Miyakogusa Predicted Gene
- chr4.CM1334.150.nc
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr4.CM1334.150.nc - phase: 0
(416 letters)
Database: TAIR8_pep
32,825 sequences; 13,166,001 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G11650.2 | Symbols: ATRBP45B | ATRBP45B; RNA binding | chr1:3... 425 e-119
AT4G27000.1 | Symbols: ATRBP45C | ATRBP45C; RNA binding | chr4:1... 397 e-111
AT5G54900.1 | Symbols: ATRBP45A | ATRBP45A (RNA-BINDING PROTEIN ... 392 e-109
AT1G11650.1 | Symbols: ATRBP45B | ATRBP45B; RNA binding | chr1:3... 367 e-102
AT3G19130.1 | Symbols: ATRBP47B | ATRBP47B (RNA-BINDING PROTEIN ... 345 3e-95
AT1G49600.1 | Symbols: ATRBP47A | ATRBP47A (ARABIDOPSIS THALIANA... 340 1e-93
AT5G19350.1 | Symbols: | RNA-binding protein 45 (RBP45), putati... 330 8e-91
AT5G19350.2 | Symbols: | RNA-binding protein 45 (RBP45), putati... 330 9e-91
AT1G47490.1 | Symbols: ATRBP47C | ATRBP47C; RNA binding | chr1:1... 316 2e-86
AT1G47500.1 | Symbols: ATRBP47C' | ATRBP47C' (RNA-BINDING PROTEI... 315 2e-86
AT1G47490.2 | Symbols: ATRBP47C | ATRBP47C; RNA binding | chr1:1... 218 4e-57
AT1G54080.1 | Symbols: UBP1A | UBP1A; mRNA 3'-UTR binding | chr1... 131 9e-31
AT1G54080.2 | Symbols: UBP1A | UBP1A; mRNA 3'-UTR binding | chr1... 126 3e-29
AT1G17370.2 | Symbols: UBP1B | UBP1B (OLIGOURIDYLATE BINDING PRO... 124 8e-29
AT1G17370.1 | Symbols: UBP1B | UBP1B (OLIGOURIDYLATE BINDING PRO... 123 2e-28
AT3G14100.1 | Symbols: | oligouridylate-binding protein, putati... 122 6e-28
AT2G23350.1 | Symbols: PAB4 | PAB4 (POLY(A) BINDING PROTEIN 4); ... 94 1e-19
AT1G22760.1 | Symbols: PAB3 | PAB3 (POLY(A) BINDING PROTEIN 3); ... 93 3e-19
AT2G36660.1 | Symbols: PAB7 | PAB7 (POLY(A) BINDING PROTEIN 7); ... 93 4e-19
AT1G71770.1 | Symbols: PAB5 | PAB5 (POLY(A)-BINDING PROTEIN); RN... 90 2e-18
AT1G49760.1 | Symbols: PAB8 | PAB8 (POLY(A) BINDING PROTEIN 8); ... 89 4e-18
AT1G34140.1 | Symbols: PAB1 | PAB1 (POLY(A) BINDING PROTEIN 1); ... 88 1e-17
AT3G52380.1 | Symbols: PDE322, CP33 | CP33 (PIGMENT DEFECTIVE 32... 87 3e-17
AT3G16380.1 | Symbols: PAB6 | PAB6 (POLY(A) BINDING PROTEIN 6); ... 84 2e-16
AT5G50250.1 | Symbols: | 31 kDa ribonucleoprotein, chloroplast,... 82 6e-16
AT4G24770.1 | Symbols: ATRBP31, CP31, ATRBP33, RBP31 | RBP31 (31... 81 1e-15
AT1G60000.1 | Symbols: | 29 kDa ribonucleoprotein, chloroplast,... 74 1e-13
AT1G29400.2 | Symbols: AML5 | AML5 (ARABIDOPSIS MEI2-LIKE PROTEI... 72 8e-13
AT1G29400.1 | Symbols: AML5 | AML5 (ARABIDOPSIS MEI2-LIKE PROTEI... 72 8e-13
AT5G09880.1 | Symbols: | RNA recognition motif (RRM)-containing... 71 1e-12
AT2G33410.1 | Symbols: | heterogeneous nuclear ribonucleoprotei... 70 2e-12
AT4G14300.1 | Symbols: | heterogeneous nuclear ribonucleoprotei... 70 4e-12
AT2G16940.1 | Symbols: | RNA recognition motif (RRM)-containing... 69 4e-12
AT2G37220.1 | Symbols: | 29 kDa ribonucleoprotein, chloroplast,... 68 1e-11
AT4G34110.1 | Symbols: PABP2, PAB2 | PAB2 (POLY(A) BINDING PROTE... 66 4e-11
AT4G00830.2 | Symbols: | RNA recognition motif (RRM)-containing... 66 5e-11
AT4G00830.1 | Symbols: | RNA recognition motif (RRM)-containing... 66 5e-11
AT2G42890.1 | Symbols: AML2 | AML2; RNA binding | chr2:17857154-... 65 6e-11
AT2G42890.3 | Symbols: AML2 | AML2 | chr2:17857709-17861282 FORWARD 65 7e-11
AT2G42890.2 | Symbols: AML2 | AML2; RNA binding | chr2:17857709-... 65 7e-11
AT2G18510.1 | Symbols: EMB2444 | EMB2444 (EMBRYO DEFECTIVE 2444)... 65 9e-11
AT2G44710.1 | Symbols: | RNA recognition motif (RRM)-containing... 62 5e-10
AT3G13224.2 | Symbols: | RNA recognition motif (RRM)-containing... 62 6e-10
AT3G04500.1 | Symbols: | RNA recognition motif (RRM)-containing... 62 6e-10
AT1G53650.2 | Symbols: CID8 | CID8; RNA binding | chr1:20032930-... 62 9e-10
AT4G16280.3 | Symbols: FCA | FCA; RNA binding | chr4:9208580-921... 60 2e-09
AT4G16280.2 | Symbols: FCA | FCA; RNA binding | chr4:9207180-921... 60 2e-09
AT2G42240.1 | Symbols: | nucleic acid binding | chr2:17603922-1... 60 2e-09
AT2G43410.1 | Symbols: FPA | FPA; RNA binding | chr2:18033474-18... 60 2e-09
AT2G43410.4 | Symbols: FPA | FPA | chr2:18033474-18038066 REVERSE 60 3e-09
AT2G43410.3 | Symbols: FPA | FPA | chr2:18033474-18038066 REVERSE 60 3e-09
AT2G43410.2 | Symbols: FPA | FPA | chr2:18033474-18038066 REVERSE 60 3e-09
AT1G53650.1 | Symbols: CID8 | CID8; RNA binding / protein bindin... 60 3e-09
AT5G41690.1 | Symbols: | RNA binding | chr5:16687354-16691417 R... 60 3e-09
AT4G13850.3 | Symbols: GR-RBP2, GRP2, ATGRP2 | ATGRP2 (GLYCINE-R... 59 7e-09
AT4G13850.2 | Symbols: GR-RBP2, GRP2, ATGRP2 | ATGRP2 (GLYCINE-R... 59 7e-09
AT4G13850.1 | Symbols: GR-RBP2, GRP2, ATGRP2 | ATGRP2 (GLYCINE-R... 59 7e-09
AT1G58470.1 | Symbols: RBP1, XF41, ATRBP1 | ATRBP1 (ARABIDOPSIS ... 59 8e-09
AT1G03457.2 | Symbols: | RNA-binding protein, putative | chr1:8... 59 8e-09
AT4G26650.1 | Symbols: | RNA recognition motif (RRM)-containing... 58 9e-09
AT4G18120.2 | Symbols: AML3 | AML3 (ARABIDOPSIS MEI2-LIKE) | chr... 58 9e-09
AT4G18120.1 | Symbols: AML3 | AML3 (ARABIDOPSIS MEI2-LIKE); RNA ... 58 9e-09
AT4G26650.2 | Symbols: | RNA recognition motif (RRM)-containing... 58 1e-08
AT3G13224.1 | Symbols: | RNA recognition motif (RRM)-containing... 58 1e-08
AT3G52150.2 | Symbols: | RNA recognition motif (RRM)-containing... 58 1e-08
AT3G52150.1 | Symbols: | RNA recognition motif (RRM)-containing... 58 1e-08
AT4G13850.4 | Symbols: GR-RBP2, GRP2, ATGRP2 | ATGRP2 (GLYCINE-R... 58 1e-08
AT2G35410.1 | Symbols: | 33 kDa ribonucleoprotein, chloroplast,... 57 2e-08
AT2G41060.2 | Symbols: | RNA recognition motif (RRM)-containing... 57 2e-08
AT2G41060.1 | Symbols: | RNA recognition motif (RRM)-containing... 57 2e-08
AT5G61030.1 | Symbols: GR-RBP3 | GR-RBP3 (glycine-rich RNA-bindi... 56 4e-08
AT2G42240.2 | Symbols: | similar to RNA-binding protein, putati... 56 5e-08
AT5G25060.1 | Symbols: | RNA recognition motif (RRM)-containing... 55 6e-08
AT2G42240.3 | Symbols: | similar to RNA-binding protein, putati... 55 7e-08
AT5G47620.2 | Symbols: | heterogeneous nuclear ribonucleoprotei... 55 7e-08
AT5G47620.1 | Symbols: | heterogeneous nuclear ribonucleoprotei... 55 7e-08
AT1G48920.1 | Symbols: ATNUC-L1, PARL1 | ATNUC-L1/PARL1 (PARALLE... 55 9e-08
AT3G07810.2 | Symbols: | heterogeneous nuclear ribonucleoprotei... 55 1e-07
AT3G07810.1 | Symbols: | heterogeneous nuclear ribonucleoprotei... 55 1e-07
AT1G07360.1 | Symbols: | zinc finger (CCCH-type) family protein... 54 1e-07
AT5G19960.1 | Symbols: | RNA recognition motif (RRM)-containing... 54 2e-07
AT3G20930.1 | Symbols: | RNA recognition motif (RRM)-containing... 54 2e-07
AT3G14450.1 | Symbols: CID9 | CID9 (CTC-Interacting Domain 9); R... 54 2e-07
AT5G40490.1 | Symbols: | RNA recognition motif (RRM)-containing... 53 3e-07
AT5G06210.1 | Symbols: | RNA-binding protein, putative | chr5:1... 53 4e-07
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | GR-RBP4/GRP4 (GLYCINE-RIC... 53 4e-07
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | GR-RBP4/GRP4 (GLYCINE-RIC... 53 4e-07
AT1G67770.1 | Symbols: TEL2 | TEL2 (TERMINAL EAR1-LIKE 2); RNA b... 52 5e-07
AT2G29580.1 | Symbols: | zinc finger (CCCH-type) family protein... 52 6e-07
AT3G54770.1 | Symbols: | RNA recognition motif (RRM)-containing... 52 9e-07
AT3G26420.1 | Symbols: ATRZ-1A | ATRZ-1A; RNA binding / nucleoti... 52 9e-07
AT3G15010.2 | Symbols: | RNA recognition motif (RRM)-containing... 52 1e-06
AT3G15010.1 | Symbols: | RNA recognition motif (RRM)-containing... 52 1e-06
AT3G49390.2 | Symbols: CID10 | CID10; RNA binding | chr3:1832588... 51 1e-06
AT3G49390.1 | Symbols: CID10 | CID10; RNA binding / protein bind... 51 1e-06
