Miyakogusa Predicted Gene
- chr4.LjT32J05.120.nc
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr4.LjT32J05.120.nc + phase: 0
(293 letters)
Database: TAIR8_pep
32,825 sequences; 13,166,001 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G18810.1 | Symbols: SCL28 | SCL28 (SC35-like splicing factor ... 157 1e-38
AT3G13570.1 | Symbols: SCL30a | SCL30a (SC35-like splicing facto... 123 1e-28
AT1G55310.1 | Symbols: ATSCL33, SCL33, SR33 | SR33 (SC35-like sp... 120 1e-27
AT1G55310.2 | Symbols: ATSCL33, SCL33, SR33 | SR33 (SC35-like sp... 119 2e-27
AT3G55460.1 | Symbols: SCL30 | SCL30 (SC35-like splicing factor ... 114 5e-26
AT2G21440.1 | Symbols: | RNA recognition motif (RRM)-containing... 66 2e-11
AT5G64200.2 | Symbols: ATSC35 | ATSC35 (ARABIDOPSIS THALIANA ARG... 64 8e-11
AT5G64200.1 | Symbols: ATSC35 | ATSC35 (ARABIDOPSIS THALIANA ARG... 64 8e-11
AT1G71800.1 | Symbols: | cleavage stimulation factor, putative ... 60 2e-09
AT3G10400.1 | Symbols: | RNA recognition motif (RRM)-containing... 51 9e-07
AT3G52380.1 | Symbols: PDE322, CP33 | CP33 (PIGMENT DEFECTIVE 32... 51 1e-06
AT4G36960.1 | Symbols: | RNA recognition motif (RRM)-containing... 50 1e-06
AT3G54230.1 | Symbols: | nucleic acid binding | chr3:20084850-2... 50 2e-06
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | GR-RBP4/GRP4 (GLYCINE-RIC... 49 3e-06
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | GR-RBP4/GRP4 (GLYCINE-RIC... 49 3e-06
AT2G16940.1 | Symbols: | RNA recognition motif (RRM)-containing... 49 5e-06
AT4G20030.1 | Symbols: | RNA recognition motif (RRM)-containing... 47 1e-05
AT5G09880.1 | Symbols: | RNA recognition motif (RRM)-containing... 47 1e-05
AT1G07350.2 | Symbols: | transformer serine/arginine-rich ribon... 47 1e-05
AT4G14300.1 | Symbols: | heterogeneous nuclear ribonucleoprotei... 47 2e-05
AT4G19610.1 | Symbols: | RNA binding | chr4:10677492-10681633 F... 46 2e-05
AT2G18510.1 | Symbols: EMB2444 | EMB2444 (EMBRYO DEFECTIVE 2444)... 46 2e-05
AT3G46020.1 | Symbols: | RNA-binding protein, putative | chr3:1... 46 3e-05
AT1G01080.1 | Symbols: | 33 kDa ribonucleoprotein, chloroplast,... 46 3e-05
AT3G08000.1 | Symbols: | RNA-binding protein, putative | chr3:2... 45 4e-05
AT2G43370.1 | Symbols: | U1 small nuclear ribonucleoprotein 70 ... 45 4e-05
AT5G50250.1 | Symbols: | 31 kDa ribonucleoprotein, chloroplast,... 45 5e-05
AT3G52150.2 | Symbols: | RNA recognition motif (RRM)-containing... 45 5e-05
AT3G52150.1 | Symbols: | RNA recognition motif (RRM)-containing... 45 5e-05
AT1G49600.1 | Symbols: ATRBP47A | ATRBP47A (ARABIDOPSIS THALIANA... 45 5e-05
AT3G11400.1 | Symbols: ATEIF3G1, EIF3G1 | EIF3G1 (eukaryotic tra... 44 9e-05
AT5G61030.1 | Symbols: GR-RBP3 | GR-RBP3 (glycine-rich RNA-bindi... 44 1e-04
AT4G09040.1 | Symbols: | RNA recognition motif (RRM)-containing... 44 1e-04
AT4G09040.2 | Symbols: | RNA recognition motif (RRM)-containing... 44 1e-04
AT3G50670.1 | Symbols: U1SNRNP, U1-70K | U1-70K (SPLICEOSOMAL PR... 44 1e-04
AT4G16280.2 | Symbols: FCA | FCA; RNA binding | chr4:9207180-921... 44 2e-04
AT4G16280.3 | Symbols: FCA | FCA; RNA binding | chr4:9208580-921... 43 2e-04
AT4G34110.1 | Symbols: PABP2, PAB2 | PAB2 (POLY(A) BINDING PROTE... 43 2e-04
AT2G47310.1 | Symbols: | flowering time control protein-related... 43 2e-04
AT1G07350.1 | Symbols: | transformer serine/arginine-rich ribon... 43 2e-04
AT5G11412.1 | Symbols: | nucleic acid binding / nucleotide bind... 43 3e-04
AT1G60650.2 | Symbols: | glycine-rich RNA-binding protein, puta... 43 3e-04
AT1G60650.1 | Symbols: | glycine-rich RNA-binding protein, puta... 43 3e-04
AT5G53720.1 | Symbols: | RNA recognition motif (RRM)-containing... 43 3e-04
AT3G19130.1 | Symbols: ATRBP47B | ATRBP47B (RNA-BINDING PROTEIN ... 42 3e-04
