Miyakogusa Predicted Gene

chr4.LjT32J05.120.nc
Show Alignment: 
BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr4.LjT32J05.120.nc + phase: 0 
         (293 letters)

Database: TAIR8_pep 
           32,825 sequences; 13,166,001 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G18810.1 | Symbols: SCL28 | SCL28 (SC35-like splicing factor ...   157   1e-38
AT3G13570.1 | Symbols: SCL30a | SCL30a (SC35-like splicing facto...   123   1e-28
AT1G55310.1 | Symbols: ATSCL33, SCL33, SR33 | SR33 (SC35-like sp...   120   1e-27
AT1G55310.2 | Symbols: ATSCL33, SCL33, SR33 | SR33 (SC35-like sp...   119   2e-27
AT3G55460.1 | Symbols: SCL30 | SCL30 (SC35-like splicing factor ...   114   5e-26
AT2G21440.1 | Symbols:  | RNA recognition motif (RRM)-containing...    66   2e-11
AT5G64200.2 | Symbols: ATSC35 | ATSC35 (ARABIDOPSIS THALIANA ARG...    64   8e-11
AT5G64200.1 | Symbols: ATSC35 | ATSC35 (ARABIDOPSIS THALIANA ARG...    64   8e-11
AT1G71800.1 | Symbols:  | cleavage stimulation factor, putative ...    60   2e-09
AT3G10400.1 | Symbols:  | RNA recognition motif (RRM)-containing...    51   9e-07
AT3G52380.1 | Symbols: PDE322, CP33 | CP33 (PIGMENT DEFECTIVE 32...    51   1e-06
AT4G36960.1 | Symbols:  | RNA recognition motif (RRM)-containing...    50   1e-06
AT3G54230.1 | Symbols:  | nucleic acid binding | chr3:20084850-2...    50   2e-06
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | GR-RBP4/GRP4 (GLYCINE-RIC...    49   3e-06
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | GR-RBP4/GRP4 (GLYCINE-RIC...    49   3e-06
AT2G16940.1 | Symbols:  | RNA recognition motif (RRM)-containing...    49   5e-06
AT4G20030.1 | Symbols:  | RNA recognition motif (RRM)-containing...    47   1e-05
AT5G09880.1 | Symbols:  | RNA recognition motif (RRM)-containing...    47   1e-05
AT1G07350.2 | Symbols:  | transformer serine/arginine-rich ribon...    47   1e-05
AT4G14300.1 | Symbols:  | heterogeneous nuclear ribonucleoprotei...    47   2e-05
AT4G19610.1 | Symbols:  | RNA binding | chr4:10677492-10681633 F...    46   2e-05
AT2G18510.1 | Symbols: EMB2444 | EMB2444 (EMBRYO DEFECTIVE 2444)...    46   2e-05
AT3G46020.1 | Symbols:  | RNA-binding protein, putative | chr3:1...    46   3e-05
AT1G01080.1 | Symbols:  | 33 kDa ribonucleoprotein, chloroplast,...    46   3e-05
AT3G08000.1 | Symbols:  | RNA-binding protein, putative | chr3:2...    45   4e-05
AT2G43370.1 | Symbols:  | U1 small nuclear ribonucleoprotein 70 ...    45   4e-05
AT5G50250.1 | Symbols:  | 31 kDa ribonucleoprotein, chloroplast,...    45   5e-05
AT3G52150.2 | Symbols:  | RNA recognition motif (RRM)-containing...    45   5e-05
AT3G52150.1 | Symbols:  | RNA recognition motif (RRM)-containing...    45   5e-05
AT1G49600.1 | Symbols: ATRBP47A | ATRBP47A (ARABIDOPSIS THALIANA...    45   5e-05
AT3G11400.1 | Symbols: ATEIF3G1, EIF3G1 | EIF3G1 (eukaryotic tra...    44   9e-05
AT5G61030.1 | Symbols: GR-RBP3 | GR-RBP3 (glycine-rich RNA-bindi...    44   1e-04
AT4G09040.1 | Symbols:  | RNA recognition motif (RRM)-containing...    44   1e-04
AT4G09040.2 | Symbols:  | RNA recognition motif (RRM)-containing...    44   1e-04
AT3G50670.1 | Symbols: U1SNRNP, U1-70K | U1-70K (SPLICEOSOMAL PR...    44   1e-04
AT4G16280.2 | Symbols: FCA | FCA; RNA binding | chr4:9207180-921...    44   2e-04
AT4G16280.3 | Symbols: FCA | FCA; RNA binding | chr4:9208580-921...    43   2e-04
AT4G34110.1 | Symbols: PABP2, PAB2 | PAB2 (POLY(A) BINDING PROTE...    43   2e-04
AT2G47310.1 | Symbols:  | flowering time control protein-related...    43   2e-04
AT1G07350.1 | Symbols:  | transformer serine/arginine-rich ribon...    43   2e-04
AT5G11412.1 | Symbols:  | nucleic acid binding / nucleotide bind...    43   3e-04
AT1G60650.2 | Symbols:  | glycine-rich RNA-binding protein, puta...    43   3e-04
AT1G60650.1 | Symbols:  | glycine-rich RNA-binding protein, puta...    43   3e-04
AT5G53720.1 | Symbols:  | RNA recognition motif (RRM)-containing...    43   3e-04
AT3G19130.1 | Symbols: ATRBP47B | ATRBP47B (RNA-BINDING PROTEIN ...    42   3e-04
AT2G33410.1 | Symbols:  | heterogeneous nuclear ribonucleoprotei...    42   3e-04
AT4G00830.2 | Symbols:  | RNA recognition motif (RRM)-containing...    42   3e-04
AT4G00830.1 | Symbols:  | RNA recognition motif (RRM)-containing...    42   3e-04
AT3G52660.2 | Symbols:  | RNA recognition motif (RRM)-containing...    42   4e-04
AT3G52660.1 | Symbols:  | RNA recognition motif (RRM)-containing...    42   4e-04
AT1G58470.1 | Symbols: RBP1, XF41, ATRBP1 | ATRBP1 (ARABIDOPSIS ...    42   4e-04
AT1G22760.1 | Symbols: PAB3 | PAB3 (POLY(A) BINDING PROTEIN 3); ...    42   5e-04
AT4G13860.1 | Symbols:  | glycine-rich RNA-binding protein, puta...    42   6e-04
AT3G47120.1 | Symbols:  | RNA recognition motif (RRM)-containing...    41   8e-04
AT1G71770.1 | Symbols: PAB5 | PAB5 (POLY(A)-BINDING PROTEIN); RN...    41   0.001