AT4G12640.1 | Symbols: | RNA recognition motif (RRM)-containing... 51 1e-06
AT5G04280.1 | Symbols: | glycine-rich RNA-binding protein | chr... 51 1e-06
AT3G26120.1 | Symbols: TEL1 | TEL1 (TERMINAL EAR1-LIKE 1); RNA b... 50 2e-06
AT3G56860.2 | Symbols: UBA2A | UBA2A; AU-rich element binding / ... 50 3e-06
AT3G56860.1 | Symbols: UBA2A | UBA2A; RNA binding | chr3:2106168... 50 3e-06
AT3G56860.3 | Symbols: UBA2A | UBA2A; RNA binding | chr3:2106168... 50 3e-06
AT3G53460.2 | Symbols: CP29 | CP29 (chloroplast 29 kDa ribonucle... 50 3e-06
AT3G53460.1 | Symbols: CP29 | CP29 (chloroplast 29 kDa ribonucle... 50 3e-06
AT4G39260.3 | Symbols: GR-RBP8, ATGRP8, CCR1 | ATGRP8/GR-RBP8 (C... 50 3e-06
AT5G55550.1 | Symbols: | RNA recognition motif (RRM)-containing... 50 4e-06
AT5G10800.1 | Symbols: | RNA recognition motif (RRM)-containing... 49 4e-06
AT5G55550.2 | Symbols: | RNA recognition motif (RRM)-containing... 49 4e-06
AT5G55550.3 | Symbols: | RNA recognition motif (RRM)-containing... 49 4e-06
AT4G09040.1 | Symbols: | RNA recognition motif (RRM)-containing... 49 5e-06
AT1G16610.1 | Symbols: SR45 | SR45 (arginine/serine-rich 45); RN... 49 5e-06
AT1G16610.2 | Symbols: SR45 | SR45 (arginine/serine-rich 45); RN... 49 6e-06
AT1G74230.1 | Symbols: GR-RBP5 | GR-RBP5 (glycine-rich RNA-bindi... 49 6e-06
AT1G60650.2 | Symbols: | glycine-rich RNA-binding protein, puta... 49 7e-06
AT1G60650.1 | Symbols: | glycine-rich RNA-binding protein, puta... 49 7e-06
AT4G09040.2 | Symbols: | RNA recognition motif (RRM)-containing... 49 7e-06
AT5G24440.1 | Symbols: CID13 | CID13 (CTC-Interacting Domain 13)... 49 8e-06
AT1G03457.1 | Symbols: | RNA-binding protein, putative | chr1:8... 48 9e-06
AT4G39260.1 | Symbols: GR-RBP8, ATGRP8, CCR1 | ATGRP8/GR-RBP8 (C... 48 9e-06
AT4G13860.1 | Symbols: | glycine-rich RNA-binding protein, puta... 48 1e-05
AT5G44200.2 | Symbols: ATCBP20, CBP20 | CBP20 (CAP-BINDING PROTE... 47 2e-05
AT5G44200.1 | Symbols: ATCBP20, CBP20 | CBP20 (CAP-BINDING PROTE... 47 2e-05
AT4G39260.2 | Symbols: GR-RBP8, ATGRP8, CCR1 | ATGRP8/GR-RBP8 (C... 47 2e-05
AT2G21660.2 | Symbols: GR-RBP7, GRP7, CCR2, ATGRP7 | ATGRP7 (COL... 47 2e-05
AT2G21660.1 | Symbols: GR-RBP7, GRP7, CCR2, ATGRP7 | ATGRP7 (COL... 47 2e-05
AT2G47310.1 | Symbols: | flowering time control protein-related... 47 2e-05
AT5G51300.3 | Symbols: | splicing factor-related | chr5:2086710... 47 2e-05
AT5G51300.2 | Symbols: | splicing factor-related | chr5:2086710... 47 2e-05
AT5G51300.1 | Symbols: | splicing factor-related | chr5:2086710... 47 2e-05
AT3G08000.1 | Symbols: | RNA-binding protein, putative | chr3:2... 46 3e-05
AT4G20030.1 | Symbols: | RNA recognition motif (RRM)-containing... 46 3e-05
AT3G46020.1 | Symbols: | RNA-binding protein, putative | chr3:1... 46 4e-05
AT3G18610.1 | Symbols: ATRANGAP1 | ATRANGAP1 (RAN GTPASE-ACTIVAT... 46 5e-05
AT4G19610.1 | Symbols: | RNA binding | chr4:10677492-10681633 F... 45 6e-05
AT4G03110.1 | Symbols: | RNA-binding protein, putative | chr4:1... 45 6e-05
AT4G39260.4 | Symbols: GR-RBP8, ATGRP8, CCR1 | ATGRP8/GR-RBP8 (C... 45 7e-05
AT2G46780.1 | Symbols: | RNA recognition motif (RRM)-containing... 45 1e-04
AT5G54580.1 | Symbols: | RNA recognition motif (RRM)-containing... 45 1e-04
AT4G03110.2 | Symbols: | RNA-binding protein, putative | chr4:1... 44 1e-04
AT5G46840.2 | Symbols: | RNA recognition motif (RRM)-containing... 44 2e-04
AT3G13700.2 | Symbols: | RNA-binding protein, putative | chr3:4... 44 2e-04
AT2G21690.1 | Symbols: | RNA-binding protein, putative | chr2:9... 44 2e-04
AT1G60900.1 | Symbols: | U2 snRNP auxiliary factor large subuni... 44 2e-04
AT5G46840.1 | Symbols: | RNA recognition motif (RRM)-containing... 44 2e-04
AT5G19030.2 | Symbols: | RNA recognition motif (RRM)-containing... 44 2e-04
AT2G43370.1 | Symbols: | U1 small nuclear ribonucleoprotein 70 ... 44 2e-04
AT1G76460.1 | Symbols: | RNA recognition motif (RRM)-containing... 44 2e-04
AT1G71800.1 | Symbols: | cleavage stimulation factor, putative ... 44 2e-04
AT5G47320.1 | Symbols: RPS19 | RPS19 (40S ribosomal protein S19)... 44 2e-04
AT5G10350.1 | Symbols: | polyadenylate-binding protein family p... 44 2e-04
AT5G10350.2 | Symbols: | polyadenylate-binding protein family p... 44 3e-04
AT5G06000.1 | Symbols: ATEIF3G2, EIF3G2 | EIF3G2 (eukaryotic tra... 43 3e-04
AT1G20880.1 | Symbols: | RNA recognition motif (RRM)-containing... 43 4e-04
AT5G61960.2 | Symbols: AML1 | AML1 (ARABIDOPSIS MEI2-LIKE PROTEI... 42 7e-04
AT5G61960.1 | Symbols: AML1 | AML1 (ARABIDOPSIS MEI2-LIKE PROTEI... 42 7e-04
AT1G22330.1 | Symbols: | RNA binding | chr1:7886682-7889230 FOR... 42 7e-04
AT5G19030.1 | Symbols: | RNA recognition motif (RRM)-containing... 42 9e-04
>AT1G11650.2 | Symbols: ATRBP45B | ATRBP45B; RNA binding |
chr1:3914895-3917941 FORWARD
Length = 405
Score = 425 bits (1093), Expect = e-119, Method: Compositional matrix adjust.
Identities = 210/296 (70%), Positives = 240/296 (81%), Gaps = 9/296 (3%)
Query: 67 TPDEVRTLWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGA 126
T DE+RTLWIGDLQYWMDEN+LY CFAHTGE+ + KVIRNK T Q EGYGF+EF S A A
Sbjct: 57 TADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAA 116
Query: 127 ERILQTYNGTIMPN-GGQNFRLNWATFSAGGERRHDDSPDYTIFVGDLAADVTDYHLTEV 185
ER+LQT+N +P+ Q FRLNWA+ S+G +R DDSPDYTIFVGDLAADVTDY L E
Sbjct: 117 ERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKR--DDSPDYTIFVGDLAADVTDYILLET 174
Query: 186 FRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTEMQGVVCSTRPMRIGPAAN 245
FR Y SVKGAKVVIDR+T RTKGYGFVRF+DESEQ+RAMTEM GV CSTRPMRIGPAA+
Sbjct: 175 FRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAAS 234
Query: 246 KNLGTGTGTQPKASYQNS-QGPQNENDPNNTTIFVGNLDPNVTDDHLRQVFGLYGDLVHV 304
K TG + SYQ+S G +NDPNNTT+FVG LD +VTDDHL+ VF YG++VHV
Sbjct: 235 KKGVTGQ----RDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHV 290
Query: 305 KIPQGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQTQSDPSQW 360
KIP GKRCGFVQF+++SCAEEALR+LNG LGG VRLSWGRSPSNKQ+ DPSQ+
Sbjct: 291 KIPAGKRCGFVQFSEKSCAEEALRMLNGVQLGGTTVRLSWGRSPSNKQS-GDPSQF 345
>AT4G27000.1 | Symbols: ATRBP45C | ATRBP45C; RNA binding |
chr4:13554989-13557769 REVERSE
Length = 415
Score = 397 bits (1019), Expect = e-111, Method: Compositional matrix adjust.
Identities = 195/287 (67%), Positives = 224/287 (78%), Gaps = 5/287 (1%)
Query: 70 EVRTLWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERI 129
E+R+LWIGDLQ WMDENYL F TGE KVIRNK SEGYGF+EF + A AER
Sbjct: 78 EIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERN 137
Query: 130 LQTYNGTIMPNGGQNFRLNWATFSAGGERRHDDSPDYTIFVGDLAADVTDYHLTEVFRTR 189
LQTYNG MP+ Q FRLNWA AG ERR + P++T+FVGDLA DVTD+ LTE F+
Sbjct: 138 LQTYNGAPMPSSEQAFRLNWAQLGAG-ERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAV 196
Query: 190 YNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTEMQGVVCSTRPMRIGPAANKNLG 249
Y+SVKGAKVV DR T R+KGYGFVRFADESEQ+RAMTEM G CS+RPMR GPAANK
Sbjct: 197 YSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPL 256
Query: 250 TGTGTQPKASYQNSQGPQNENDPNNTTIFVGNLDPNVTDDHLRQVFGLYGDLVHVKIPQG 309
T QP ASYQN+QG E+DP NTTIFVG +D +VT+D L+ VFG +G+LVHVKIP G
Sbjct: 257 T---MQP-ASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAG 312
Query: 310 KRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQTQSD 356
KRCGFVQ+A+R+CAE+AL VLNGT LGGQ++RLSWGRSPSNKQTQ D
Sbjct: 313 KRCGFVQYANRACAEQALSVLNGTQLGGQSIRLSWGRSPSNKQTQPD 359
>AT5G54900.1 | Symbols: ATRBP45A | ATRBP45A (RNA-BINDING PROTEIN
45A); RNA binding | chr5:22312638-22315352 FORWARD
Length = 387
Score = 392 bits (1006), Expect = e-109, Method: Compositional matrix adjust.