AT2G33410.1 | Symbols: | heterogeneous nuclear ribonucleoprotei... 42 3e-04
AT4G00830.2 | Symbols: | RNA recognition motif (RRM)-containing... 42 3e-04
AT4G00830.1 | Symbols: | RNA recognition motif (RRM)-containing... 42 3e-04
AT3G52660.2 | Symbols: | RNA recognition motif (RRM)-containing... 42 4e-04
AT3G52660.1 | Symbols: | RNA recognition motif (RRM)-containing... 42 4e-04
AT1G58470.1 | Symbols: RBP1, XF41, ATRBP1 | ATRBP1 (ARABIDOPSIS ... 42 4e-04
AT1G22760.1 | Symbols: PAB3 | PAB3 (POLY(A) BINDING PROTEIN 3); ... 42 5e-04
AT4G13860.1 | Symbols: | glycine-rich RNA-binding protein, puta... 42 6e-04
AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing... 41 8e-04
AT1G71770.1 | Symbols: PAB5 | PAB5 (POLY(A)-BINDING PROTEIN); RN... 41 0.001
>AT5G18810.1 | Symbols: SCL28 | SCL28 (SC35-like splicing factor
28); RNA binding | chr5:6268927-6271160 REVERSE
Length = 236
Score = 157 bits (396), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 72/90 (80%), Positives = 80/90 (88%)
Query: 44 PSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAK 103
PSGLL+RNLPLDARP DLR FER+GP+KD+YLP+NYYTGEPRGFGFVKYR+ EDAAEA
Sbjct: 46 PSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAM 105
Query: 104 HHLNHTIIGGREIRIVFAEENRKTPQEMRV 133
+NH +IGGREI IVFAEENRKTPQEMR
Sbjct: 106 KRMNHKVIGGREIAIVFAEENRKTPQEMRT 135
>AT3G13570.1 | Symbols: SCL30a | SCL30a (SC35-like splicing factor
30a); RNA binding | chr3:4429571-4431609 REVERSE
Length = 262
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 57/91 (62%), Positives = 73/91 (80%)
Query: 43 LPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEA 102
LP+ LLVRNL D R EDLR PFE++GPVKD+YLP++YYTG+PRGFGF+++ DAAEA
Sbjct: 35 LPTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEA 94
Query: 103 KHHLNHTIIGGREIRIVFAEENRKTPQEMRV 133
KH ++ ++ GRE+ +VFAEENRK P EMR
Sbjct: 95 KHQMDGYLLLGRELTVVFAEENRKKPTEMRT 125
>AT1G55310.1 | Symbols: ATSCL33, SCL33, SR33 | SR33 (SC35-like
splicing factor 33); RNA binding |
chr1:20634343-20636161 FORWARD
Length = 220
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 56/89 (62%), Positives = 72/89 (80%)
Query: 43 LPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEA 102
LP+ LLVRNL D R EDLR FE++GPVKD+YLP++YYTG+PRGFGFV++ DAA+A
Sbjct: 34 LPTSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADA 93
Query: 103 KHHLNHTIIGGREIRIVFAEENRKTPQEM 131
KHH++ ++ GRE+ +VFAEENRK P EM
Sbjct: 94 KHHMDGYLLLGRELTVVFAEENRKKPTEM 122
>AT1G55310.2 | Symbols: ATSCL33, SCL33, SR33 | SR33 (SC35-like
splicing factor 33); RNA binding |
chr1:20634343-20636240 FORWARD
Length = 222
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/89 (62%), Positives = 72/89 (80%)
Query: 43 LPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEA 102
LP+ LLVRNL D R EDLR FE++GPVKD+YLP++YYTG+PRGFGFV++ DAA+A
Sbjct: 34 LPTSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADA 93
Query: 103 KHHLNHTIIGGREIRIVFAEENRKTPQEM 131
KHH++ ++ GRE+ +VFAEENRK P EM
Sbjct: 94 KHHMDGYLLLGRELTVVFAEENRKKPTEM 122
>AT3G55460.1 | Symbols: SCL30 | SCL30 (SC35-like splicing factor
30); RNA binding | chr3:20572001-20574479 FORWARD
Length = 262
Score = 114 bits (286), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 68/87 (78%)
Query: 47 LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
LLVRN+PLD RPE+LR PFER+GPV+DVY+P++YY+G+PRGF FV++ DA EA+ +
Sbjct: 49 LLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSM 108
Query: 107 NHTIIGGREIRIVFAEENRKTPQEMRV 133
N GREI +V A E+RK P+EMRV
Sbjct: 109 NRRSFAGREITVVVASESRKRPEEMRV 135
>AT2G21440.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:9180792-9186145 REVERSE
Length = 1003
Score = 66.2 bits (160), Expect = 2e-11, Method: Composition-based stats.