>AT5G18810.1 | Symbols: SCL28 | SCL28 (SC35-like splicing factor
           28); RNA binding | chr5:6268927-6271160 REVERSE
          Length = 236

 Score =  157 bits (396), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 72/90 (80%), Positives = 80/90 (88%)

Query: 44  PSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAK 103
           PSGLL+RNLPLDARP DLR  FER+GP+KD+YLP+NYYTGEPRGFGFVKYR+ EDAAEA 
Sbjct: 46  PSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAM 105

Query: 104 HHLNHTIIGGREIRIVFAEENRKTPQEMRV 133
             +NH +IGGREI IVFAEENRKTPQEMR 
Sbjct: 106 KRMNHKVIGGREIAIVFAEENRKTPQEMRT 135


>AT3G13570.1 | Symbols: SCL30a | SCL30a (SC35-like splicing factor
           30a); RNA binding | chr3:4429571-4431609 REVERSE
          Length = 262

 Score =  123 bits (309), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 57/91 (62%), Positives = 73/91 (80%)

Query: 43  LPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEA 102
           LP+ LLVRNL  D R EDLR PFE++GPVKD+YLP++YYTG+PRGFGF+++    DAAEA
Sbjct: 35  LPTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEA 94

Query: 103 KHHLNHTIIGGREIRIVFAEENRKTPQEMRV 133
           KH ++  ++ GRE+ +VFAEENRK P EMR 
Sbjct: 95  KHQMDGYLLLGRELTVVFAEENRKKPTEMRT 125


>AT1G55310.1 | Symbols: ATSCL33, SCL33, SR33 | SR33 (SC35-like
           splicing factor 33); RNA binding |
           chr1:20634343-20636161 FORWARD
          Length = 220

 Score =  120 bits (300), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 56/89 (62%), Positives = 72/89 (80%)

Query: 43  LPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEA 102
           LP+ LLVRNL  D R EDLR  FE++GPVKD+YLP++YYTG+PRGFGFV++    DAA+A
Sbjct: 34  LPTSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADA 93

Query: 103 KHHLNHTIIGGREIRIVFAEENRKTPQEM 131
           KHH++  ++ GRE+ +VFAEENRK P EM
Sbjct: 94  KHHMDGYLLLGRELTVVFAEENRKKPTEM 122


>AT1G55310.2 | Symbols: ATSCL33, SCL33, SR33 | SR33 (SC35-like
           splicing factor 33); RNA binding |
           chr1:20634343-20636240 FORWARD
          Length = 222

 Score =  119 bits (299), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 56/89 (62%), Positives = 72/89 (80%)

Query: 43  LPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEA 102
           LP+ LLVRNL  D R EDLR  FE++GPVKD+YLP++YYTG+PRGFGFV++    DAA+A
Sbjct: 34  LPTSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADA 93

Query: 103 KHHLNHTIIGGREIRIVFAEENRKTPQEM 131
           KHH++  ++ GRE+ +VFAEENRK P EM
Sbjct: 94  KHHMDGYLLLGRELTVVFAEENRKKPTEM 122


>AT3G55460.1 | Symbols: SCL30 | SCL30 (SC35-like splicing factor
           30); RNA binding | chr3:20572001-20574479 FORWARD
          Length = 262

 Score =  114 bits (286), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 52/87 (59%), Positives = 68/87 (78%)

Query: 47  LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
           LLVRN+PLD RPE+LR PFER+GPV+DVY+P++YY+G+PRGF FV++    DA EA+  +
Sbjct: 49  LLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSM 108

Query: 107 NHTIIGGREIRIVFAEENRKTPQEMRV 133
           N     GREI +V A E+RK P+EMRV
Sbjct: 109 NRRSFAGREITVVVASESRKRPEEMRV 135


>AT2G21440.1 | Symbols:  | RNA recognition motif (RRM)-containing
           protein | chr2:9180792-9186145 REVERSE
          Length = 1003

 Score = 66.2 bits (160), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/75 (44%), Positives = 47/75 (62%)

