATS-----LSGSVIRISFSQLQNI 441
+ ++ +A+S + G + + +S Q I
Sbjct: 70 Q-MISYYASSSEPAQVRGKTVYLQYSNRQEI 99
>AT3G01150.2 | Symbols: PTB | PTB (POLYPYRIMIDINE TRACT-BINDING) |
chr3:51739-54351 FORWARD
Length = 370
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 98/343 (28%), Positives = 160/343 (46%), Gaps = 76/343 (22%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMDDVSSAVTAIQFY 61
PSKV+H+RN+ E E +L+ L + FG I TK + +NQA ++ D++ A++ + +Y
Sbjct: 15 PSKVVHLRNLPWECVEEELIDLCKRFGKIVNTKSNVGANRNQAFVEFADLNQAISMVSYY 74
Query: 62 A-NMQPS-IRGRNVYVQFSSHQELTTVDQSQGRGDEPNRILLVTIHHMLYPMTVDVLYQV 119
A + +P+ IRG+ VY+Q+S+ E+ +Q GD P +LL
Sbjct: 75 ASSSEPAQIRGKTVYIQYSNRHEIVN---NQSPGDVPGNVLL------------------ 113
Query: 120 FSPHGSVEKIVTFQKSAGFQALIQYQSRQSAVTARSALQGRNI-------YDGCCQLDIQ 172
VTF+ +AL+Q+ ++A ARSAL GR+I + G C L +
Sbjct: 114 ----------VTFEGVESHEALVQFTDVETASAARSALDGRSIPRYLLSAHVGSCSLRMS 163
Query: 173 FSNLDELQVNYNNDRSRDFTNPNLPTEQKGRPSQPGYGDGGNMYPAQGSGARGGGIMGNA 232
+S +L + + + RSRD+TNP LP Q G+M PA GA G + +
Sbjct: 164 YSAHTDLNIKFQSHRSRDYTNPYLPVNQTAM--------DGSMQPAL--GADGKKVESQS 213
Query: 233 SAIAAAFGGGLPPGITGTNDRCTILVSNLNPDRVDEDKLFNLFSIYGNIVRIKLL-RNKP 291
+ + L+ N+ V D L +FS YG + +I + +N
Sbjct: 214 NVLLG-------------------LIENMQ-YAVTVDVLHTVFSAYGTVQKIAIFEKNGS 253
Query: 292 DHALIQMGDGFQAELAVHFLKGAILFGK---PLEVNFSKHATI 331
ALIQ D A +A L+G ++ L +++S+H +
Sbjct: 254 TQALIQYSDIPTAAMAKEALEGHCIYDGGYCKLRLSYSRHTDL 296
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/153 (40%), Positives = 84/153 (54%), Gaps = 6/153 (3%)
Query: 99 ILLVTIHHMLYPMTVDVLYQVFSPHGSVEKIVTFQKSAGFQALIQYQSRQSAVTARSALQ 158
+LL I +M Y +TVDVL+ VFS +G+V+KI F+K+ QALIQY +A A+ AL+
Sbjct: 215 VLLGLIENMQYAVTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQYSDIPTAAMAKEALE 274
Query: 159 GRNIYD-GCCQLDIQFSNLDELQVNYNNDRSRDFTNPNLP--TEQKGRP---SQPGYGDG 212
G IYD G C+L + +S +L V +D+SRD+T P+L QKG S P G
Sbjct: 275 GHCIYDGGYCKLRLSYSRHTDLNVKAFSDKSRDYTLPDLSLLVAQKGPAVSGSAPPAGWQ 334
Query: 213 GNMYPAQGSGARGGGIMGNASAIAAAFGGGLPP 245
+Q SG G M +S A G PP
Sbjct: 335 NPQAQSQYSGYGGSPYMYPSSDPNGASPSGQPP 367
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 356 YRYCCSPTRMIHLSTLPQDVTEEEIASLVEEHGTIVNCKVFEMNQKKQALVQFETEEQAT 415
+RY +P++++HL LP + EEE+ L + G IVN K + QA V+F QA
Sbjct: 9 FRYTQTPSKVVHLRNLPWECVEEELIDLCKRFGKIVNTKSNVGANRNQAFVEFADLNQAI 68
Query: 416 EALVCKHATS-----LSGSVIRISFSQLQNI 441
++V +A+S + G + I +S I