Identities = 192/293 (65%), Positives = 228/293 (77%), Gaps = 8/293 (2%)
Query: 70 EVRTLWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERI 129
+V++LWIGDLQ WMDENY+ FA +GE + KVIRNK T QSEGYGF+EF S + AER+
Sbjct: 58 DVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERV 117
Query: 130 LQTYNGTIMPNGGQNFRLNWATFSAGGERRHDDSPDYTIFVGDLAADVTDYHLTEVFRTR 189
LQTYNG MP+ Q FRLNWA AG +R + PD+TIFVGDLA +VTDY L++ F+
Sbjct: 118 LQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNV 177
Query: 190 YNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTEMQGVVCSTRPMRIGPAANKNLG 249
Y SVKGAKVV+DR T R+KGYGFVRFADE+EQ+RAMTEM G CSTRPMRIGPAANKN
Sbjct: 178 YGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANKN-- 235
Query: 250 TGTGTQPKASYQNSQGPQ-NENDPNNTTIFVGNLDPNVTDDHLRQVFGLYGDLVHVKIPQ 308
QP A YQN+QG +NDPNNTTIFVG LD NVTDD L+ +FG +G+L+HVKIP
Sbjct: 236 -ALPMQP-AMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIPP 293
Query: 309 GKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQTQSDPSQWN 361
GKRCGFVQ+A+++ AE AL VLNGT LGGQ++RLSWGRSP+ QSD +QWN
Sbjct: 294 GKRCGFVQYANKASAEHALSVLNGTQLGGQSIRLSWGRSPNK---QSDQAQWN 343
>AT1G11650.1 | Symbols: ATRBP45B | ATRBP45B; RNA binding |
chr1:3914895-3917301 FORWARD
Length = 306
Score = 367 bits (941), Expect = e-102, Method: Compositional matrix adjust.
Identities = 179/256 (69%), Positives = 206/256 (80%), Gaps = 8/256 (3%)
Query: 67 TPDEVRTLWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGA 126
T DE+RTLWIGDLQYWMDEN+LY CFAHTGE+ + KVIRNK T Q EGYGF+EF S A A
Sbjct: 57 TADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAA 116
Query: 127 ERILQTYNGTIMPN-GGQNFRLNWATFSAGGERRHDDSPDYTIFVGDLAADVTDYHLTEV 185
ER+LQT+N +P+ Q FRLNWA+ S+G +R DDSPDYTIFVGDLAADVTDY L E
Sbjct: 117 ERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKR--DDSPDYTIFVGDLAADVTDYILLET 174
Query: 186 FRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTEMQGVVCSTRPMRIGPAAN 245
FR Y SVKGAKVVIDR+T RTKGYGFVRF+DESEQ+RAMTEM GV CSTRPMRIGPAA+
Sbjct: 175 FRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAAS 234
Query: 246 KNLGTGTGTQPKASYQNS-QGPQNENDPNNTTIFVGNLDPNVTDDHLRQVFGLYGDLVHV 304
K TG + SYQ+S G +NDPNNTT+FVG LD +VTDDHL+ VF YG++VHV
Sbjct: 235 KKGVTGQ----RDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHV 290
Query: 305 KIPQGKRCGFVQFADR 320
KIP GKRCGFVQF+++
Sbjct: 291 KIPAGKRCGFVQFSEK 306
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 83/200 (41%), Gaps = 23/200 (11%)
Query: 167 TIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMT 226
T+++GDL + + L F + AKV+ ++ T + +GYGF+ FA + R +
Sbjct: 63 TLWIGDLQYWMDENFLYGCF-AHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQ 121
Query: 227 EMQGVVCSTRPMRIGPAANKNLGTGTGTQPKASYQNSQGPQNENDPNNTTIFVGNLDPNV 286
+ P ++ +L +G +D + TIFVG+L +V
Sbjct: 122 TFNNAPIPSFPDQLFRLNWASLSSG---------------DKRDDSPDYTIFVGDLAADV 166
Query: 287 TDDHLRQVF-GLYGDLVHVKIP------QGKRCGFVQFADRSCAEEALRVLNGTLLGGQN 339
TD L + F Y + K+ + K GFV+F+D S A+ +NG +
Sbjct: 167 TDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRP 226
Query: 340 VRLSWGRSPSNKQTQSDPSQ 359
+R+ S Q D Q
Sbjct: 227 MRIGPAASKKGVTGQRDSYQ 246
>AT3G19130.1 | Symbols: ATRBP47B | ATRBP47B (RNA-BINDING PROTEIN
47B); RNA binding | chr3:6611404-6613829 REVERSE
Length = 435
Score = 345 bits (885), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 172/308 (55%), Positives = 215/308 (69%), Gaps = 20/308 (6%)
Query: 69 DEVRTLWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAER 128
D+V+TLW+GDL +WMDE YL+ CF+HTGE+++VKVIRNK T+QSEGYGF+EF SRA AE
Sbjct: 105 DDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEE 164
Query: 129 ILQTYNGTIMPNGGQNFRLNWATFSAGGERRHDDSPDYTIFVGDLAADVTDYHLTEVFRT 188
+LQ Y+G++MPN Q FR+NWA+FS G +R ++ PD ++FVGDL+ DVTD L E F
Sbjct: 165 VLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSD 224
Query: 189 RYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTEMQGVVCSTRPMRIGPAANKN- 247
RY SVK AKVVID T R+KGYGFVRF DE+E+ RA+TEM G CS R MR+G A K
Sbjct: 225 RYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKRA 284
Query: 248 -------------LGTGTGTQPKASYQNSQGPQNENDPNNTTIFVGNLDPNVTDDHLRQV 294
L G G+ Y G Q++ + N TIFVG +DP+V D+ LRQ
Sbjct: 285 IANQQQHSSQAVILAGGHGSNGSMGY----GSQSDGESTNATIFVGGIDPDVIDEDLRQP 340
Query: 295 FGLYGDLVHVKIPQGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQTQ 354
F +G++V VKIP GK CGFVQFADR AE+A+ LNGT++G VRLSWGRSP NKQ +
Sbjct: 341 FSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWGRSP-NKQWR 399
Query: 355 SDP-SQWN 361
D QWN
Sbjct: 400 GDSGQQWN 407
>AT1G49600.1 | Symbols: ATRBP47A | ATRBP47A (ARABIDOPSIS THALIANA
RNA-BINDING PROTEIN 47A); RNA binding |
chr1:18360904-18363818 REVERSE
Length = 445
Score = 340 bits (871), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 173/299 (57%), Positives = 215/299 (71%), Gaps = 7/299 (2%)
Query: 69 DEVRTLWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAER 128
D+V+TLW+GDL +WMDE YL+ CF+HT E+++VKVIRNK T QSEGYGF+EF SR+ AE
Sbjct: 116 DDVKTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEE 175
Query: 129 ILQTYNGTIMPNGGQNFRLNWATFSAGGERRHDDSPDYTIFVGDLAADVTDYHLTEVFRT 188
LQ+++G MPN Q FRLNWA+FS G +R ++ PD +IFVGDLA DV+D L E F
Sbjct: 176 ALQSFSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAG 235
Query: 189 RYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTEMQGVVCSTRPMRIGPAANKNL 248
RY SVKGAKVVID T R+KGYGFVRF DE+E+ RAMTEM G CS+R MR+G A K
Sbjct: 236 RYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRA 295
Query: 249 ---GTGTGTQP--KASYQNSQGPQNENDPNNTTIFVGNLDPNVTDDHLRQVFGLYGDLVH 303
G G+Q A G ++ + NN+TIFVG LD +VT++ L Q F +G++V
Sbjct: 296 AAYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVS 355
Query: 304 VKIPQGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQTQSDP-SQWN 361
VKIP GK CGFVQFA+R AEEA+ LNGT++G VRLSWGRSP NKQ +SD +QWN
Sbjct: 356 VKIPVGKGCGFVQFANRQSAEEAIGNLNGTVIGKNTVRLSWGRSP-NKQWRSDSGNQWN 413
>AT5G19350.1 | Symbols: | RNA-binding protein 45 (RBP45), putative
| chr5:6518980-6521297 FORWARD
Length = 425
Score = 330 bits (847), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 181/350 (51%), Positives = 222/350 (63%), Gaps = 29/350 (8%)
Query: 67 TPDEVRTLWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGA 126
T +EVRTLWIGDLQYW+DENYL CF+ TGEL +VKVIRNK T Q EGYGF+EF S A A
Sbjct: 19 TLEEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAA 78
Query: 127 ERILQTYNGTIMPNGGQNFRLNWATFSAGGERRHDDSPDYTIFVGDLAADVTDYHLTEVF 186
ER LQTYNGT MP FRLNWA+F +G ++ D PD++IFVGDLA DVTDY L E F
Sbjct: 79 ERTLQTYNGTQMPGTELTFRLNWASFGSG--QKVDAGPDHSIFVGDLAPDVTDYLLQETF 136
Query: 187 RTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTEMQGVVCSTRPMRIGPAA-N 245
R Y+SV+GAKVV D T R+KGYGFV+FA+ESE+ RAM EM G+ CSTRPMRI A
Sbjct: 137 RVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPK 196
Query: 246 KNLGTGTGTQPKASY------------QNSQGPQNENDPNNTTIFVGNLDPNVTDDHLRQ 293
KN+G KA Y Q P E+D TTI V NLD NVT++ L++
Sbjct: 197 KNVGVQQQYVTKAVYPVTVPSAVAAPVQAYVAP-PESDVTCTTISVANLDQNVTEEELKK 255
Query: 294 VFGLYGDLVHVKIPQGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNK-- 351
F G++++VKIP K G+VQF R AEEA++ + G ++G Q VR+SW ++P
Sbjct: 256 AFSQLGEVIYVKIPATKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSKNPGQDGW 315
Query: 352 QTQSDPSQWNNSXXXXXXXXXXXXXXXXXXXPAGQDPNMYA----GYPGY 397
TQ+DP+QWN A QDP++YA GYP Y
Sbjct: 316 VTQADPNQWNGYYGYGQGYDAYAYG-------ATQDPSVYAYGGYGYPQY 358
>AT5G19350.2 | Symbols: | RNA-binding protein 45 (RBP45), putative
| chr5:6518980-6521297 FORWARD
Length = 421
Score = 330 bits (846), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 180/345 (52%), Positives = 221/345 (64%), Gaps = 23/345 (6%)
Query: 67 TPDEVRTLWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGA 126
T +EVRTLWIGDLQYW+DENYL CF+ TGEL +VKVIRNK T Q EGYGF+EF S A A
Sbjct: 19 TLEEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAA 78
Query: 127 ERILQTYNGTIMPNGGQNFRLNWATFSAGGERRHDDSPDYTIFVGDLAADVTDYHLTEVF 186
ER LQTYNGT MP FRLNWA+F +G ++ D PD++IFVGDLA DVTDY L E F
Sbjct: 79 ERTLQTYNGTQMPGTELTFRLNWASFGSG--QKVDAGPDHSIFVGDLAPDVTDYLLQETF 136
Query: 187 RTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTEMQGVVCSTRPMRIGPAA-N 245
R Y+SV+GAKVV D T R+KGYGFV+FA+ESE+ RAM EM G+ CSTRPMRI A
Sbjct: 137 RVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPK 196
Query: 246 KNLGTGTG-----TQPKASYQNSQG--PQNENDPNNTTIFVGNLDPNVTDDHLRQVFGLY 298
KN+G T P A Q E+D TTI V NLD NVT++ L++ F
Sbjct: 197 KNVGVQQQYVTKVTVPSAVAAPVQAYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQL 256
Query: 299 GDLVHVKIPQGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNK--QTQSD 356
G++++VKIP K G+VQF R AEEA++ + G ++G Q VR+SW ++P TQ+D