Query: 47  LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
           L++RNLP  A+P D++  F   G V DV++PKN+ TG P+GF FVK+   +DAA A    
Sbjct: 333 LIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKKF 392

Query: 107 NHTIIGGREIRIVFA 121
           N  + G R I + +A
Sbjct: 393 NGHMFGKRPIAVDWA 407



 Score = 45.1 bits (105), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 39/84 (46%), Gaps = 1/84 (1%)

Query: 49  VRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHLNH 108
           V  LP       L   F   GPV+  +L  N  + E RGF FVK+   ED   A    N 
Sbjct: 24  VSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIELKNG 83

Query: 109 TIIGGREIRIVFAEENRKTPQEMR 132
           + +GGR I +  A  +R + QE R
Sbjct: 84  STVGGRRITVKQA-AHRPSLQERR 106


>AT5G64200.2 | Symbols: ATSC35 | ATSC35 (ARABIDOPSIS THALIANA
           ARGININE/SERINE-RICH SPLICING FACTOR 35, 35 KDA
           PROTEIN); RNA binding | chr5:25699075-25700779 REVERSE
          Length = 303

 Score = 64.3 bits (155), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 49/77 (63%)

Query: 46  GLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHH 105
            LLV N+      +DL   F +YG V DV++P++  TG+ RGF FV+Y++ ++A +A   
Sbjct: 17  SLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVER 76

Query: 106 LNHTIIGGREIRIVFAE 122
           L+  ++ GREI + FA+
Sbjct: 77  LDGRVVDGREITVQFAK 93


>AT5G64200.1 | Symbols: ATSC35 | ATSC35 (ARABIDOPSIS THALIANA
           ARGININE/SERINE-RICH SPLICING FACTOR 35, 35 KDA
           PROTEIN); RNA binding | chr5:25699075-25700779 REVERSE
          Length = 303

 Score = 64.3 bits (155), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 49/77 (63%)

Query: 46  GLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHH 105
            LLV N+      +DL   F +YG V DV++P++  TG+ RGF FV+Y++ ++A +A   
Sbjct: 17  SLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVER 76

Query: 106 LNHTIIGGREIRIVFAE 122
           L+  ++ GREI + FA+
Sbjct: 77  LDGRVVDGREITVQFAK 93


>AT1G71800.1 | Symbols:  | cleavage stimulation factor, putative |
           chr1:27003268-27005512 FORWARD
          Length = 461

 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 46/81 (56%)

Query: 47  LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
           + V N+P DA  E LR      GPV    L  +  TG+P+G+GF +Y+  E A  A+ +L
Sbjct: 11  VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70

Query: 107 NHTIIGGREIRIVFAEENRKT 127
               I GR++R+ FAE ++ T
Sbjct: 71  QSYEINGRQLRVDFAENDKGT 91


>AT3G10400.1 | Symbols:  | RNA recognition motif (RRM)-containing
           protein | chr3:3232641-3233426 FORWARD
          Length = 261

 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 43/85 (50%)

Query: 45  SGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKH 104
           S L V NL       D+   F  +G V  V + K+ +T + RG  FV Y   EDAA+A  
Sbjct: 57  STLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAAR 116

Query: 105 HLNHTIIGGREIRIVFAEENRKTPQ 129
            ++  I+ GR++ +  A +N +  +
Sbjct: 117 SMDAKILNGRKLTVSIAADNGRASE 141


>AT3G52380.1 | Symbols: PDE322, CP33 | CP33 (PIGMENT DEFECTIVE 322);
           RNA binding | chr3:19432597-19433833 FORWARD
          Length = 329

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 37/76 (48%)

Query: 47  LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
           L V NLP      +L   F   G V DV +  +  T   RGFGFV     E+A EA    
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMF 177

Query: 107 NHTIIGGREIRIVFAE 122
           N + IGGR +++ F E
Sbjct: 178 NSSQIGGRTVKVNFPE 193


>AT4G36960.1 | Symbols:  | RNA recognition motif (RRM)-containing
           protein | chr4:17427345-17429584 FORWARD
          Length = 379

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 13/87 (14%)

Query: 47  LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFG---EDAAEAK 103
           + V  +P      D R  FERYG + D+Y+PK+Y + + RG GF+ +      ED  E  
Sbjct: 93  IFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMEDT 152

Query: 104 HHLNHTIIGGREIRIVFAEENRKTPQE 130
           H L  T +            +R TP+E
Sbjct: 153 HDLGGTTVA----------VDRATPKE 169



 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 6/87 (6%)

Query: 47  LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEA---K 103
           L+V  +P D   + L+    ++G ++D  + K+  TG  RGFG+V +   EDA  A   +
Sbjct: 5   LVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKGE 64

Query: 104 HHLNHTIIGGREIRIVFAEENRKTPQE 130
           H L + I+   E+++   +E  + P +
Sbjct: 65  HFLGNRIL---EVKVATPKEEMRQPAK 88



 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 47  LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
           + V  LP +A  +DLR  F R+G ++D Y+PK+      RGFGFV   F E+    +   
Sbjct: 242 IFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVT--FAENGVADRVAR 299

Query: 107 NHTIIGGREIRI 118
               I G+E+ I
Sbjct: 300 RSHEICGQEVAI 311


>AT3G54230.1 | Symbols:  | nucleic acid binding |
           chr3:20084850-20091120 FORWARD
          Length = 1007