Identities = 33/75 (44%), Positives = 47/75 (62%)
Query: 47 LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
L++RNLP A+P D++ F G V DV++PKN+ TG P+GF FVK+ +DAA A
Sbjct: 333 LIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKKF 392
Query: 107 NHTIIGGREIRIVFA 121
N + G R I + +A
Sbjct: 393 NGHMFGKRPIAVDWA 407
Score = 45.1 bits (105), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 49 VRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHLNH 108
V LP L F GPV+ +L N + E RGF FVK+ ED A N
Sbjct: 24 VSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIELKNG 83
Query: 109 TIIGGREIRIVFAEENRKTPQEMR 132
+ +GGR I + A +R + QE R
Sbjct: 84 STVGGRRITVKQA-AHRPSLQERR 106
>AT5G64200.2 | Symbols: ATSC35 | ATSC35 (ARABIDOPSIS THALIANA
ARGININE/SERINE-RICH SPLICING FACTOR 35, 35 KDA
PROTEIN); RNA binding | chr5:25699075-25700779 REVERSE
Length = 303
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 49/77 (63%)
Query: 46 GLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHH 105
LLV N+ +DL F +YG V DV++P++ TG+ RGF FV+Y++ ++A +A
Sbjct: 17 SLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVER 76
Query: 106 LNHTIIGGREIRIVFAE 122
L+ ++ GREI + FA+
Sbjct: 77 LDGRVVDGREITVQFAK 93
>AT5G64200.1 | Symbols: ATSC35 | ATSC35 (ARABIDOPSIS THALIANA
ARGININE/SERINE-RICH SPLICING FACTOR 35, 35 KDA
PROTEIN); RNA binding | chr5:25699075-25700779 REVERSE
Length = 303
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 49/77 (63%)
Query: 46 GLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHH 105
LLV N+ +DL F +YG V DV++P++ TG+ RGF FV+Y++ ++A +A
Sbjct: 17 SLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVER 76
Query: 106 LNHTIIGGREIRIVFAE 122
L+ ++ GREI + FA+
Sbjct: 77 LDGRVVDGREITVQFAK 93
>AT1G71800.1 | Symbols: | cleavage stimulation factor, putative |
chr1:27003268-27005512 FORWARD
Length = 461
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%)
Query: 47 LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
+ V N+P DA E LR GPV L + TG+P+G+GF +Y+ E A A+ +L
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70
Query: 107 NHTIIGGREIRIVFAEENRKT 127
I GR++R+ FAE ++ T
Sbjct: 71 QSYEINGRQLRVDFAENDKGT 91
>AT3G10400.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:3232641-3233426 FORWARD
Length = 261
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%)
Query: 45 SGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKH 104
S L V NL D+ F +G V V + K+ +T + RG FV Y EDAA+A
Sbjct: 57 STLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAAR 116
Query: 105 HLNHTIIGGREIRIVFAEENRKTPQ 129
++ I+ GR++ + A +N + +
Sbjct: 117 SMDAKILNGRKLTVSIAADNGRASE 141
>AT3G52380.1 | Symbols: PDE322, CP33 | CP33 (PIGMENT DEFECTIVE 322);
RNA binding | chr3:19432597-19433833 FORWARD
Length = 329
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 37/76 (48%)
Query: 47 LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
L V NLP +L F G V DV + + T RGFGFV E+A EA
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMF 177
Query: 107 NHTIIGGREIRIVFAE 122
N + IGGR +++ F E
Sbjct: 178 NSSQIGGRTVKVNFPE 193
>AT4G36960.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:17427345-17429584 FORWARD
Length = 379
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 13/87 (14%)
Query: 47 LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFG---EDAAEAK 103
+ V +P D R FERYG + D+Y+PK+Y + + RG GF+ + ED E
Sbjct: 93 IFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMEDT 152
Query: 104 HHLNHTIIGGREIRIVFAEENRKTPQE 130
H L T + +R TP+E
Sbjct: 153 HDLGGTTVA----------VDRATPKE 169
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Query: 47 LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEA---K 103
L+V +P D + L+ ++G ++D + K+ TG RGFG+V + EDA A +
Sbjct: 5 LVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKGE 64
Query: 104 HHLNHTIIGGREIRIVFAEENRKTPQE 130
H L + I+ E+++ +E + P +
Sbjct: 65 HFLGNRIL---EVKVATPKEEMRQPAK 88
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 47 LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
+ V LP +A +DLR F R+G ++D Y+PK+ RGFGFV F E+ +
Sbjct: 242 IFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVT--FAENGVADRVAR 299
Query: 107 NHTIIGGREIRI 118
I G+E+ I