Sbjct: 257 GEVIYVKIPATKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSKNPGQDGWVTQAD 316
Query: 357 PSQWNNSXXXXXXXXXXXXXXXXXXXPAGQDPNMYA----GYPGY 397
P+QWN A QDP++YA GYP Y
Sbjct: 317 PNQWNGYYGYGQGYDAYAYG-------ATQDPSVYAYGGYGYPQY 354
>AT1G47490.1 | Symbols: ATRBP47C | ATRBP47C; RNA binding |
chr1:17427241-17429622 FORWARD
Length = 432
Score = 316 bits (809), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 161/288 (55%), Positives = 202/288 (70%), Gaps = 6/288 (2%)
Query: 70 EVRTLWIGDLQYWMDENYLYQCFAH--TGELATVKVIRNKNTNQSEGYGFLEFTSRAGAE 127
E +T+W+GDL +WMDE YL FA E+ +VKVIRNKN SEGYGF+EF S A+
Sbjct: 99 ENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVAD 158
Query: 128 RILQTYNGTIMPNGGQNFRLNWATFSAGGERRHDDSPDYTIFVGDLAADVTDYHLTEVFR 187
++L+ +NGT MPN Q FRLNWA+FS G +R ++ PD +IFVGDL+ DV+D L E F
Sbjct: 159 KVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFS 218
Query: 188 TRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTEMQGVVCSTRPMRIGPAANKN 247
+Y SVK AKVV+D T R+KGYGFVRF DE+E+ +AMTEM GV CS+R MRIGPA +
Sbjct: 219 EKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRK 278
Query: 248 LGTGTGTQPKASYQ-NSQGPQNENDPNNTTIFVGNLDPNVTDDHLRQVFGLYGDLVHVKI 306
G Q + Y N + E D NTTIFVG LD +VTD+ L+Q F +G++V VKI
Sbjct: 279 T---NGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKI 335
Query: 307 PQGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQTQ 354
P GK CGFVQF +R AEEAL LNGT++G Q VRLSWGR+P+NKQ +
Sbjct: 336 PVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPR 383
>AT1G47500.1 | Symbols: ATRBP47C' | ATRBP47C' (RNA-BINDING PROTEIN
47C'); RNA binding | chr1:17435122-17437245 FORWARD
Length = 434
Score = 315 bits (808), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 161/286 (56%), Positives = 201/286 (70%), Gaps = 6/286 (2%)
Query: 70 EVRTLWIGDLQYWMDENYLYQCF--AHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAE 127
E +T+W+GDLQ WMDE YL F A E+ ++KVIRNK+ SEGYGF+EF S A+
Sbjct: 101 ENKTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVAD 160
Query: 128 RILQTYNGTIMPNGGQNFRLNWATFSAGGERRHDDSPDYTIFVGDLAADVTDYHLTEVFR 187
++LQ +NG MPN Q FRLNWA+FS G +R ++ PD +IFVGDLA DV+D L E F
Sbjct: 161 KVLQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFS 220
Query: 188 TRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTEMQGVVCSTRPMRIGPAANKN 247
+Y SVK AKVV+D T R+KGYGFVRF DE+E+ +AMTEM GV CS+R MRIGPA +
Sbjct: 221 EKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRK 280
Query: 248 LGTGTGTQPKASYQNSQG-PQNENDPNNTTIFVGNLDPNVTDDHLRQVFGLYGDLVHVKI 306
G Q + Y S ++E D NTTIFVG LD +VTD+ L+Q F +G++V VKI
Sbjct: 281 T---NGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKI 337
Query: 307 PQGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQ 352
P GK CGFVQF +R AEEAL LNGT++G Q VRLSWGR+P+NKQ
Sbjct: 338 PVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQ 383
>AT1G47490.2 | Symbols: ATRBP47C | ATRBP47C; RNA binding |
chr1:17427241-17428554 FORWARD
Length = 310
Score = 218 bits (556), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 113/213 (53%), Positives = 143/213 (67%), Gaps = 6/213 (2%)
Query: 70 EVRTLWIGDLQYWMDENYLYQCFAH--TGELATVKVIRNKNTNQSEGYGFLEFTSRAGAE 127
E +T+W+GDL +WMDE YL FA E+ +VKVIRNKN SEGYGF+EF S A+
Sbjct: 99 ENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVAD 158
Query: 128 RILQTYNGTIMPNGGQNFRLNWATFSAGGERRHDDSPDYTIFVGDLAADVTDYHLTEVFR 187
++L+ +NGT MPN Q FRLNWA+FS G +R ++ PD +IFVGDL+ DV+D L E F
Sbjct: 159 KVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFS 218
Query: 188 TRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTEMQGVVCSTRPMRIGPAANKN 247
+Y SVK AKVV+D T R+KGYGFVRF DE+E+ +AMTEM GV CS+R MRIGPA +
Sbjct: 219 EKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRK 278
Query: 248 LGTGTGTQPKASYQ-NSQGPQNENDPNNTTIFV 279
G Q + Y N + E D NTT+ V
Sbjct: 279 T---NGYQQQGGYMPNGTLTRPEGDIMNTTVIV 308
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 84/186 (45%), Gaps = 26/186 (13%)
Query: 167 TIFVGDLAADVTDYHLTEVFRT-RYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAM 225
TI+VGDL + + +L F + + KV+ ++ ++GYGFV F + +
Sbjct: 102 TIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVL 161
Query: 226 TEMQGVVC--STRPMRIGPAANKNLGTGTGTQPKASYQNSQGPQNENDPNNTTIFVGNLD 283
E G + +P R+ A+ TG + EN+ + +IFVG+L
Sbjct: 162 REFNGTTMPNTDQPFRLNWAS---FSTGEK-------------RLENNGPDLSIFVGDLS 205
Query: 284 PNVTDDHLRQVFG-LYGDLVHVKIP------QGKRCGFVQFADRSCAEEALRVLNGTLLG 336
P+V+D+ L + F Y + K+ + K GFV+F D + +A+ +NG
Sbjct: 206 PDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCS 265
Query: 337 GQNVRL 342
+ +R+
Sbjct: 266 SRAMRI 271
>AT1G54080.1 | Symbols: UBP1A | UBP1A; mRNA 3'-UTR binding |
chr1:20187591-20190492 REVERSE
Length = 426
Score = 131 bits (329), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 93/298 (31%), Positives = 153/298 (51%), Gaps = 26/298 (8%)
Query: 68 PDEVRTLWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAE 127
P R+++ G++ + E L + FA TG + + K+IR ++ YGF+ + R A
Sbjct: 59 PTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS----YGFVHYFDRRCAS 114
Query: 128 RILQTYNGTIMPNGGQNFRLNWATFSAGGERRHDDSPDYTIFVGDLAADVTDYHLTEVFR 187
+ T NG + GQ ++NWA ++ G +R D S + IFVGDL+ +VTD L + F
Sbjct: 115 MAIMTLNGRHI--FGQPMKVNWA-YATG--QREDTSSHFNIFVGDLSPEVTDAALFDSF- 168
Query: 188 TRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTEMQGVVCSTRPMR-------- 239
+ +NS A+V+ D+ T R++G+GFV F ++ + A+ EM G S+R +R
Sbjct: 169 SAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWATKGA 228
Query: 240 -IGPAANKNLGTGTGTQPKASYQNSQGPQNENDPNN----TTIFVGNLDPNVTDDHLRQV 294
G + + G S ++ + NE+ P N TT++VGNL P VT L ++
Sbjct: 229 TFGEDKHSSDGKSVVELTNGSSEDGRELSNEDAPENNPQFTTVYVGNLSPEVTQLDLHRL 288
Query: 295 FGLYGDLV--HVKIPQGKRCGFVQFADRSCAEEALRVLNGT-LLGGQNVRLSWGRSPS 349
F G V V++ + K GFV++ A A+++ N L + +R SWG P+
Sbjct: 289 FYTLGAGVIEEVRVQRDKGFGFVRYNTHDEAALAIQMGNAQPFLFSRQIRCSWGNKPT 346
>AT1G54080.2 | Symbols: UBP1A | UBP1A; mRNA 3'-UTR binding |
chr1:20187591-20190492 REVERSE
Length = 430
Score = 126 bits (316), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 93/302 (30%), Positives = 154/302 (50%), Gaps = 30/302 (9%)
Query: 68 PDEVRTLWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAE 127
P R+++ G++ + E L + FA TG + + K+IR ++ YGF+ + R A
Sbjct: 59 PTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS----YGFVHYFDRRCAS 114
Query: 128 RILQTYNGTIMPNGGQNFRLNWATFSAGGERRHDDSPDYTIFVGDLAADVTDYHLTEVFR 187
+ T NG + GQ ++NWA ++ G +R D S + IFVGDL+ +VTD L + F
Sbjct: 115 MAIMTLNGRHI--FGQPMKVNWA-YATG--QREDTSSHFNIFVGDLSPEVTDAALFDSF- 168
Query: 188 TRYNSV----KGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTEMQGVVCSTRPMR---- 239
+ +NS + A+V+ D+ T R++G+GFV F ++ + A+ EM G S+R +R
Sbjct: 169 SAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWA 228
Query: 240 -----IGPAANKNLGTGTGTQPKASYQNSQGPQNENDPNN----TTIFVGNLDPNVTDDH 290
G + + G S ++ + NE+ P N TT++VGNL P VT
Sbjct: 229 TKGATFGEDKHSSDGKSVVELTNGSSEDGRELSNEDAPENNPQFTTVYVGNLSPEVTQLD 288
Query: 291 LRQVFGLYGDLV--HVKIPQGKRCGFVQFADRSCAEEALRVLNGT-LLGGQNVRLSWGRS 347
L ++F G V V++ + K GFV++ A A+++ N L + +R SWG
Sbjct: 289 LHRLFYTLGAGVIEEVRVQRDKGFGFVRYNTHDEAALAIQMGNAQPFLFSRQIRCSWGNK 348
Query: 348 PS 349
P+
Sbjct: 349 PT 350
>AT1G17370.2 | Symbols: UBP1B | UBP1B (OLIGOURIDYLATE BINDING
PROTEIN 1B) | chr1:5951835-5954818 REVERSE
Length = 416
Score = 124 bits (312), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 91/303 (30%), Positives = 152/303 (50%), Gaps = 25/303 (8%)
Query: 68 PDEVRTLWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAE 127
P R++++G++ + E L + FA TG + + K+IR + ++ YGF+ + R A
Sbjct: 50 PSTCRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSS----YGFVHYFDRRSAG 105
Query: 128 RILQTYNGTIMPNGGQNFRLNWATFSAGGERRHDDSPDYTIFVGDLAADVTDYHLTEVFR 187
+ + NG + GQ ++NWA S +R D S + IFVGDL+ +VTD L F
Sbjct: 106 LAILSLNGRHL--FGQPIKVNWAYASG---QREDTSSHFNIFVGDLSPEVTDAMLFTCFS 160
Query: 188 TRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTEMQGVVCSTRPMRIGPAANKN 247
Y + A+V+ D+ T R++G+GFV F ++ + A+ E+ G +R +R A K
Sbjct: 161 V-YPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCN-WATKG 218
Query: 248 LGTGTGTQPKASYQ-----------NSQGPQNENDPNNTTIFVGNLDPNVTDDHLRQVFG 296
+G Q S + G EN+ TT++VGNL P V+ L + F
Sbjct: 219 ATSGEDKQSSDSKSVVELTSGDGKDTTNGEAPENNAQYTTVYVGNLAPEVSQVDLHRHFH 278
Query: 297 LYGDLV--HVKIPQGKRCGFVQFADRSCAEEALRVLN-GTLLGGQNVRLSWGRSPSNKQT 353
G V V++ + K GFV+++ A A+++ N + L G+ ++ SWG P+ T
Sbjct: 279 SLGAGVIEEVRVQRDKGFGFVRYSTHVEAALAIQMGNTHSYLSGRQMKCSWGSKPTPAGT 338
Query: 354 QSD 356
S+
Sbjct: 339 ASN 341
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 83/191 (43%), Gaps = 30/191 (15%)
Query: 161 DDSPDYTIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESE 220