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 2/78 (2%)

Query: 47  LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
           L+VR L  DA  E LR  F ++ P+KD+ L ++ +T   RGF FV +   EDA +A    
Sbjct: 434 LVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEAT 493

Query: 107 NHTII--GGREIRIVFAE 122
           N T +   G+ +R+ +A+
Sbjct: 494 NRTALERNGKILRVAYAK 511


>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | GR-RBP4/GRP4 (GLYCINE-RICH
           RNA-BINDING PROTEIN 4); RNA binding |
           chr3:8606769-8607684 REVERSE
          Length = 136

 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 39/88 (44%)

Query: 43  LPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEA 102
           + S L V  L        L+  F  +G V +  +  +  TG  RGFGFV +   + A  A
Sbjct: 33  MSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNA 92

Query: 103 KHHLNHTIIGGREIRIVFAEENRKTPQE 130
              ++   + GR+IR+  A E    P+ 
Sbjct: 93  IKEMDGKELNGRQIRVNLATERSSAPRS 120


>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | GR-RBP4/GRP4 (GLYCINE-RICH
           RNA-BINDING PROTEIN 4); RNA binding / double-stranded
           DNA binding / single-stranded DNA binding |
           chr3:8606769-8607684 REVERSE
          Length = 136

 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 39/88 (44%)

Query: 43  LPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEA 102
           + S L V  L        L+  F  +G V +  +  +  TG  RGFGFV +   + A  A
Sbjct: 33  MSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNA 92

Query: 103 KHHLNHTIIGGREIRIVFAEENRKTPQE 130
              ++   + GR+IR+  A E    P+ 
Sbjct: 93  IKEMDGKELNGRQIRVNLATERSSAPRS 120


>AT2G16940.1 | Symbols:  | RNA recognition motif (RRM)-containing
           protein | chr2:7349951-7354134 REVERSE
          Length = 561

 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 1/83 (1%)

Query: 47  LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
           L V NL ++   +DLR  FE +G V+ V +P++  TG  +GFGFV++   EDA  A +  
Sbjct: 287 LYVGNLHINMSEDDLRKVFESFGSVELVQVPRDE-TGLCKGFGFVQFARLEDARNALNLN 345

Query: 107 NHTIIGGREIRIVFAEENRKTPQ 129
               I GR I++    +  + P+
Sbjct: 346 GQLEIAGRAIKVSAVTDQTEVPE 368


>AT4G20030.1 | Symbols:  | RNA recognition motif (RRM)-containing
           protein | chr4:10846372-10847256 FORWARD
          Length = 152

 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 45/88 (51%)

Query: 42  PLPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAE 101
           PL S ++VRNLP     + L+  F  +G + +V L K+      +G+ F+++   +DA  
Sbjct: 37  PLASKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFL 96

Query: 102 AKHHLNHTIIGGREIRIVFAEENRKTPQ 129
           A   ++  +  GR I I  A+  ++  Q
Sbjct: 97  AIETMDRRMYNGRMIYIDIAKPGKRDFQ 124


>AT5G09880.1 | Symbols:  | RNA recognition motif (RRM)-containing
           protein | chr5:3081647-3085180 REVERSE
          Length = 527

 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 1/78 (1%)

Query: 42  PLPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAE 101
           P    L V NL  +     LR  FE +GPV+ V LP +  TG+ +GFGF+++   E +  
Sbjct: 262 PADRKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKA 321

Query: 102 AKHHLNHTI-IGGREIRI 118
           A+  LN  + I GR I++
Sbjct: 322 AQIALNGKLEIAGRTIKV 339


>AT1G07350.2 | Symbols:  | transformer serine/arginine-rich
           ribonucleoprotein, putative | chr1:2258814-2259584
           REVERSE
          Length = 129

 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 36/73 (49%)

Query: 46  GLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHH 105
            L V  L       DL   F + G V DV+L  + +T E RGFGF+  +   DA      
Sbjct: 46  SLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRS 105

Query: 106 LNHTIIGGREIRI 118
           L+H+++ GR I +
Sbjct: 106 LDHSVLQGRVITV 118


>AT4G14300.1 | Symbols:  | heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative | chr4:8231175-8232781
           FORWARD
          Length = 411

 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 47  LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
           + V  LP     E+ R  FE YGPV DV +  +  T  PRGFGFV +   EDA ++  H 
Sbjct: 112 IFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFD-SEDAVDSVLHK 170

Query: 107 NHTIIGGREIRI 118
               + G+++ +
Sbjct: 171 TFHDLSGKQVEV 182


>AT4G19610.1 | Symbols:  | RNA binding | chr4:10677492-10681633
           FORWARD
          Length = 816

 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 44/85 (51%)

Query: 47  LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
           L VRNLP  A  E+L   F  +G + +V+L  +  T   RG  ++ Y   E AA A   L
Sbjct: 296 LFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAMEEL 355

Query: 107 NHTIIGGREIRIVFAEENRKTPQEM 131
           +++   GR + I+ A+    + +++
Sbjct: 356 DNSSFQGRLLHILPAKHRETSDKQV 380



 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 1/77 (1%)

Query: 45  SGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKH 104
           S + V+NLP   + + LR  F + G + D  L ++   G+ R FGF+ +R  ++A +A  
Sbjct: 2   SRICVKNLPKHVKEDQLRDHFSQKGEITDAKLMRSN-DGKSRQFGFIGFRSAQEAQQAIK 60