Sbjct: 300 RSHEICGQEVAI 311
>AT3G54230.1 | Symbols: | nucleic acid binding |
chr3:20084850-20091120 FORWARD
Length = 1007
Score = 50.1 bits (118), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 47 LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
L+VR L DA E LR F ++ P+KD+ L ++ +T RGF FV + EDA +A
Sbjct: 434 LVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEAT 493
Query: 107 NHTII--GGREIRIVFAE 122
N T + G+ +R+ +A+
Sbjct: 494 NRTALERNGKILRVAYAK 511
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | GR-RBP4/GRP4 (GLYCINE-RICH
RNA-BINDING PROTEIN 4); RNA binding |
chr3:8606769-8607684 REVERSE
Length = 136
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%)
Query: 43 LPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEA 102
+ S L V L L+ F +G V + + + TG RGFGFV + + A A
Sbjct: 33 MSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNA 92
Query: 103 KHHLNHTIIGGREIRIVFAEENRKTPQE 130
++ + GR+IR+ A E P+
Sbjct: 93 IKEMDGKELNGRQIRVNLATERSSAPRS 120
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | GR-RBP4/GRP4 (GLYCINE-RICH
RNA-BINDING PROTEIN 4); RNA binding / double-stranded
DNA binding / single-stranded DNA binding |
chr3:8606769-8607684 REVERSE
Length = 136
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%)
Query: 43 LPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEA 102
+ S L V L L+ F +G V + + + TG RGFGFV + + A A
Sbjct: 33 MSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNA 92
Query: 103 KHHLNHTIIGGREIRIVFAEENRKTPQE 130
++ + GR+IR+ A E P+
Sbjct: 93 IKEMDGKELNGRQIRVNLATERSSAPRS 120
>AT2G16940.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:7349951-7354134 REVERSE
Length = 561
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 47 LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
L V NL ++ +DLR FE +G V+ V +P++ TG +GFGFV++ EDA A +
Sbjct: 287 LYVGNLHINMSEDDLRKVFESFGSVELVQVPRDE-TGLCKGFGFVQFARLEDARNALNLN 345
Query: 107 NHTIIGGREIRIVFAEENRKTPQ 129
I GR I++ + + P+
Sbjct: 346 GQLEIAGRAIKVSAVTDQTEVPE 368
>AT4G20030.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:10846372-10847256 FORWARD
Length = 152
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%)
Query: 42 PLPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAE 101
PL S ++VRNLP + L+ F +G + +V L K+ +G+ F+++ +DA
Sbjct: 37 PLASKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFL 96
Query: 102 AKHHLNHTIIGGREIRIVFAEENRKTPQ 129
A ++ + GR I I A+ ++ Q
Sbjct: 97 AIETMDRRMYNGRMIYIDIAKPGKRDFQ 124
>AT5G09880.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:3081647-3085180 REVERSE
Length = 527
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 42 PLPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAE 101
P L V NL + LR FE +GPV+ V LP + TG+ +GFGF+++ E +
Sbjct: 262 PADRKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKA 321
Query: 102 AKHHLNHTI-IGGREIRI 118
A+ LN + I GR I++
Sbjct: 322 AQIALNGKLEIAGRTIKV 339
>AT1G07350.2 | Symbols: | transformer serine/arginine-rich
ribonucleoprotein, putative | chr1:2258814-2259584
REVERSE
Length = 129
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%)
Query: 46 GLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHH 105
L V L DL F + G V DV+L + +T E RGFGF+ + DA
Sbjct: 46 SLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRS 105
Query: 106 LNHTIIGGREIRI 118
L+H+++ GR I +
Sbjct: 106 LDHSVLQGRVITV 118
>AT4G14300.1 | Symbols: | heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative | chr4:8231175-8232781
FORWARD
Length = 411
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 47 LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
+ V LP E+ R FE YGPV DV + + T PRGFGFV + EDA ++ H
Sbjct: 112 IFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFD-SEDAVDSVLHK 170
Query: 107 NHTIIGGREIRI 118
+ G+++ +
Sbjct: 171 TFHDLSGKQVEV 182
>AT4G19610.1 | Symbols: | RNA binding | chr4:10677492-10681633
FORWARD
Length = 816
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%)
Query: 47 LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
L VRNLP A E+L F +G + +V+L + T RG ++ Y E AA A L
Sbjct: 296 LFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAMEEL 355
Query: 107 NHTIIGGREIRIVFAEENRKTPQEM 131
+++ GR + I+ A+ + +++