D S +++VG++ VT+ L EVF V+ K++ +S YGFV + D
Sbjct: 49 DPSTCRSVYVGNIHIQVTEPLLQEVFAGT-GPVESCKLIRKEKSS----YGFVHYFDRRS 103
Query: 221 QVRAMTEMQGVVCSTRPMRIGPAANKNLGTGTGTQPKASYQNSQGPQNENDPNNTTIFVG 280
A+ + G +P+++ N +G Q E+ ++ IFVG
Sbjct: 104 AGLAILSLNGRHLFGQPIKV------NWAYASG-------------QREDTSSHFNIFVG 144
Query: 281 NLDPNVTDDHLRQVFGLYGDLVHVKIPQGKRC------GFVQFADRSCAEEALRVLNGTL 334
+L P VTD L F +Y ++ ++ GFV F ++ A+ A+ + G
Sbjct: 145 DLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKW 204
Query: 335 LGGQNVRLSWG 345
LG + +R +W
Sbjct: 205 LGSRQIRCNWA 215
>AT1G17370.1 | Symbols: UBP1B | UBP1B (OLIGOURIDYLATE BINDING
PROTEIN 1B); mRNA 3'-UTR binding | chr1:5951835-5954818
REVERSE
Length = 419
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 91/306 (29%), Positives = 152/306 (49%), Gaps = 28/306 (9%)
Query: 68 PDEVRTLWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAE 127
P R++++G++ + E L + FA TG + + K+IR + ++ YGF+ + R A
Sbjct: 50 PSTCRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSS----YGFVHYFDRRSAG 105
Query: 128 RILQTYNGTIMPNGGQNFRLNWATFSAGGERRHDDSPDYTIFVGDLAADVTDYHLTEVFR 187
+ + NG + GQ ++NWA S +R D S + IFVGDL+ +VTD L F
Sbjct: 106 LAILSLNGRHL--FGQPIKVNWAYASG---QREDTSSHFNIFVGDLSPEVTDAMLFTCFS 160
Query: 188 TRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTEMQGVVCSTRPMRIGPAANKN 247
Y + A+V+ D+ T R++G+GFV F ++ + A+ E+ G +R +R A K
Sbjct: 161 V-YPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCN-WATKG 218
Query: 248 LGTGTGTQPKASYQ--------------NSQGPQNENDPNNTTIFVGNLDPNVTDDHLRQ 293
+G Q S + G EN+ TT++VGNL P V+ L +
Sbjct: 219 ATSGEDKQSSDSKSVVELTSGVSEDGKDTTNGEAPENNAQYTTVYVGNLAPEVSQVDLHR 278
Query: 294 VFGLYGDLV--HVKIPQGKRCGFVQFADRSCAEEALRVLN-GTLLGGQNVRLSWGRSPSN 350
F G V V++ + K GFV+++ A A+++ N + L G+ ++ SWG P+
Sbjct: 279 HFHSLGAGVIEEVRVQRDKGFGFVRYSTHVEAALAIQMGNTHSYLSGRQMKCSWGSKPTP 338
Query: 351 KQTQSD 356
T S+
Sbjct: 339 AGTASN 344
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 83/191 (43%), Gaps = 30/191 (15%)
Query: 161 DDSPDYTIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESE 220
D S +++VG++ VT+ L EVF V+ K++ +S YGFV + D
Sbjct: 49 DPSTCRSVYVGNIHIQVTEPLLQEVF-AGTGPVESCKLIRKEKSS----YGFVHYFDRRS 103
Query: 221 QVRAMTEMQGVVCSTRPMRIGPAANKNLGTGTGTQPKASYQNSQGPQNENDPNNTTIFVG 280
A+ + G +P+++ N +G Q E+ ++ IFVG
Sbjct: 104 AGLAILSLNGRHLFGQPIKV------NWAYASG-------------QREDTSSHFNIFVG 144
Query: 281 NLDPNVTDDHLRQVFGLYGDLVHVKIPQGKRC------GFVQFADRSCAEEALRVLNGTL 334
+L P VTD L F +Y ++ ++ GFV F ++ A+ A+ + G
Sbjct: 145 DLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKW 204
Query: 335 LGGQNVRLSWG 345
LG + +R +W
Sbjct: 205 LGSRQIRCNWA 215
>AT3G14100.1 | Symbols: | oligouridylate-binding protein, putative
| chr3:4673034-4675957 FORWARD
Length = 427
Score = 122 bits (305), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 93/308 (30%), Positives = 154/308 (50%), Gaps = 32/308 (10%)
Query: 68 PDEVRTLWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAE 127
P R++++G++ + E L + F TG + + K+IR ++ YGF+ + R A
Sbjct: 55 PSTCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS----YGFVHYFDRRSAA 110
Query: 128 RILQTYNGTIMPNGGQNFRLNWATFSAGGERRHDDSPDYTIFVGDLAADVTDYHLTEVFR 187
+ + NG + GQ ++NWA ++ G +R D S + IFVGDL+ +VTD L + F
Sbjct: 111 LAILSLNGRHL--FGQPIKVNWA-YATG--QREDTSSHFNIFVGDLSPEVTDATLYQSFS 165
Query: 188 TRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTEMQGVVCSTRPMRIGPAAN-- 245
++S A+V+ D+ T R++G+GFV F ++ + A+ EM G S+R +R A
Sbjct: 166 V-FSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWATKGA 224
Query: 246 --------------KNLGTGTGTQPKASYQNSQGPQNENDPNNTTIFVGNLDPNVTDDHL 291
L TG+ K + N + P EN+ TT++VGNL P VT L
Sbjct: 225 TSGDDKLSSDGKSVVELTTGSSEDGKETL-NEETP--ENNSQFTTVYVGNLAPEVTQLDL 281
Query: 292 RQVFGLYGDLV--HVKIPQGKRCGFVQFADRSCAEEALRVLNGT-LLGGQNVRLSWGRSP 348
+ F G V V++ + K GFV++ A A+++ N L + ++ SWG P
Sbjct: 282 HRYFHALGAGVIEEVRVQRDKGFGFVRYNTHPEAALAIQMGNTQPYLFNRQIKCSWGNKP 341
Query: 349 SNKQTQSD 356
+ T S+
Sbjct: 342 TPPGTASN 349
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 86/191 (45%), Gaps = 30/191 (15%)
Query: 161 DDSPDYTIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESE 220
D S +++VG++ VT+ L E+F T V+ +K++ +S YGFV + D
Sbjct: 54 DPSTCRSVYVGNIHTQVTEPLLQEIF-TSTGPVESSKLIRKDKSS----YGFVHYFDRRS 108
Query: 221 QVRAMTEMQGVVCSTRPMRIGPAANKNLGTGTGTQPKASYQNSQGPQNENDPNNTTIFVG 280
A+ + G +P+++ N TG Q E+ ++ IFVG
Sbjct: 109 AALAILSLNGRHLFGQPIKV------NWAYATG-------------QREDTSSHFNIFVG 149
Query: 281 NLDPNVTDDHLRQVFGLYGDLVHVKIPQGKRC------GFVQFADRSCAEEALRVLNGTL 334
+L P VTD L Q F ++ ++ ++ GFV F ++ A+ A+ +NG
Sbjct: 150 DLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKW 209
Query: 335 LGGQNVRLSWG 345
L + +R +W
Sbjct: 210 LSSRQIRCNWA 220
>AT2G23350.1 | Symbols: PAB4 | PAB4 (POLY(A) BINDING PROTEIN 4); RNA
binding / translation initiation factor |
chr2:9950289-9953121 FORWARD
Length = 662
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 141/292 (48%), Gaps = 20/292 (6%)
Query: 71 VRTLWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERIL 130
V L++ +L +D L++ F+ G + + KV + + QS GYGF++F + A+ +
Sbjct: 133 VGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATD-HMGQSRGYGFVQFDTEDSAKNAI 191
Query: 131 QTYNGTIMPNGGQNFRLNWATFSAGGERRHD-DSPDYT-IFVGDLAADVTDYHLTEVFRT 188
+ NG ++ N Q F F ER D +T ++V +L+ TD L F
Sbjct: 192 EKLNGKVL-NDKQIF---VGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTF-G 246
Query: 189 RYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTEMQGVVCSTRPMRIGPAANKNL 248
+Y S+ A V+ D +++ +GFV F + + RA+ + G + +G A K
Sbjct: 247 QYGSISSAVVMRDG-DGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKK-- 303
Query: 249 GTGTGTQPKASYQNSQGPQNE-NDPNNTTIFVGNLDPNVTDDHLRQVFGLYGDLVHVKI- 306
+ + + S + QG + N + ++V NLD VTD+ LR++F +G + K+
Sbjct: 304 ---SERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVM 360
Query: 307 --PQG--KRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQTQ 354
P G K GFV F+ S A L +NG ++GG+ + ++ + ++ +
Sbjct: 361 RDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRKEERRAK 412
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 128/265 (48%), Gaps = 29/265 (10%)
Query: 73 TLWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQT 132
+L++GDL + + ++ LY F ++ +V+V R+ TN S GYG++ +++ AE+ +Q
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106
Query: 133 YNGTIMPNGGQNFRLNWATFSAGGERRHDDSPDYTIFVGDLAADVTDYHLTEVFRTRYNS 192
N + + G+ R+ +++ + R + +FV +L V + L E F + +
Sbjct: 107 LNYSYL--NGKMIRITYSSRDSSARRSGVGN----LFVKNLDKSVDNKTLHEAF-SGCGT 159
Query: 193 VKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTEMQGVVCSTRPMRIGPAANKNLGTGT 252
+ KV D + +++GYGFV+F E A+ ++ G V + + + +GP K
Sbjct: 160 IVSCKVATDHM-GQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESA 218
Query: 253 GTQPKASYQNSQGPQNENDPNNTTIFVGNLDPNVTDDHLRQVFGLYGDL---VHVKIPQG 309
+ K T ++V NL TDD L+ FG YG + V ++ G
Sbjct: 219 ADKMKF----------------TNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDG 262
Query: 310 K-RC-GFVQFADRSCAEEALRVLNG 332
K RC GFV F + A A+ LNG
Sbjct: 263 KSRCFGFVNFENPEDAARAVEALNG 287
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 90/201 (44%), Gaps = 26/201 (12%)
Query: 167 TIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMT 226
+++VGDL +VTD L + F T V +V D T+ + GYG+V +++ + +AM
Sbjct: 47 SLYVGDLDFNVTDSQLYDYF-TEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQ 105
Query: 227 EMQGVVCSTRPMRIGPAANKNLGTGTGTQPKASYQNSQGPQNENDPNNTTIFVGNLDPNV 286
++ + + +RI ++ + +G +FV NLD +V
Sbjct: 106 KLNYSYLNGKMIRITYSSRDSSARRSGV--------------------GNLFVKNLDKSV 145
Query: 287 TDDHLRQVFGLYGDLVHVKIP-----QGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVR 341
+ L + F G +V K+ Q + GFVQF A+ A+ LNG +L + +
Sbjct: 146 DNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIF 205
Query: 342 LSWGRSPSNKQTQSDPSQWNN 362
+ +++ +D ++ N
Sbjct: 206 VGPFLRKEERESAADKMKFTN 226
>AT1G22760.1 | Symbols: PAB3 | PAB3 (POLY(A) BINDING PROTEIN 3); RNA
binding | chr1:8055588-8058788 FORWARD
Length = 660
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/291 (25%), Positives = 139/291 (47%), Gaps = 36/291 (12%)
Query: 73 TLWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQT 132
+L+ GDL + E +L+ F H + +V+V R++N +S GY ++ F++ A R ++
Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQN-RRSLGYAYINFSNPNDAYRAMEA 108
Query: 133 YNGTIMPNGGQNFRLNWATFSAGGERRHDDSPDYT----IFVGDLAADVTDYHLTEVFRT 188
N T P + R+ + D S + IF+ +L A + + L E F +
Sbjct: 109 LNYT--PLFDRPIRIMLSN--------RDPSTRLSGKGNIFIKNLDASIDNKALFETFSS 158
Query: 189 RYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTEMQGVVCSTRPMRIGPAANKNL 248
+ ++ KV +D +T R+KGYGFV+F E A+ ++ G++ + + + +G +