Query: 105 HLNHTIIGGREIRIVFA 121
           + N+T +G   I +  A
Sbjct: 61  YFNNTYLGTSLIIVEIA 77



 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 1/80 (1%)

Query: 45  SGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKH 104
           + L V+N+  +A   +LR  F  +G +K + LPK    G+  G+ FV++   ++A  AK 
Sbjct: 702 TKLHVKNIAFEATKRELRQLFSPFGQIKSMRLPKKNI-GQYAGYAFVEFVTKQEALNAKK 760

Query: 105 HLNHTIIGGREIRIVFAEEN 124
            L  T   GR + + +A ++
Sbjct: 761 ALASTHFYGRHLVLEWANDD 780


>AT2G18510.1 | Symbols: EMB2444 | EMB2444 (EMBRYO DEFECTIVE 2444);
           RNA binding | chr2:8038636-8040599 REVERSE
          Length = 363

 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 39/63 (61%)

Query: 65  FERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHLNHTIIGGREIRIVFAEEN 124
           F + GPV +VY+PK+  T   + +GF++YR  EDA  A   LN   + G+ IR+  A ++
Sbjct: 45  FVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVLNMIKLHGKPIRVNKASQD 104

Query: 125 RKT 127
           +K+
Sbjct: 105 KKS 107


>AT3G46020.1 | Symbols:  | RNA-binding protein, putative |
           chr3:16923496-16924235 REVERSE
          Length = 102

 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 4/91 (4%)

Query: 43  LPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEA 102
           + + L V  L      + LR  F  +G +K+  L ++  T  P+GFGF+ +   +DA +A
Sbjct: 5   ISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKA 64

Query: 103 KHHLNHTIIGGREIRIVFAEENRKTPQEMRV 133
              L+  I+ GR I +  A    K  +E+R 
Sbjct: 65  LKSLDGKIVDGRLIFVEVA----KNAEEVRA 91


>AT1G01080.1 | Symbols:  | 33 kDa ribonucleoprotein, chloroplast,
           putative / RNA-binding protein cp33, putative |
           chr1:45503-46789 REVERSE
          Length = 293

 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 40/80 (50%)

Query: 42  PLPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAE 101
           P P  L V N+P       L   F+ +G V  V + +N  TGE RG G+V       A  
Sbjct: 105 PRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKI 164

Query: 102 AKHHLNHTIIGGREIRIVFA 121
           A   L+ T +GGRE+R+ ++
Sbjct: 165 AIASLDGTEVGGREMRVRYS 184


>AT3G08000.1 | Symbols:  | RNA-binding protein, putative |
           chr3:2555040-2555835 REVERSE
          Length = 143

 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 38/77 (49%)

Query: 47  LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
           L +  L      + L+  F  +G V +V +  +  +G  RGFGFV +    DA  AK  +
Sbjct: 43  LFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAM 102

Query: 107 NHTIIGGREIRIVFAEE 123
           +   + GR +RI FA E
Sbjct: 103 DGKGLLGRPLRISFALE 119


>AT2G43370.1 | Symbols:  | U1 small nuclear ribonucleoprotein 70
           kDa, putative | chr2:18020508-18022453 FORWARD
          Length = 333

 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 40/74 (54%)

Query: 47  LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
           L V  L      + LR    +YG +K++ L ++  TG  RG+GFV+Y   ++   A    
Sbjct: 66  LFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDA 125

Query: 107 NHTIIGGREIRIVF 120
           +H++I GREI + +
Sbjct: 126 HHSLIDGREIIVDY 139


>AT5G50250.1 | Symbols:  | 31 kDa ribonucleoprotein, chloroplast,
           putative / RNA-binding protein RNP-T, putative /
           RNA-binding protein 1/2/3, putative / RNA-binding
           protein cp31, putative | chr5:20469903-20471191 REVERSE
          Length = 289

 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 5/91 (5%)

Query: 42  PLPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAE 101
           P  + L V NLP D   + L   FE+ G V+   +  N  T + RGFGFV     E+A +
Sbjct: 110 PEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEK 169

Query: 102 AKHHLNHTIIGGREIRIVFAEENRKTPQEMR 132
           A    N   + GR + +     NR  P+  R
Sbjct: 170 AVEKFNSFEVNGRRLTV-----NRAAPRGSR 195


>AT3G52150.2 | Symbols:  | RNA recognition motif (RRM)-containing
           protein | chr3:19353052-19354068 FORWARD
          Length = 253

 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 37/77 (48%)

Query: 47  LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
           + + N+P     E L    E +G V+ V +  + Y+G  R FGF   +  EDA      L
Sbjct: 78  VYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKL 137

Query: 107 NHTIIGGREIRIVFAEE 123
           N   + GREI++   E+
Sbjct: 138 NGNTVEGREIKVNITEK 154


>AT3G52150.1 | Symbols:  | RNA recognition motif (RRM)-containing
           protein | chr3:19353052-19354068 FORWARD
          Length = 253

 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 37/77 (48%)

Query: 47  LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
           + + N+P     E L    E +G V+ V +  + Y+G  R FGF   +  EDA      L
Sbjct: 78  VYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKL 137