Sbjct: 356 DNSSFQGRLLHILPAKHRETSDKQV 380
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 45 SGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKH 104
S + V+NLP + + LR F + G + D L ++ G+ R FGF+ +R ++A +A
Sbjct: 2 SRICVKNLPKHVKEDQLRDHFSQKGEITDAKLMRSN-DGKSRQFGFIGFRSAQEAQQAIK 60
Query: 105 HLNHTIIGGREIRIVFA 121
+ N+T +G I + A
Sbjct: 61 YFNNTYLGTSLIIVEIA 77
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 45 SGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKH 104
+ L V+N+ +A +LR F +G +K + LPK G+ G+ FV++ ++A AK
Sbjct: 702 TKLHVKNIAFEATKRELRQLFSPFGQIKSMRLPKKNI-GQYAGYAFVEFVTKQEALNAKK 760
Query: 105 HLNHTIIGGREIRIVFAEEN 124
L T GR + + +A ++
Sbjct: 761 ALASTHFYGRHLVLEWANDD 780
>AT2G18510.1 | Symbols: EMB2444 | EMB2444 (EMBRYO DEFECTIVE 2444);
RNA binding | chr2:8038636-8040599 REVERSE
Length = 363
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 65 FERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHLNHTIIGGREIRIVFAEEN 124
F + GPV +VY+PK+ T + +GF++YR EDA A LN + G+ IR+ A ++
Sbjct: 45 FVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVLNMIKLHGKPIRVNKASQD 104
Query: 125 RKT 127
+K+
Sbjct: 105 KKS 107
>AT3G46020.1 | Symbols: | RNA-binding protein, putative |
chr3:16923496-16924235 REVERSE
Length = 102
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 43 LPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEA 102
+ + L V L + LR F +G +K+ L ++ T P+GFGF+ + +DA +A
Sbjct: 5 ISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKA 64
Query: 103 KHHLNHTIIGGREIRIVFAEENRKTPQEMRV 133
L+ I+ GR I + A K +E+R
Sbjct: 65 LKSLDGKIVDGRLIFVEVA----KNAEEVRA 91
>AT1G01080.1 | Symbols: | 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative |
chr1:45503-46789 REVERSE
Length = 293
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%)
Query: 42 PLPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAE 101
P P L V N+P L F+ +G V V + +N TGE RG G+V A
Sbjct: 105 PRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKI 164
Query: 102 AKHHLNHTIIGGREIRIVFA 121
A L+ T +GGRE+R+ ++
Sbjct: 165 AIASLDGTEVGGREMRVRYS 184
>AT3G08000.1 | Symbols: | RNA-binding protein, putative |
chr3:2555040-2555835 REVERSE
Length = 143
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%)
Query: 47 LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
L + L + L+ F +G V +V + + +G RGFGFV + DA AK +
Sbjct: 43 LFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAM 102
Query: 107 NHTIIGGREIRIVFAEE 123
+ + GR +RI FA E
Sbjct: 103 DGKGLLGRPLRISFALE 119
>AT2G43370.1 | Symbols: | U1 small nuclear ribonucleoprotein 70
kDa, putative | chr2:18020508-18022453 FORWARD
Length = 333
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%)
Query: 47 LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
L V L + LR +YG +K++ L ++ TG RG+GFV+Y ++ A
Sbjct: 66 LFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDA 125
Query: 107 NHTIIGGREIRIVF 120
+H++I GREI + +
Sbjct: 126 HHSLIDGREIIVDY 139
>AT5G50250.1 | Symbols: | 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative | chr5:20469903-20471191 REVERSE
Length = 289
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 42 PLPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAE 101
P + L V NLP D + L FE+ G V+ + N T + RGFGFV E+A +
Sbjct: 110 PEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEK 169
Query: 102 AKHHLNHTIIGGREIRIVFAEENRKTPQEMR 132
A N + GR + + NR P+ R
Sbjct: 170 AVEKFNSFEVNGRRLTV-----NRAAPRGSR 195
>AT3G52150.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:19353052-19354068 FORWARD
Length = 253
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%)
Query: 47 LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
+ + N+P E L E +G V+ V + + Y+G R FGF + EDA L
Sbjct: 78 VYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKL 137
Query: 107 NHTIIGGREIRIVFAEE 123
N + GREI++ E+
Sbjct: 138 NGNTVEGREIKVNITEK 154
>AT3G52150.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:19353052-19354068 FORWARD
Length = 253
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%)
Query: 47 LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
+ + N+P E L E +G V+ V + + Y+G R FGF + EDA L
Sbjct: 78 VYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKL 137