Sbjct: 159 -FGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRR-- 214
Query: 249 GTGTGTQPKASYQNSQGPQNENDPNNTTIFVGNLDPNVTDDHLRQVFGLYGDLVHVKIPQ 308
Q +A +N+ P+ N ++V NL + +D LR+ FG +G + + +
Sbjct: 215 ------QERARDENTPTPRFTN------VYVKNLPKEIGEDELRKTFGKFGVISSAVVMR 262
Query: 309 GK----RC-GFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQTQ 354
+ RC GFV F A A+ +NG LG + + + S ++ +
Sbjct: 263 DQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEE 313
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 75/296 (25%), Positives = 141/296 (47%), Gaps = 32/296 (10%)
Query: 74 LWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQTY 133
++I +L +D L++ F+ G + + KV + T +S+GYGF++F A+ +
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKL 196
Query: 134 NGTIMPNGGQNFRLNWATFSAGGERRHDD---SPDYT-IFVGDLAADVTDYHLTEVFRTR 189
NG +M N Q F F ER D+ +P +T ++V +L ++ + L + F +
Sbjct: 197 NGMLM-NDKQVF---VGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTF-GK 251
Query: 190 YNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTEMQGVVCSTRPMRIGPAANKN-- 247
+ + A V+ D+ + ++ +GFV F A+ +M G+ + +G A K+
Sbjct: 252 FGVISSAVVMRDQ-SGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSER 310
Query: 248 ---LGTGTGTQPKASYQNSQGPQNENDPNNTTIFVGNLDPNVTDDHLRQVFGLYGDLVHV 304
L + ++ SQG +++ NLD +V D+ L+++F YG++
Sbjct: 311 EEELRRKFEQERINRFEKSQG---------ANLYLKNLDDSVDDEKLKEMFSEYGNVTSS 361
Query: 305 KI---PQGKRCGFVQFADRSCAEEALRVL---NGTLLGGQNVRLSWGRSPSNKQTQ 354
K+ PQG GF F S EEALR L NG ++G + + ++ + +++
Sbjct: 362 KVMLNPQGMSRGF-GFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAH 416
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 86/185 (46%), Gaps = 33/185 (17%)
Query: 164 PDYTIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVR 223
P+ +++ GDL VT+ HL ++F+ N V +V D+ R+ GY ++ F++ ++ R
Sbjct: 47 PNSSLYAGDLDPKVTEAHLFDLFKHVANVV-SVRVCRDQ-NRRSLGYAYINFSNPNDAYR 104
Query: 224 AMTEMQGVVCSTRPMRIGPAANKNLGT---GTGTQPKASYQNSQGPQNENDPNNTTIFVG 280
AM + RP+RI +N++ T G G IF+
Sbjct: 105 AMEALNYTPLFDRPIRIM-LSNRDPSTRLSGKG----------------------NIFIK 141
Query: 281 NLDPNVTDDHLRQVFGLYGDLVHVKIP-----QGKRCGFVQFADRSCAEEALRVLNGTLL 335
NLD ++ + L + F +G ++ K+ + K GFVQF A+ A+ LNG L+
Sbjct: 142 NLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLM 201
Query: 336 GGQNV 340
+ V
Sbjct: 202 NDKQV 206
>AT2G36660.1 | Symbols: PAB7 | PAB7 (POLY(A) BINDING PROTEIN 7); RNA
binding / translation initiation factor |
chr2:15368555-15371477 REVERSE
Length = 609
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 128/271 (47%), Gaps = 31/271 (11%)
Query: 73 TLWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQT 132
+L++GDL + E LY FA L +V++ ++ ++ +S YG+ F SR A ++
Sbjct: 25 SLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEK 84
Query: 133 YNGTIMPNGGQNFRLNWATFSAGGERRHDDSPDYTIFVGDLAADVTDYHLTEVFRTRYNS 192
N +++ G+ R+ W+ + R + +FV +L VT+ L ++F+ ++ +
Sbjct: 85 KNNSLL--NGKMIRVMWSVRAPDARRNGVGN----VFVKNLPESVTNAVLQDMFK-KFGN 137
Query: 193 VKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTEMQGVVCSTRPMRIGPAANKNLGTGT 252
+ KV +++GYGFV+F E A+ + + + + + +G K +
Sbjct: 138 IVSCKVATLE-DGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVG----KFMKKTD 192
Query: 253 GTQPKASYQNSQGPQNENDPNNTTIFVGNLDPNVTDDHLRQVFGLYGDLVHVKIP--QGK 310
+P+ Y N +++ NLD +V++D LR+ F +G +V + I + +
Sbjct: 193 RVKPEEKYTN--------------LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENR 238
Query: 311 RC---GFVQFADRSCAEEALRVLNGTLLGGQ 338
C FV F + A A +NGT G +
Sbjct: 239 LCRGYAFVNFDNPEDARRAAETVNGTKFGSK 269
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 123/289 (42%), Gaps = 16/289 (5%)
Query: 71 VRTLWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERIL 130
V +++ +L + L F G + + KV ++ +S GYGF++F A +
Sbjct: 111 VGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLED-GKSRGYGFVQFEQEDAAHAAI 169
Query: 131 QTYNGTIMPNGGQNFRLNWATFSAGGERRHDDSPDYTIFVGDLAADVTDYHLTEVFRTRY 190
QT N TI+ + + F +R + +++ +L ADV++ L E F +
Sbjct: 170 QTLNSTIVADK----EIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKF-AEF 224
Query: 191 NSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTEMQGVVCSTRPMRIGPAANKNLGT 250
+ + D +GY FV F + + RA + G ++ + +G A K
Sbjct: 225 GKIVSLAIAKDE-NRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKK---- 279
Query: 251 GTGTQPKASYQNSQGPQNENDPNNTTIFVGNLDPNVTDDHLRQVFGLYGDLVHVKIP--- 307
Q + + + + I+V N++ VT++ LR+ F G + K+
Sbjct: 280 AEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDE 339
Query: 308 --QGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQTQ 354
+ K GFV F+ A +A++ +G + G+ + ++ + +++ Q
Sbjct: 340 KGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDRKMQ 388
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 87/190 (45%), Gaps = 14/190 (7%)
Query: 68 PDEVRT-LWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGA 126
P+E T L++ +L + E+ L + FA G++ ++ + +++N GY F+ F + A
Sbjct: 196 PEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDEN-RLCRGYAFVNFDNPEDA 254
Query: 127 ERILQTYNGTIM----------PNGGQNFRLNWATFSAGGERRHDDSPDYTIFVGDLAAD 176
R +T NGT + +L F E + + I+V ++
Sbjct: 255 RRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVA 314
Query: 177 VTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTEMQGVVCSTR 236
VT+ L + F ++ ++ K++ D ++KG+GFV F+ E + A+ G + +
Sbjct: 315 VTEEELRKHF-SQCGTITSTKLMCDE-KGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGK 372
Query: 237 PMRIGPAANK 246
P+ + A K
Sbjct: 373 PLYVAIAQKK 382
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 80/184 (43%), Gaps = 36/184 (19%)
Query: 167 TIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMT 226
+++VGDL VT+ L + F + S+ ++ D + R+ YG+ F + A+
Sbjct: 25 SLYVGDLHPSVTEGILYDAF-AEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIE 83
Query: 227 EMQGVVCSTRPMRI-----GPAANKNLGTGTGTQPKASYQNSQGPQNENDPNNTTIFVGN 281
+ + + + +R+ P A +N G G +FV N
Sbjct: 84 KKNNSLLNGKMIRVMWSVRAPDARRN---GVGN----------------------VFVKN 118
Query: 282 LDPNVTDDHLRQVFGLYGDLVHVKIP-----QGKRCGFVQFADRSCAEEALRVLNGTLLG 336
L +VT+ L+ +F +G++V K+ + + GFVQF A A++ LN T++
Sbjct: 119 LPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVA 178
Query: 337 GQNV 340
+ +
Sbjct: 179 DKEI 182
>AT1G71770.1 | Symbols: PAB5 | PAB5 (POLY(A)-BINDING PROTEIN); RNA
binding | chr1:26994439-26997109 REVERSE
Length = 668
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/287 (23%), Positives = 134/287 (46%), Gaps = 28/287 (9%)
Query: 73 TLWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQT 132
+L++GDL ++E++L F + ++V R+ T++S GY ++ F + A R +++
Sbjct: 46 SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASRAMES 104
Query: 133 YNGTIMPNGGQNFRLNWATFSAGGERRHDDSPDYTIFVGDLAADVTDYHLTEVFRTRYNS 192
N P + R+ + S +F+ +L A + + L E F + + +
Sbjct: 105 LN--YAPIRDRPIRIMLSNRDPSTRL----SGKGNVFIKNLDASIDNKALYETFSS-FGT 157
Query: 193 VKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTEMQGVVCSTRPMRIGPAANKNLGTGT 252
+ KV +D + R+KGYGFV+F E A+ ++ G++ + + + +G +
Sbjct: 158 ILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRR------ 210
Query: 253 GTQPKASYQNSQGPQNENDPNNTTIFVGNLDPNVTDDHLRQVFGLYGDLVHVKIPQ---- 308
Q+ ++ P+ T ++V NL +TDD L++ FG YGD+ + +
Sbjct: 211 --------QDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSG 262
Query: 309 -GKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQTQ 354
+ GFV F A A+ +NG LG + + + S+++ +
Sbjct: 263 NSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEE 309
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/292 (22%), Positives = 138/292 (47%), Gaps = 24/292 (8%)
Query: 74 LWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQTY 133
++I +L +D LY+ F+ G + + KV + +S+GYGF++F A+ +
Sbjct: 134 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKL 192
Query: 134 NGTIMPNGGQNFRLNWATFSAGGERRHDDSPDYT-IFVGDLAADVTDYHLTEVFRTRYNS 192
NG ++ N Q F ++ P +T ++V +L ++TD L + F +Y
Sbjct: 193 NGMLL-NDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTF-GKYGD 250
Query: 193 VKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTEMQGVVCSTRPMRIGPAANKN----- 247
+ A V+ D+ + ++ +GFV F A+ +M G+ + +G A K+
Sbjct: 251 ISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEE 309
Query: 248 LGTGTGTQPKASYQNSQGPQNENDPNNTTIFVGNLDPNVTDDHLRQVFGLYGDLVHVKI- 306
L + + ++ QG + +++ NLD +V D+ L+++F YG++ K+
Sbjct: 310 LRRKFEQERISRFEKLQG---------SNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVM 360
Query: 307 --PQG--KRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQTQ 354
QG + GFV +++ A A++ +NG ++G + + ++ + +Q
Sbjct: 361 MNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEERQAH 412
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 85/185 (45%), Gaps = 33/185 (17%)