Sbjct: 69 -SMVSYYASSSEPAQIRGKTVYIQYSNRHEI 98
>AT5G53180.2 | Symbols: | polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative | chr5:21585619-21588307 REVERSE
Length = 329
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 104/215 (48%), Gaps = 53/215 (24%)
Query: 24 QLFQPFGVITKLVMLR--AKNQALLQMDDVSSAVTAIQFYANMQPSIRGRNV-------- 73
+F FG + K+ A QAL+Q D +A A + ++ GR++
Sbjct: 32 HVFSAFGFVHKITTFEKTAGYQALVQFTDAETATAA-------KLALDGRSIPRYLLAET 84
Query: 74 ------YVQFSSHQELTTVDQSQ----------------------------GRGDEP-NR 98
+ +S+H +LT QS G+ EP +
Sbjct: 85 VGQCSLKITYSAHTDLTVKFQSHRSRDYTNPYLPVAPSAIDSTGQVAVGVDGKKMEPESN 144
Query: 99 ILLVTIHHMLYPMTVDVLYQVFSPHGSVEKIVTFQKSAGFQALIQYQSRQSAVTARSALQ 158
+LL +I +M Y +T+DVL+ VF+ G V+KI F K+ G QALIQY Q+AV A+ AL+
Sbjct: 145 VLLASIENMQYAVTLDVLHMVFAAFGEVQKIAMFDKNGGVQALIQYSDVQTAVVAKEALE 204
Query: 159 GRNIYD-GCCQLDIQFSNLDELQVNYNNDRSRDFT 192
G IYD G C+L I +S +L + NNDRSRD+T
Sbjct: 205 GHCIYDGGFCKLHITYSRHTDLSIKVNNDRSRDYT 239
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 102/231 (44%), Gaps = 51/231 (22%)
Query: 118 QVFSPHGSVEKIVTFQKSAGFQALIQYQSRQSAVTARSALQGRNIYD-------GCCQLD 170
VFS G V KI TF+K+AG+QAL+Q+ ++A A+ AL GR+I G C L
Sbjct: 32 HVFSAFGFVHKITTFEKTAGYQALVQFTDAETATAAKLALDGRSIPRYLLAETVGQCSLK 91
Query: 171 IQFSNLDELQVNYNNDRSRDFTNPNLPTEQKGRPS--QPGYG-DGGNMYPAQGSGARGGG 227
I +S +L V + + RSRD+TNP LP S Q G DG M P
Sbjct: 92 ITYSAHTDLTVKFQSHRSRDYTNPYLPVAPSAIDSTGQVAVGVDGKKMEP---------- 141
Query: 228 IMGNASAIAAAFGGGLPPGITGTNDRCTILVSNLNPDR--VDEDKLFNLFSIYGNIVRIK 285
+L++++ + V D L +F+ +G + +I
Sbjct: 142 -------------------------ESNVLLASIENMQYAVTLDVLHMVFAAFGEVQKIA 176
Query: 286 LL-RNKPDHALIQMGDGFQAELAVHFLKGAILFGK---PLEVNFSKHATIT 332
+ +N ALIQ D A +A L+G ++ L + +S+H ++
Sbjct: 177 MFDKNGGVQALIQYSDVQTAVVAKEALEGHCIYDGGFCKLHITYSRHTDLS 227
>AT2G42890.3 | Symbols: AML2 | AML2 | chr2:17857709-17861282 FORWARD
Length = 830
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 81/170 (47%), Gaps = 14/170 (8%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKL-VMLRAKNQALLQMDDVSSAVTAIQFYA 62
PS+ + VRN+ + +++L LF+PFG I L +++ ++ D+ +A A++
Sbjct: 183 PSRTLFVRNINSSVEDSELSALFEPFGEIRSLYTACKSRGFVMISYYDIRAAHAAMRALQ 242
Query: 63 NMQPSIRGRNVYVQFSSHQE-LTTVDQSQGRGDEPNRILLVTIHHMLYPMTVDVLYQVFS 121
N +R R + + FS +E + D +QG + I ++ ++ D L Q+F
Sbjct: 243 NTL--LRKRTLDIHFSIPKENPSEKDMNQG---------TLVIFNVDTTVSNDELLQLFG 291
Query: 122 PHGSVEKIVTFQKSAGFQALIQYQSRQSAVTARSALQGRNIYDGCCQLDI 171