Query: 107 NHTIIGGREIRIVFAEE 123
N + GREI++ E+
Sbjct: 138 NGNTVEGREIKVNITEK 154
>AT1G49600.1 | Symbols: ATRBP47A | ATRBP47A (ARABIDOPSIS THALIANA
RNA-BINDING PROTEIN 47A); RNA binding |
chr1:18360904-18363818 REVERSE
Length = 445
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 45 SGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKH 104
S + V L D EDL PF +G V V +P +G GFV++ + A EA
Sbjct: 327 STIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVG------KGCGFVQFANRQSAEEAIG 380
Query: 105 HLNHTIIGGREIRIVFA 121
+LN T+IG +R+ +
Sbjct: 381 NLNGTVIGKNTVRLSWG 397
>AT3G11400.1 | Symbols: ATEIF3G1, EIF3G1 | EIF3G1 (eukaryotic
translation initiation factor 3G1); RNA binding /
translation initiation factor | chr3:3578542-3580372
FORWARD
Length = 294
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 31/59 (52%)
Query: 49 VRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHLN 107
V NL D R DL F +G V VY+ + TG RGFGFV + EDA A + LN
Sbjct: 217 VTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLN 275
>AT5G61030.1 | Symbols: GR-RBP3 | GR-RBP3 (glycine-rich RNA-binding
protein 3); RNA binding | chr5:24578096-24579378 FORWARD
Length = 309
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%)
Query: 44 PSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAK 103
S L + + + LR F +YG V D + + TG RGFGFV + E A+ A
Sbjct: 39 SSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAI 98
Query: 104 HHLNHTIIGGREIRIVFAEE 123
L+ + GR +++ +A +
Sbjct: 99 QALDGRDLHGRVVKVNYAND 118
>AT4G09040.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:5795072-5797312 REVERSE
Length = 304
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 47 LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
L+ +N+P + PED+R FE+YG V D+ + + RG F++ E+AA A L
Sbjct: 96 LIAQNVPWTSTPEDIRSLFEKYGSVIDIEM-SMHKKERNRGLVFIEMASPEEAATALKSL 154
Query: 107 NHTIIGGREIRI 118
GR +++
Sbjct: 155 ESCEYEGRRLKV 166
>AT4G09040.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:5795072-5797190 REVERSE
Length = 244
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 47 LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
L+ +N+P + PED+R FE+YG V D+ + + RG F++ E+AA A L
Sbjct: 36 LIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSM-HKKERNRGLVFIEMASPEEAATALKSL 94
Query: 107 NHTIIGGREIRI 118
GR +++
Sbjct: 95 ESCEYEGRRLKV 106
>AT3G50670.1 | Symbols: U1SNRNP, U1-70K | U1-70K (SPLICEOSOMAL
PROTEIN U1A); RNA binding | chr3:18837457-18840473
REVERSE
Length = 427
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 47 LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
L V L ++ ++ FE YGP+K V+L + T +P+G+ F++Y D A
Sbjct: 140 LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQA 199
Query: 107 NHTIIGGREIRIVFAEENRKTP 128
+ I GR + +V E R P
Sbjct: 200 DGQKIDGRRV-LVDVERGRTVP 220
>AT4G16280.2 | Symbols: FCA | FCA; RNA binding |
chr4:9207180-9214428 REVERSE
Length = 747
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 47 LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
L V ++P A E++R FE++G V +V L K+ TG+ +G FVKY +DA A L
Sbjct: 122 LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRAL 181
Query: 107 NHTII---GGREIRIVFAEENRK 126
++ I G +++ +A+ R+
Sbjct: 182 HNQITLPGGTGPVQVRYADGERE 204
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 47 LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
L V +L A +++ F ++G V+DVYL ++ Y + RG GFVKY E A A L
Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYR-QSRGCGFVKYSSKETAMAAIDGL 271
Query: 107 N--HTIIGGREIRIV-FAEENRKTPQEMR 132
N +T+ G + IV FAE R P E R
Sbjct: 272 NGTYTMRGCNQPLIVRFAEPKRPKPGESR 300
>AT4G16280.3 | Symbols: FCA | FCA; RNA binding |
chr4:9208580-9214428 REVERSE
Length = 533
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 47 LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
L V ++P A E++R FE++G V +V L K+ TG+ +G FVKY +DA A L
Sbjct: 122 LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRAL 181
Query: 107 NHTII---GGREIRIVFAEENRK 126
++ I G +++ +A+ R+
Sbjct: 182 HNQITLPGGTGPVQVRYADGERE 204
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 47 LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
L V +L A +++ F ++G V+DVYL ++ Y + RG GFVKY E A A L
Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYR-QSRGCGFVKYSSKETAMAAIDGL 271
Query: 107 N--HTIIGGREIRIV-FAEENRKTPQEMR 132
N +T+ G + IV FAE R P E R
Sbjct: 272 NGTYTMRGCNQPLIVRFAEPKRPKPGESR 300
>AT4G34110.1 | Symbols: PABP2, PAB2 | PAB2 (POLY(A) BINDING PROTEIN
2); RNA binding | chr4:16337714-16339896 FORWARD
Length = 443
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 45 SGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKH 104
+ + V+NL +DL+ F YG + + K+ G+ +GFGFV + +DAA A
Sbjct: 29 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDG-EGKSKGFGFVNFENADDAARAVE 87
Query: 105 HLNHTIIGGREIRIVFAEENRKTPQEMRV 133
LN +E + A++ + E+RV
Sbjct: 88 SLNGHKFDDKEWYVGRAQKKSERETELRV 116
>AT2G47310.1 | Symbols: | flowering time control protein-related /
FCA gamma-related | chr2:19430861-19433916 FORWARD
Length = 512
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 45 SGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKH 104
+ L V + A D+R FE+YG V ++ LPK+ TGE + F+KY+ E+ A
Sbjct: 110 AKLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGERAAYCFIKYKKVEEGNAAIA 169
Query: 105 HLNHTIIGGRE---IRIVFAEENRK 126
L E +++ FAE R+
Sbjct: 170 ALTEQFTFPGEMLPVKVRFAEAERE 194
>AT1G07350.1 | Symbols: | transformer serine/arginine-rich
ribonucleoprotein, putative | chr1:2257730-2260099
REVERSE
Length = 382
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 37/76 (48%)
Query: 46 GLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHH 105
L V L DL F + G V DV+L + +T E RGFGF+ + DA
Sbjct: 76 SLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRS 135
Query: 106 LNHTIIGGREIRIVFA 121
L+H+++ GR I + A
Sbjct: 136 LDHSVLQGRVITVEKA 151
>AT5G11412.1 | Symbols: | nucleic acid binding / nucleotide binding
| chr5:3640350-3640877 REVERSE
Length = 175
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 47 LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
+ V LP + R E LR FE++G + V + + TG G+GFV +R E A A +
Sbjct: 54 IYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFRDAESATRACQN- 112
Query: 107 NHTIIGGREIRIVFA 121
+I GRE + A
Sbjct: 113 PKPVIDGREAKCNLA 127
>AT1G60650.2 | Symbols: | glycine-rich RNA-binding protein,
putative | chr1:22343754-22345813 FORWARD
Length = 292
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%)
Query: 43 LPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEA 102
L S + V L D L F+RYG + + + TG PRGFGF+ + A +A
Sbjct: 10 LESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDA 69
Query: 103 KHHLNHTIIGGREIRIVFAE 122
H++ +G + I + AE
Sbjct: 70 IKHMHGRELGNKVISVNKAE 89
>AT1G60650.1 | Symbols: | glycine-rich RNA-binding protein,
putative | chr1:22343754-22345813 FORWARD
Length = 292
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%)
Query: 43 LPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEA 102
L S + V L D L F+RYG + + + TG PRGFGF+ + A +A
Sbjct: 10 LESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDA 69
Query: 103 KHHLNHTIIGGREIRIVFAE 122
H++ +G + I + AE
Sbjct: 70 IKHMHGRELGNKVISVNKAE 89
>AT5G53720.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:21823848-21824238 FORWARD
Length = 100
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 33/66 (50%)
Query: 47 LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
+ V LP R E L FER+G + + + T +GFGFV +R E A A +
Sbjct: 11 IYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACENP 70
Query: 107 NHTIIG 112
NHTI G
Sbjct: 71 NHTIDG 76
>AT3G19130.1 | Symbols: ATRBP47B | ATRBP47B (RNA-BINDING PROTEIN
47B); RNA binding | chr3:6611404-6613829 REVERSE
Length = 435
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 47 LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
+ V + D EDLR PF ++G V V +P +G GFV++ + A +A L
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVG------KGCGFVQFADRKSAEDAIESL 376
Query: 107 NHTIIGGREIRIVFA 121
N T+IG +R+ +
Sbjct: 377 NGTVIGKNTVRLSWG 391
>AT2G33410.1 | Symbols: | heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative | chr2:14163161-14164511
FORWARD
Length = 404
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 47 LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
+ V LP ++ R FE YGPV D + + T PRGFGFV + ED+ + H
Sbjct: 112 IFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFD-SEDSVDLVLHK 170