Query: 164 PDYTIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVR 223
P+ +++VGDL V + HL ++F + V +V D LT R+ GY +V FA+ + R
Sbjct: 43 PNSSLYVGDLDPSVNESHLLDLF-NQVAPVHNLRVCRD-LTHRSLGYAYVNFANPEDASR 100
Query: 224 AMTEMQGVVCSTRPMRIGPAANKNLGT---GTGTQPKASYQNSQGPQNENDPNNTTIFVG 280
AM + RP+RI +N++ T G G +F+
Sbjct: 101 AMESLNYAPIRDRPIRIM-LSNRDPSTRLSGKG----------------------NVFIK 137
Query: 281 NLDPNVTDDHLRQVFGLYGDLVHVKIP-----QGKRCGFVQFADRSCAEEALRVLNGTLL 335
NLD ++ + L + F +G ++ K+ + K GFVQF A+ A+ LNG LL
Sbjct: 138 NLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLL 197
Query: 336 GGQNV 340
+ V
Sbjct: 198 NDKQV 202
>AT1G49760.1 | Symbols: PAB8 | PAB8 (POLY(A) BINDING PROTEIN 8); RNA
binding / translation initiation factor |
chr1:18420408-18423421 FORWARD
Length = 671
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 136/287 (47%), Gaps = 29/287 (10%)
Query: 73 TLWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQT 132
+L++GDL + ++ L++ F G++ +V+V R+ T +S GYG++ + + A R L
Sbjct: 46 SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 105
Query: 133 YNGTIMPNGGQNFRLNWATFSAGGERRHDDSPDYTIFVGDLAADVTDYHLTEVFRTRYNS 192
N M G+ R+ ++ + S IF+ +L + L E F + +
Sbjct: 106 LN--FMALNGRAIRVMYSVRDPSLRK----SGVGNIFIKNLDKSIDHKALHETF-SAFGP 158
Query: 193 VKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTEMQGVVCSTRPMRIGPAANKNLGTGT 252
+ KV +D + ++KGYGFV++ + A+ ++ G++ + + + +GP +K +
Sbjct: 159 ILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPS 217
Query: 253 GTQPKASYQNSQGPQNENDPNNTTIFVGNLDPNVTDDHLRQVFGLYG---DLVHVKIPQG 309
G + K T ++V NL +++D+ L +VFG +G V ++ +G
Sbjct: 218 GEKVKF----------------TNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEG 261
Query: 310 KR--CGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQTQ 354
K GFV F + A A+ LNG + + + S ++T+
Sbjct: 262 KSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETE 308
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/274 (25%), Positives = 133/274 (48%), Gaps = 22/274 (8%)
Query: 71 VRTLWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERIL 130
V ++I +L +D L++ F+ G + + KV + + QS+GYGF+++ + A+ +
Sbjct: 132 VGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAI 190
Query: 131 QTYNGTIMPNGGQNFR---LNWATFSAGGERRHDDSPDYT-IFVGDLAADVTDYHLTEVF 186
NG ++ N Q + ++ GE+ +T ++V +L+ ++D L +VF
Sbjct: 191 DKLNGMLL-NDKQVYVGPFVHKLQRDPSGEKVK-----FTNVYVKNLSESLSDEELNKVF 244
Query: 187 RTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTEMQGVVCSTRPMRIGPAANK 246
V + V++ ++KG+GFV F + + RA+ + G + +G A K
Sbjct: 245 GEF--GVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKK 302
Query: 247 NLGTGTGTQPKASYQNSQGPQNENDPNNTTIFVGNLDPNVTDDHLRQVFGLYGDLVHVKI 306
+ T+ K ++ S + + + ++V NLD +VTDD LR+ F +G + K+
Sbjct: 303 ---SERETELKQKFEQSLK-EAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKV 358
Query: 307 ---PQG--KRCGFVQFADRSCAEEALRVLNGTLL 335
P G + GFV F+ A A+ +NG ++
Sbjct: 359 MRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMI 392
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 81/183 (44%), Gaps = 13/183 (7%)
Query: 74 LWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQTY 133
+++ +L + + L + F G + T VI +S+G+GF+ F + A R +
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFG-VTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDAL 284
Query: 134 NGTIMPN-----GGQNFRLNWAT-----FSAGGERRHDDSPDYTIFVGDLAADVTDYHLT 183
NG + G + T F + D S ++V +L VTD L
Sbjct: 285 NGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLR 344
Query: 184 EVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTEMQGVVCSTRPMRIGPA 243
E F + ++ KV+ D + ++G GFV F+ E RA+TEM G + T+P+ + A
Sbjct: 345 EHF-APFGTITSCKVMRDP-SGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALA 402
Query: 244 ANK 246
K
Sbjct: 403 QRK 405
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 275 TTIFVGNLDPNVTDDHLRQVFGLYGDLVHVKIPQGKRC------GFVQFADRSCAEEALR 328
T+++VG+LD VTD L + F G +V V++ + G+V +A A AL
Sbjct: 45 TSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALN 104
Query: 329 VLNGTLLGGQNVRLSWG-RSPSNKQT 353
LN L G+ +R+ + R PS +++
Sbjct: 105 ELNFMALNGRAIRVMYSVRDPSLRKS 130
>AT1G34140.1 | Symbols: PAB1 | PAB1 (POLY(A) BINDING PROTEIN 1); RNA
binding / translation initiation factor |
chr1:12433334-12434713 REVERSE
Length = 407
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/295 (24%), Positives = 139/295 (47%), Gaps = 19/295 (6%)
Query: 74 LWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQTY 133
+++ +L +D L F+ G++ + KV R+ + S+GYGF++F S +
Sbjct: 33 VFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDA-SGVSKGYGFVQFYSDLSVYTACNFH 91
Query: 134 NGTIMPNGGQNFRLNWATFSAGGERRHDDSPDYT-IFVGDLAADVTDYHLTEVFRTRYNS 192
NGT++ +N ++ F + G+ D S +T ++V +L TD L +F +
Sbjct: 92 NGTLI----RNQHIHVCPFVSRGQ--WDKSRVFTNVYVKNLVETATDADLKRLF-GEFGE 144
Query: 193 VKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTEMQGVVCSTRPMRIGPAANKNLGTGT 252
+ A V+ D +++ +GFV F V A+ +M GVV + + +G A K T
Sbjct: 145 ITSAVVMKDG-EGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRK---TNR 200
Query: 253 GTQPKASYQNSQGPQNENDPNNTTIFVGNLDPNVTDDHLRQVFGLYGDLVHVKIPQ---- 308
KA ++ + ++ ++V NLD +V + L ++F +G + K+
Sbjct: 201 TEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNG 260
Query: 309 -GKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQTQSDPSQWNN 362
K GFV+F+ A +A+ +NG ++G + + +S + + +Q+NN
Sbjct: 261 ISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLAQCKEQHKLHLQ-TQFNN 314
>AT3G52380.1 | Symbols: PDE322, CP33 | CP33 (PIGMENT DEFECTIVE 322);
RNA binding | chr3:19432597-19433833 FORWARD
Length = 329
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 96/185 (51%), Gaps = 16/185 (8%)
Query: 74 LWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQTY 133
L++G+L Y + + L Q F G + V+++ +K T++S G+GF+ S A+ +Q +
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMF 177
Query: 134 NGTIMPNGGQNFRLNWATFSAGGE------------RRHDDSPDYTIFVGDLAADVTDYH 181
N + + GG+ ++N+ GGE R + DSP + ++ G+L ++T
Sbjct: 178 NSSQI--GGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSP-HKVYAGNLGWNLTSQG 234
Query: 182 LTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTEMQGVVCSTRPMRIG 241
L + F + V GAKV+ +R T R++G+GF+ F A+ M GV R +R+
Sbjct: 235 LKDAFGDQ-PGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLN 293
Query: 242 PAANK 246
A+ +
Sbjct: 294 LASER 298
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 89/202 (44%), Gaps = 23/202 (11%)
Query: 168 IFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTE 227
++VG+L +T L+++F +V ++V D++T R++G+GFV E AM
Sbjct: 118 LYVGNLPYTITSSELSQIF-GEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176
Query: 228 MQGVVCSTRPMRIG----PAANKNLGTGTGTQPK-ASYQNSQGPQNENDPNNTTIFVGNL 282
R +++ P +N T + SY +S P+ ++ GNL
Sbjct: 177 FNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDS--------PHK--VYAGNL 226
Query: 283 DPNVTDDHLRQVFGLYGDLVHVKIP------QGKRCGFVQFADRSCAEEALRVLNGTLLG 336
N+T L+ FG ++ K+ + + GF+ F + AL +NG +
Sbjct: 227 GWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVE 286
Query: 337 GQNVRLSWGRSPSNKQTQSDPS 358
G+ +RL+ S K T S PS
Sbjct: 287 GRALRLNLA-SEREKPTVSPPS 307
>AT3G16380.1 | Symbols: PAB6 | PAB6 (POLY(A) BINDING PROTEIN 6); RNA
binding / translation initiation factor |
chr3:5558682-5560999 REVERSE
Length = 537
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 135/278 (48%), Gaps = 28/278 (10%)
Query: 74 LWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQTY 133
L++ +L + + L + F G + + KV+ + QS+G+GF++F + A
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKVV--EENGQSKGFGFVQFDTEQSAVSARSAL 171
Query: 134 NGTIMPNGGQNFRLNWATFSAGGERR----HDDSPDYTIFVGDLAADVTDYHLTEVFRTR 189
+G+++ +L A F ER + DS + ++V +L VTD L +F ++
Sbjct: 172 HGSMVYGK----KLFVAKFINKDERAAMAGNQDSTN--VYVKNLIETVTDDCLHTLF-SQ 224
Query: 190 YNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTEMQGVVCSTRPMRIGPAANKNLG 249
Y +V V+ D + R++G+GFV F + +AM + G+ ++ + +G A K+
Sbjct: 225 YGTVSSVVVMRDGM-GRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKD-- 281
Query: 250 TGTGTQPKASYQNSQGPQNENDPNN--TTIFVGNLDPNVTDDHLRQVFGLYGDLVHVKIP 307
+ + + PN + ++V NL ++ + LR++FG YG +V K+
Sbjct: 282 -----ERREMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVM 336
Query: 308 -----QGKRCGFVQFADRSCAEEALRVLNGTLLGGQNV 340
+ K GFV F++ +++A R LNG L+ G+ +
Sbjct: 337 CHENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPI 374
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 124/273 (45%), Gaps = 27/273 (9%)
Query: 73 TLWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQT 132
+L++GDL + E L F+ + +V + RN T +S Y ++ F S A +
Sbjct: 22 SLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTR 81