Query: 107 NHTIIGGREIRIVFAEE 123
           N   + GREI++   E+
Sbjct: 138 NGNTVEGREIKVNITEK 154


>AT1G49600.1 | Symbols: ATRBP47A | ATRBP47A (ARABIDOPSIS THALIANA
           RNA-BINDING PROTEIN 47A); RNA binding |
           chr1:18360904-18363818 REVERSE
          Length = 445

 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 6/77 (7%)

Query: 45  SGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKH 104
           S + V  L  D   EDL  PF  +G V  V +P        +G GFV++   + A EA  
Sbjct: 327 STIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVG------KGCGFVQFANRQSAEEAIG 380

Query: 105 HLNHTIIGGREIRIVFA 121
           +LN T+IG   +R+ + 
Sbjct: 381 NLNGTVIGKNTVRLSWG 397


>AT3G11400.1 | Symbols: ATEIF3G1, EIF3G1 | EIF3G1 (eukaryotic
           translation initiation factor 3G1); RNA binding /
           translation initiation factor | chr3:3578542-3580372
           FORWARD
          Length = 294

 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 31/59 (52%)

Query: 49  VRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHLN 107
           V NL  D R  DL   F  +G V  VY+  +  TG  RGFGFV +   EDA  A + LN
Sbjct: 217 VTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLN 275


>AT5G61030.1 | Symbols: GR-RBP3 | GR-RBP3 (glycine-rich RNA-binding
           protein 3); RNA binding | chr5:24578096-24579378 FORWARD
          Length = 309

 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 39/80 (48%)

Query: 44  PSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAK 103
            S L +  +      + LR  F +YG V D  +  +  TG  RGFGFV +   E A+ A 
Sbjct: 39  SSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAI 98

Query: 104 HHLNHTIIGGREIRIVFAEE 123
             L+   + GR +++ +A +
Sbjct: 99  QALDGRDLHGRVVKVNYAND 118


>AT4G09040.1 | Symbols:  | RNA recognition motif (RRM)-containing
           protein | chr4:5795072-5797312 REVERSE
          Length = 304

 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 47  LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
           L+ +N+P  + PED+R  FE+YG V D+ +   +     RG  F++    E+AA A   L
Sbjct: 96  LIAQNVPWTSTPEDIRSLFEKYGSVIDIEM-SMHKKERNRGLVFIEMASPEEAATALKSL 154

Query: 107 NHTIIGGREIRI 118
                 GR +++
Sbjct: 155 ESCEYEGRRLKV 166


>AT4G09040.2 | Symbols:  | RNA recognition motif (RRM)-containing
           protein | chr4:5795072-5797190 REVERSE
          Length = 244

 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 47  LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
           L+ +N+P  + PED+R  FE+YG V D+ +   +     RG  F++    E+AA A   L
Sbjct: 36  LIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSM-HKKERNRGLVFIEMASPEEAATALKSL 94

Query: 107 NHTIIGGREIRI 118
                 GR +++
Sbjct: 95  ESCEYEGRRLKV 106


>AT3G50670.1 | Symbols: U1SNRNP, U1-70K | U1-70K (SPLICEOSOMAL
           PROTEIN U1A); RNA binding | chr3:18837457-18840473
           REVERSE
          Length = 427

 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 1/82 (1%)

Query: 47  LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
           L V  L  ++    ++  FE YGP+K V+L  +  T +P+G+ F++Y    D   A    
Sbjct: 140 LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQA 199

Query: 107 NHTIIGGREIRIVFAEENRKTP 128
           +   I GR + +V  E  R  P
Sbjct: 200 DGQKIDGRRV-LVDVERGRTVP 220


>AT4G16280.2 | Symbols: FCA | FCA; RNA binding |
           chr4:9207180-9214428 REVERSE
          Length = 747

 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 3/83 (3%)

Query: 47  LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
           L V ++P  A  E++R  FE++G V +V L K+  TG+ +G  FVKY   +DA  A   L
Sbjct: 122 LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRAL 181

Query: 107 NHTII---GGREIRIVFAEENRK 126
           ++ I    G   +++ +A+  R+
Sbjct: 182 HNQITLPGGTGPVQVRYADGERE 204



 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 4/89 (4%)

Query: 47  LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
           L V +L   A  +++   F ++G V+DVYL ++ Y  + RG GFVKY   E A  A   L
Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYR-QSRGCGFVKYSSKETAMAAIDGL 271

Query: 107 N--HTIIGGREIRIV-FAEENRKTPQEMR 132
           N  +T+ G  +  IV FAE  R  P E R
Sbjct: 272 NGTYTMRGCNQPLIVRFAEPKRPKPGESR 300


>AT4G16280.3 | Symbols: FCA | FCA; RNA binding |
           chr4:9208580-9214428 REVERSE
          Length = 533

 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 3/83 (3%)

Query: 47  LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
           L V ++P  A  E++R  FE++G V +V L K+  TG+ +G  FVKY   +DA  A   L
Sbjct: 122 LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRAL 181

Query: 107 NHTII---GGREIRIVFAEENRK 126
           ++ I    G   +++ +A+  R+
Sbjct: 182 HNQITLPGGTGPVQVRYADGERE 204



 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 4/89 (4%)

Query: 47  LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
           L V +L   A  +++   F ++G V+DVYL ++ Y  + RG GFVKY   E A  A   L
Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYR-QSRGCGFVKYSSKETAMAAIDGL 271