Query: 107 NHTIIGGREIRI 118
+ G+++ +
Sbjct: 171 TFHDLNGKQVEV 182
>AT4G00830.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:352782-354965 FORWARD
Length = 495
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%)
Query: 42 PLPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAE 101
P S + + LP D EDLR E G + +V L K+ +G+ +G+ FV ++ + A +
Sbjct: 113 PHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQK 172
Query: 102 AKHHLNHTIIGGREIRIVFAE 122
A L+ G+ IR +E
Sbjct: 173 AIEELHSKEFKGKTIRCSLSE 193
>AT4G00830.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:352782-354965 FORWARD
Length = 495
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%)
Query: 42 PLPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAE 101
P S + + LP D EDLR E G + +V L K+ +G+ +G+ FV ++ + A +
Sbjct: 113 PHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQK 172
Query: 102 AKHHLNHTIIGGREIRIVFAE 122
A L+ G+ IR +E
Sbjct: 173 AIEELHSKEFKGKTIRCSLSE 193
>AT3G52660.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:19533576-19535713 FORWARD
Length = 471
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%)
Query: 42 PLPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAE 101
P S + + +P DA DL+G G V +V + + +G+ +G+ FV +R + AAE
Sbjct: 89 PHGSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAE 148
Query: 102 AKHHLNHTIIGGREIRIVFAEENRK 126
A LN+T G+ I+ + +
Sbjct: 149 AIDTLNNTDFRGKRIKCSTTQAKHR 173
>AT3G52660.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:19533576-19535713 FORWARD
Length = 471
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%)
Query: 42 PLPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAE 101
P S + + +P DA DL+G G V +V + + +G+ +G+ FV +R + AAE
Sbjct: 89 PHGSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAE 148
Query: 102 AKHHLNHTIIGGREIRIVFAEENRK 126
A LN+T G+ I+ + +
Sbjct: 149 AIDTLNNTDFRGKRIKCSTTQAKHR 173
>AT1G58470.1 | Symbols: RBP1, XF41, ATRBP1 | ATRBP1 (ARABIDOPSIS
THALIANA RNA-BINDING PROTEIN 1); RNA binding |
chr1:21731039-21732204 FORWARD
Length = 360
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 47 LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
L V + + E L+ F RYG V + + K TG+PRGFGFV++ D +A
Sbjct: 8 LFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRD- 66
Query: 107 NHTIIG 112
H I+G
Sbjct: 67 THFILG 72
>AT1G22760.1 | Symbols: PAB3 | PAB3 (POLY(A) BINDING PROTEIN 3); RNA
binding | chr1:8055588-8058788 FORWARD
Length = 660
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 45 SGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKH 104
+ + V+NLP + ++LR F ++G + + ++ +G R FGFV + E AA A
Sbjct: 229 TNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRD-QSGNSRCFGFVNFECTEAAASAVE 287
Query: 105 HLNHTIIGGREIRIVFAEENRKTPQEMR 132
+N +G + + A++ + +E+R
Sbjct: 288 KMNGISLGDDVLYVGRAQKKSEREEELR 315
>AT4G13860.1 | Symbols: | glycine-rich RNA-binding protein,
putative | chr4:8022597-8023158 FORWARD
Length = 87
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%)
Query: 43 LPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEA 102
+ + + V NL + LR F YG V D + ++ YT RGFGFV Y +A A
Sbjct: 1 MATRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAA 60
Query: 103 KHHLNHTIIGGREIRI 118
++ + GR + +
Sbjct: 61 VSGMDGKELNGRRVSV 76
>AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:17362319-17363754 REVERSE
Length = 352
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 10/96 (10%)
Query: 47 LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
+ V +P D DL F +YG + DV L ++ TG+ +GF F+ Y A +L
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 107 NHTIIGGREIRIVFA----------EENRKTPQEMR 132
N ++ GR I++ EE R+ +E R
Sbjct: 98 NGALVLGRTIKVDHCGAYKKHEEEDEETRRQNREAR 133
>AT1G71770.1 | Symbols: PAB5 | PAB5 (POLY(A)-BINDING PROTEIN); RNA
binding | chr1:26994439-26997109 REVERSE
Length = 668
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 45 SGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKH 104
S L ++NL E L+ F YG V + N G RGFGFV Y E+A A
Sbjct: 328 SNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNS-QGLSRGFGFVAYSNPEEALLAMK 386
Query: 105 HLNHTIIGGREIRIVFAE 122
+N +IG + + + A+
Sbjct: 387 EMNGKMIGRKPLYVALAQ 404