+G + +I + F I+Y + A TA AL I C +L++
Sbjct: 292 AYGEIREIRE-TPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLEL 340
>AT2G42890.2 | Symbols: AML2 | AML2; RNA binding |
chr2:17857709-17861282 FORWARD
Length = 830
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 81/170 (47%), Gaps = 14/170 (8%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKL-VMLRAKNQALLQMDDVSSAVTAIQFYA 62
PS+ + VRN+ + +++L LF+PFG I L +++ ++ D+ +A A++
Sbjct: 183 PSRTLFVRNINSSVEDSELSALFEPFGEIRSLYTACKSRGFVMISYYDIRAAHAAMRALQ 242
Query: 63 NMQPSIRGRNVYVQFSSHQE-LTTVDQSQGRGDEPNRILLVTIHHMLYPMTVDVLYQVFS 121
N +R R + + FS +E + D +QG + I ++ ++ D L Q+F
Sbjct: 243 NTL--LRKRTLDIHFSIPKENPSEKDMNQG---------TLVIFNVDTTVSNDELLQLFG 291
Query: 122 PHGSVEKIVTFQKSAGFQALIQYQSRQSAVTARSALQGRNIYDGCCQLDI 171
+G + +I + F I+Y + A TA AL I C +L++
Sbjct: 292 AYGEIREIRE-TPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLEL 340
>AT2G42890.1 | Symbols: AML2 | AML2; RNA binding |
chr2:17857154-17861282 FORWARD
Length = 843
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 81/170 (47%), Gaps = 14/170 (8%)
Query: 4 PSKVIHVRNVGHEISENDLLQLFQPFGVITKL-VMLRAKNQALLQMDDVSSAVTAIQFYA 62
PS+ + VRN+ + +++L LF+PFG I L +++ ++ D+ +A A++
Sbjct: 196 PSRTLFVRNINSSVEDSELSALFEPFGEIRSLYTACKSRGFVMISYYDIRAAHAAMRALQ 255
Query: 63 NMQPSIRGRNVYVQFSSHQE-LTTVDQSQGRGDEPNRILLVTIHHMLYPMTVDVLYQVFS 121
N +R R + + FS +E + D +QG + I ++ ++ D L Q+F
Sbjct: 256 NTL--LRKRTLDIHFSIPKENPSEKDMNQG---------TLVIFNVDTTVSNDELLQLFG 304
Query: 122 PHGSVEKIVTFQKSAGFQALIQYQSRQSAVTARSALQGRNIYDGCCQLDI 171
+G + +I + F I+Y + A TA AL I C +L++
Sbjct: 305 AYGEIREIRE-TPNRRFHRFIEYYDVRDAETALKALNRSEIGGKCIKLEL 353
>AT4G00830.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:352782-354965 FORWARD
Length = 495
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 366 IHLSTLPQDVTEEEIASLVEEHGTIVNCKVFE----MNQKKQALVQFETEEQATEALVCK 421
+ + LP+DV EE++ L EE G I ++ + + K A V F+T++ A +A+
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEEL 177
Query: 422 HATSLSGSVIRISFSQLQN 440
H+ G IR S S+ +N
Sbjct: 178 HSKEFKGKTIRCSLSETKN 196
>AT4G00830.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:352782-354965 FORWARD
Length = 495
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 366 IHLSTLPQDVTEEEIASLVEEHGTIVNCKVFE----MNQKKQALVQFETEEQATEALVCK 421
+ + LP+DV EE++ L EE G I ++ + + K A V F+T++ A +A+
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEEL 177