Query: 107 N--HTIIGGREIRIV-FAEENRKTPQEMR 132
           N  +T+ G  +  IV FAE  R  P E R
Sbjct: 272 NGTYTMRGCNQPLIVRFAEPKRPKPGESR 300


>AT4G34110.1 | Symbols: PABP2, PAB2 | PAB2 (POLY(A) BINDING PROTEIN
           2); RNA binding | chr4:16337714-16339896 FORWARD
          Length = 443

 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 1/89 (1%)

Query: 45  SGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKH 104
           + + V+NL      +DL+  F  YG +    + K+   G+ +GFGFV +   +DAA A  
Sbjct: 29  TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDG-EGKSKGFGFVNFENADDAARAVE 87

Query: 105 HLNHTIIGGREIRIVFAEENRKTPQEMRV 133
            LN      +E  +  A++  +   E+RV
Sbjct: 88  SLNGHKFDDKEWYVGRAQKKSERETELRV 116


>AT2G47310.1 | Symbols:  | flowering time control protein-related /
           FCA gamma-related | chr2:19430861-19433916 FORWARD
          Length = 512

 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 3/85 (3%)

Query: 45  SGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKH 104
           + L V  +   A   D+R  FE+YG V ++ LPK+  TGE   + F+KY+  E+   A  
Sbjct: 110 AKLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGERAAYCFIKYKKVEEGNAAIA 169

Query: 105 HLNHTIIGGRE---IRIVFAEENRK 126
            L        E   +++ FAE  R+
Sbjct: 170 ALTEQFTFPGEMLPVKVRFAEAERE 194


>AT1G07350.1 | Symbols:  | transformer serine/arginine-rich
           ribonucleoprotein, putative | chr1:2257730-2260099
           REVERSE
          Length = 382

 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 37/76 (48%)

Query: 46  GLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHH 105
            L V  L       DL   F + G V DV+L  + +T E RGFGF+  +   DA      
Sbjct: 76  SLYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRS 135

Query: 106 LNHTIIGGREIRIVFA 121
           L+H+++ GR I +  A
Sbjct: 136 LDHSVLQGRVITVEKA 151


>AT5G11412.1 | Symbols:  | nucleic acid binding / nucleotide binding
           | chr5:3640350-3640877 REVERSE
          Length = 175

 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 1/75 (1%)

Query: 47  LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
           + V  LP + R E LR  FE++G +  V +  +  TG   G+GFV +R  E A  A  + 
Sbjct: 54  IYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFRDAESATRACQN- 112

Query: 107 NHTIIGGREIRIVFA 121
              +I GRE +   A
Sbjct: 113 PKPVIDGREAKCNLA 127


>AT1G60650.2 | Symbols:  | glycine-rich RNA-binding protein,
           putative | chr1:22343754-22345813 FORWARD
          Length = 292

 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 38/80 (47%)

Query: 43  LPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEA 102
           L S + V  L  D     L   F+RYG + +  +     TG PRGFGF+ +     A +A
Sbjct: 10  LESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDA 69

Query: 103 KHHLNHTIIGGREIRIVFAE 122
             H++   +G + I +  AE
Sbjct: 70  IKHMHGRELGNKVISVNKAE 89


>AT1G60650.1 | Symbols:  | glycine-rich RNA-binding protein,
           putative | chr1:22343754-22345813 FORWARD
          Length = 292

 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 38/80 (47%)

Query: 43  LPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEA 102
           L S + V  L  D     L   F+RYG + +  +     TG PRGFGF+ +     A +A
Sbjct: 10  LESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDA 69

Query: 103 KHHLNHTIIGGREIRIVFAE 122
             H++   +G + I +  AE
Sbjct: 70  IKHMHGRELGNKVISVNKAE 89


>AT5G53720.1 | Symbols:  | RNA recognition motif (RRM)-containing
           protein | chr5:21823848-21824238 FORWARD
          Length = 100

 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 33/66 (50%)

Query: 47  LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
           + V  LP   R E L   FER+G +    +  +  T   +GFGFV +R  E A  A  + 
Sbjct: 11  IYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACENP 70

Query: 107 NHTIIG 112
           NHTI G
Sbjct: 71  NHTIDG 76


>AT3G19130.1 | Symbols: ATRBP47B | ATRBP47B (RNA-BINDING PROTEIN
           47B); RNA binding | chr3:6611404-6613829 REVERSE
          Length = 435

 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 6/75 (8%)

Query: 47  LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
           + V  +  D   EDLR PF ++G V  V +P        +G GFV++   + A +A   L
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVG------KGCGFVQFADRKSAEDAIESL 376

Query: 107 NHTIIGGREIRIVFA 121
           N T+IG   +R+ + 
Sbjct: 377 NGTVIGKNTVRLSWG 391


>AT2G33410.1 | Symbols:  | heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative | chr2:14163161-14164511
           FORWARD
          Length = 404

 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 47  LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
           + V  LP     ++ R  FE YGPV D  +  +  T  PRGFGFV +   ED+ +   H 
Sbjct: 112 IFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFD-SEDSVDLVLHK 170

Query: 107 NHTIIGGREIRI 118
               + G+++ +
Sbjct: 171 TFHDLNGKQVEV 182


>AT4G00830.2 | Symbols:  | RNA recognition motif (RRM)-containing
           protein | chr4:352782-354965 FORWARD
          Length = 495