Query: 422 HATSLSGSVIRISFSQLQN 440
H+ G IR S S+ +N
Sbjct: 178 HSKEFKGKTIRCSLSETKN 196
>AT3G16380.1 | Symbols: PAB6 | PAB6 (POLY(A) BINDING PROTEIN 6); RNA
binding / translation initiation factor |
chr3:5558682-5560999 REVERSE
Length = 537
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 78/187 (41%), Gaps = 31/187 (16%)
Query: 255 TILVSNLNPDRVDEDKLFNLFSIYGNIVRIKLLRNKPD-----HALIQMGDGFQAELAVH 309
++ V +L+PD V E L + FS+ +V + L RN +A I F A A+
Sbjct: 22 SLYVGDLSPD-VTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMT 80
Query: 310 FLKGAILFGKPLEVNFSKHATITQGADTHEYSNSNLNRFNRNAAKNYRYCCSPTRMIHLS 369
L + L GK + + +S+ + ++N +++
Sbjct: 81 RLNHSDLKGKAMRIMWSQRDLAYRRRTRTGFAN-----------------------LYVK 117
Query: 370 TLPQDVTEEEIASLVEEHGTIVNCKVFEMNQKKQ--ALVQFETEEQATEALVCKHATSLS 427
L +T + + G+I++CKV E N + + VQF+TE+ A A H + +
Sbjct: 118 NLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSARSALHGSMVY 177
Query: 428 GSVIRIS 434
G + ++
Sbjct: 178 GKKLFVA 184
>AT3G14100.1 | Symbols: | oligouridylate-binding protein, putative
| chr3:4673034-4675957 FORWARD
Length = 427
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 241 GGLPPGITGTNDRCTILVSNLNPDRVDEDKLFNLFSIYGNIVRIKLLR-NKPDHALIQMG 299
G LPPG + R ++ V N++ +V E L +F+ G + KL+R +K + +
Sbjct: 47 GNLPPGFDPSTCR-SVYVGNIH-TQVTEPLLQEIFTSTGPVESSKLIRKDKSSYGFVHYF 104
Query: 300 DGFQAELAVHFLKGAILFGKPLEVNFS 326
D A LA+ L G LFG+P++VN++
Sbjct: 105 DRRSAALAILSLNGRHLFGQPIKVNWA 131
>AT1G54080.2 | Symbols: UBP1A | UBP1A; mRNA 3'-UTR binding |
chr1:20187591-20190492 REVERSE
Length = 430
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 241 GGLPPGITGTNDRCTILVSNLNPDRVDEDKLFNLFSIYGNIVRIKLLR-NKPDHALIQMG 299
G LPPG T R ++ N++ +V E L +F+ G I KL+R +K + +
Sbjct: 51 GNLPPGFDPTTCR-SVYAGNIH-TQVTEILLQEIFASTGPIESCKLIRKDKSSYGFVHYF 108
Query: 300 DGFQAELAVHFLKGAILFGKPLEVNFS 326
D A +A+ L G +FG+P++VN++
Sbjct: 109 DRRCASMAIMTLNGRHIFGQPMKVNWA 135
>AT1G54080.1 | Symbols: UBP1A | UBP1A; mRNA 3'-UTR binding |
chr1:20187591-20190492 REVERSE
Length = 426
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 5/103 (4%)
Query: 241 GGLPPGITGTNDRCTILVSNLNPDRVDEDKLFNLFSIYGNIVRIKLLR-NKPDHALIQMG 299
G LPPG T R ++ N++ +V E L +F+ G I KL+R +K + +
Sbjct: 51 GNLPPGFDPTTCR-SVYAGNIH-TQVTEILLQEIFASTGPIESCKLIRKDKSSYGFVHYF 108
Query: 300 DGFQAELAVHFLKGAILFGKPLEVNFSKHATITQGADTHEYSN 342
D A +A+ L G +FG+P++VN++ +AT Q DT + N
Sbjct: 109 DRRCASMAIMTLNGRHIFGQPMKVNWA-YAT-GQREDTSSHFN 149