 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 41/81 (50%)

Query: 42  PLPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAE 101
           P  S + +  LP D   EDLR   E  G + +V L K+  +G+ +G+ FV ++  + A +
Sbjct: 113 PHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQK 172

Query: 102 AKHHLNHTIIGGREIRIVFAE 122
           A   L+     G+ IR   +E
Sbjct: 173 AIEELHSKEFKGKTIRCSLSE 193


>AT4G00830.1 | Symbols:  | RNA recognition motif (RRM)-containing
           protein | chr4:352782-354965 FORWARD
          Length = 495

 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 41/81 (50%)

Query: 42  PLPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAE 101
           P  S + +  LP D   EDLR   E  G + +V L K+  +G+ +G+ FV ++  + A +
Sbjct: 113 PHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQK 172

Query: 102 AKHHLNHTIIGGREIRIVFAE 122
           A   L+     G+ IR   +E
Sbjct: 173 AIEELHSKEFKGKTIRCSLSE 193


>AT3G52660.2 | Symbols:  | RNA recognition motif (RRM)-containing
           protein | chr3:19533576-19535713 FORWARD
          Length = 471

 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 43/85 (50%)

Query: 42  PLPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAE 101
           P  S + +  +P DA   DL+G     G V +V + +   +G+ +G+ FV +R  + AAE
Sbjct: 89  PHGSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAE 148

Query: 102 AKHHLNHTIIGGREIRIVFAEENRK 126
           A   LN+T   G+ I+    +   +
Sbjct: 149 AIDTLNNTDFRGKRIKCSTTQAKHR 173


>AT3G52660.1 | Symbols:  | RNA recognition motif (RRM)-containing
           protein | chr3:19533576-19535713 FORWARD
          Length = 471

 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 43/85 (50%)

Query: 42  PLPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAE 101
           P  S + +  +P DA   DL+G     G V +V + +   +G+ +G+ FV +R  + AAE
Sbjct: 89  PHGSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAE 148

Query: 102 AKHHLNHTIIGGREIRIVFAEENRK 126
           A   LN+T   G+ I+    +   +
Sbjct: 149 AIDTLNNTDFRGKRIKCSTTQAKHR 173


>AT1G58470.1 | Symbols: RBP1, XF41, ATRBP1 | ATRBP1 (ARABIDOPSIS
           THALIANA RNA-BINDING PROTEIN 1); RNA binding |
           chr1:21731039-21732204 FORWARD
          Length = 360

 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 47  LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
           L V  +  +   E L+  F RYG V +  + K   TG+PRGFGFV++    D  +A    
Sbjct: 8   LFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRD- 66

Query: 107 NHTIIG 112
            H I+G
Sbjct: 67  THFILG 72


>AT1G22760.1 | Symbols: PAB3 | PAB3 (POLY(A) BINDING PROTEIN 3); RNA
           binding | chr1:8055588-8058788 FORWARD
          Length = 660

 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 1/88 (1%)

Query: 45  SGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKH 104
           + + V+NLP +   ++LR  F ++G +    + ++  +G  R FGFV +   E AA A  
Sbjct: 229 TNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRD-QSGNSRCFGFVNFECTEAAASAVE 287

Query: 105 HLNHTIIGGREIRIVFAEENRKTPQEMR 132
            +N   +G   + +  A++  +  +E+R
Sbjct: 288 KMNGISLGDDVLYVGRAQKKSEREEELR 315


>AT4G13860.1 | Symbols:  | glycine-rich RNA-binding protein,
           putative | chr4:8022597-8023158 FORWARD
          Length = 87

 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 36/76 (47%)

Query: 43  LPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEA 102
           + + + V NL      + LR  F  YG V D  + ++ YT   RGFGFV Y    +A  A
Sbjct: 1   MATRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAA 60

Query: 103 KHHLNHTIIGGREIRI 118
              ++   + GR + +
Sbjct: 61  VSGMDGKELNGRRVSV 76


>AT3G47120.1 | Symbols:  | RNA recognition motif (RRM)-containing
           protein | chr3:17362319-17363754 REVERSE
          Length = 352

 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 10/96 (10%)

Query: 47  LLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKHHL 106
           + V  +P D    DL   F +YG + DV L ++  TG+ +GF F+ Y        A  +L
Sbjct: 38  VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97

Query: 107 NHTIIGGREIRIVFA----------EENRKTPQEMR 132
           N  ++ GR I++             EE R+  +E R
Sbjct: 98  NGALVLGRTIKVDHCGAYKKHEEEDEETRRQNREAR 133


>AT1G71770.1 | Symbols: PAB5 | PAB5 (POLY(A)-BINDING PROTEIN); RNA
           binding | chr1:26994439-26997109 REVERSE
          Length = 668

 Score = 40.8 bits (94), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 1/78 (1%)

Query: 45  SGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRFGEDAAEAKH 104
           S L ++NL      E L+  F  YG V    +  N   G  RGFGFV Y   E+A  A  
Sbjct: 328 SNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNS-QGLSRGFGFVAYSNPEEALLAMK 386

Query: 105 HLNHTIIGGREIRIVFAE 122
            +N  +IG + + +  A+
Sbjct: 387 EMNGKMIGRKPLYVALAQ 404