Query: 133 YNGTIMPNGGQNFRLNWATFSAGGERRHDDSPDYTIFVGDLAADVTDYHLTEVFRTRYNS 192
N + + G+ R+ W+ RR + ++V +L + +T L +F + S
Sbjct: 82 LNHSDLK--GKAMRIMWSQRDL-AYRRRTRTGFANLYVKNLDSSITSSCLERMF-CPFGS 137
Query: 193 VKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTEMQGVVCSTRPMRIGPAANKNLGTGT 252
+ KVV + ++KG+GFV+F E V A + + G + + + + NK+
Sbjct: 138 ILSCKVVEE--NGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKD----- 190
Query: 253 GTQPKASYQNSQGPQNENDPNNTTIFVGNLDPNVTDDHLRQVFGLYGDLVHVKIP----- 307
+A+ +Q ++T ++V NL VTDD L +F YG + V +
Sbjct: 191 ---ERAAMAGNQ--------DSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMG 239
Query: 308 QGKRCGFVQFADRSCAEEALRVLNGTLLGGQNV 340
+ + GFV F + A++A+ L G LG + +
Sbjct: 240 RSRGFGFVNFCNPENAKKAMESLCGLQLGSKKL 272
>AT5G50250.1 | Symbols: | 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative | chr5:20469903-20471191 REVERSE
Length = 289
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 92/181 (50%), Gaps = 5/181 (2%)
Query: 68 PDEVRTLWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAE 127
P E L++G+L Y +D L F G + +VI N++T+QS G+GF+ ++ AE
Sbjct: 109 PPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAE 168
Query: 128 RILQTYNGTIMPNGGQNFRLNWATFSAGGERRHDDSPD--YTIFVGDLAADVTDYHLTEV 185
+ ++ +N G+ +N A R D + I+VG+L DV L +
Sbjct: 169 KAVEKFNS--FEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERL 226
Query: 186 FRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTEMQGVVCSTRPMRIGPAAN 245
F + + V A+VV DR T R++G+GFV+ ++E+E A+ + G R +++ A
Sbjct: 227 F-SEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEE 285
Query: 246 K 246
+
Sbjct: 286 R 286
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 89/184 (48%), Gaps = 27/184 (14%)
Query: 168 IFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTE 227
+FVG+L DV L +F + +V+ ++V+ +R T +++G+GFV + E +A+ +
Sbjct: 115 LFVGNLPYDVDSQALAMLFE-QAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173
Query: 228 MQGVVCSTRPMRIGPAANKNLGTGTGTQPK---ASYQNSQGPQNENDPNNTTIFVGNLDP 284
+ R + + AA + G+ QP+ A+++ I+VGNL
Sbjct: 174 FNSFEVNGRRLTVNRAAPR--GSRPERQPRVYDAAFR---------------IYVGNLPW 216
Query: 285 NVTDDHLRQVFGLYGDLVHVKIPQGKRC------GFVQFADRSCAEEALRVLNGTLLGGQ 338
+V L ++F +G +V ++ + GFVQ ++ + A+ L+G L G+
Sbjct: 217 DVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGR 276
Query: 339 NVRL 342
+++
Sbjct: 277 AIKV 280
>AT4G24770.1 | Symbols: ATRBP31, CP31, ATRBP33, RBP31 | RBP31
(31-KDA RNA BINDING PROTEIN); RNA binding / poly(U)
binding | chr4:12766233-12767962 REVERSE
Length = 329
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 91/181 (50%), Gaps = 5/181 (2%)
Query: 68 PDEVRTLWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAE 127
P E L++G+L Y ++ L F G + +VI N+ T+QS G+GF+ +S AE
Sbjct: 146 PSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAE 205
Query: 128 RILQTYNGTIMPNGGQNFRLNWATFSAGGERRHDD--SPDYTIFVGDLAADVTDYHLTEV 185
++ +N + G+ +N A R P + ++VG+L DV + L ++
Sbjct: 206 TAVEKFNRYDL--NGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQL 263
Query: 186 FRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTEMQGVVCSTRPMRIGPAAN 245
F + + V A+VV DR T R++G+GFV +D E A++ + G R +R+ A
Sbjct: 264 F-SEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEE 322
Query: 246 K 246
+
Sbjct: 323 R 323
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 92/186 (49%), Gaps = 21/186 (11%)
Query: 163 SPDYTIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQV 222
S + +FVG+LA DV L +F + +V+ A+V+ +R T +++G+GFV + E
Sbjct: 147 SEEAKLFVGNLAYDVNSQALAMLFE-QAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAE 205
Query: 223 RAMTEMQGVVCSTRPMRIGPAANKNLGTGTGTQPKASYQNSQGPQNENDPNNTTIFVGNL 282
A+ + + R + + AA + G++P+ + P+ +P ++VGNL
Sbjct: 206 TAVEKFNRYDLNGRLLTVNKAAPR------GSRPE------RAPRV-YEPA-FRVYVGNL 251
Query: 283 DPNVTDDHLRQVFGLYGDLVHVKIPQGKRC------GFVQFADRSCAEEALRVLNGTLLG 336
+V + L Q+F +G +V ++ + GFV +D EA+ L+G L
Sbjct: 252 PWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLE 311
Query: 337 GQNVRL 342
G+ +R+
Sbjct: 312 GRAIRV 317
>AT1G60000.1 | Symbols: | 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative |
chr1:22097343-22098205 REVERSE
Length = 258
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 87/182 (47%), Gaps = 4/182 (2%)
Query: 68 PDEVRT-LWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGA 126
P V T L+ G+L Y +D L Q V+V+ N++T QS G+ F+ ++
Sbjct: 80 PAAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDC 139
Query: 127 ERILQTYNGTIMPNGGQNFRLNWATFSAGGERRHDDSPDYTIFVGDLAADVTDYHLTEVF 186
I+ +GT G+ ++N+A + ++ +FVG+L+ VT L F
Sbjct: 140 NIIIDNLDGT--EYLGRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAF 197
Query: 187 RTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTEMQGVVCSTRPMRIGPAANK 246
R V GA+VV D T R++GYGFV ++ ++E A+ + G R +R+ A K
Sbjct: 198 R-ECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQGK 256
Query: 247 NL 248
Sbjct: 257 KF 258
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 86/185 (46%), Gaps = 23/185 (12%)
Query: 168 IFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTE 227
++ G+L +V L ++ + N + +V+ +R T +++G+ FV ++ + +
Sbjct: 87 LYFGNLPYNVDSATLAQIIQDFANP-ELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDN 145
Query: 228 MQGVVCSTRPMRIGPAANKNLGTGTGTQPKASYQNSQGPQNENDPNNTTIFVGNLDPNVT 287
+ G R +++ A +PK + + P+ E+ +FVGNL VT
Sbjct: 146 LDGTEYLGRALKVNFA----------DKPKPN-KEPLYPETEHK-----LFVGNLSWTVT 189
Query: 288 DDHLRQVFGLYGDLVHVKIP------QGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVR 341
+ L F GD+V ++ + + GFV ++ ++ E AL L+G L G+ +R
Sbjct: 190 SESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIR 249
Query: 342 LSWGR 346
++ +
Sbjct: 250 VNLAQ 254
>AT1G29400.2 | Symbols: AML5 | AML5 (ARABIDOPSIS MEI2-LIKE PROTEIN
5); RNA binding | chr1:10290379-10293682 REVERSE
Length = 800
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 102/232 (43%), Gaps = 30/232 (12%)
Query: 117 FLEFTSRAGAERI-LQTYNGTIMPNGGQNFRLNWATFSAGGERRHDDSPDYTIFVGDLAA 175
F + S +G R+ L + G +P F + + GE + + P T+FV ++ +
Sbjct: 122 FRDNLSMSGPPRLSLSSLGGNAIPQ----FNIPNGAGTVAGEHPYGEHPSRTLFVRNINS 177
Query: 176 DVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTEMQGVVCST 235
+V D LT +F +Y ++ T + +G+ + + D AM +Q
Sbjct: 178 NVEDSELTALFE-QYGDIRTLYT-----TCKHRGFVMISYYDIRSARMAMRSLQNKPLRR 231
Query: 236 RPMRIGPAANKNLGTGTGTQPKASYQNSQGPQNENDPNNTTIFVGNLDPNVTDDHLRQVF 295
R + I + + +E D N T+ V NLDP++++D L +F
Sbjct: 232 RKLDI------------------HFSIPKDNPSEKDMNQGTLVVFNLDPSISNDDLHGIF 273
Query: 296 GLYGDLVHVK-IPQGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGR 346
G +G++ ++ P + FV+F D AE AL+ LN + G+ +++ R
Sbjct: 274 GAHGEIKEIRETPHKRHHKFVEFYDVRGAEAALKALNRCEIAGKRIKVEPSR 325
>AT1G29400.1 | Symbols: AML5 | AML5 (ARABIDOPSIS MEI2-LIKE PROTEIN
5); RNA binding | chr1:10290379-10293682 REVERSE
Length = 800
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 102/232 (43%), Gaps = 30/232 (12%)
Query: 117 FLEFTSRAGAERI-LQTYNGTIMPNGGQNFRLNWATFSAGGERRHDDSPDYTIFVGDLAA 175
F + S +G R+ L + G +P F + + GE + + P T+FV ++ +
Sbjct: 122 FRDNLSMSGPPRLSLSSLGGNAIPQ----FNIPNGAGTVAGEHPYGEHPSRTLFVRNINS 177
Query: 176 DVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTEMQGVVCST 235
+V D LT +F +Y ++ T + +G+ + + D AM +Q
Sbjct: 178 NVEDSELTALFE-QYGDIRTLYT-----TCKHRGFVMISYYDIRSARMAMRSLQNKPLRR 231
Query: 236 RPMRIGPAANKNLGTGTGTQPKASYQNSQGPQNENDPNNTTIFVGNLDPNVTDDHLRQVF 295
R + I + + +E D N T+ V NLDP++++D L +F
Sbjct: 232 RKLDI------------------HFSIPKDNPSEKDMNQGTLVVFNLDPSISNDDLHGIF 273
Query: 296 GLYGDLVHVK-IPQGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGR 346
G +G++ ++ P + FV+F D AE AL+ LN + G+ +++ R
Sbjct: 274 GAHGEIKEIRETPHKRHHKFVEFYDVRGAEAALKALNRCEIAGKRIKVEPSR 325
>AT5G09880.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:3081647-3085180 REVERSE
Length = 527
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 97/206 (47%), Gaps = 31/206 (15%)
Query: 156 GERRHDDSPD----------YTIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTS 205
G RRH D D T+F + T+ + E F ++ V+ ++++DR +
Sbjct: 148 GSRRHRDKKDEPEADPERDQRTVFAYQMPLKATERDVYEFF-SKAGKVRDVRLIMDRNSR 206
Query: 206 RTKGYGFVRFADESEQVRAMTEMQGVVCSTRPMRIGPA-ANKNLGTGTGTQPKASYQNSQ 264
R+KG G++ F D A+ + G + +P+ + P+ A KNL T +
Sbjct: 207 RSKGVGYIEFYDVMSVPMAIA-LSGQLFLGQPVMVKPSEAEKNLAQSNSTTVGGT----- 260
Query: 265 GPQNENDPNNTTIFVGNLDPNVTDDHLRQVFGLYGDLVHVKIP------QGKRCGFVQFA 318
P + ++VGNL N+++ LRQ+F +G + V++P Q K GF+QF
Sbjct: 261 ------GPADRKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFV 314
Query: 319 DRSCAEEALRVLNGTL-LGGQNVRLS 343
++ A LNG L + G+ +++S
Sbjct: 315 QLEHSKAAQIALNGKLEIAGRTIKVS 340
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 75/151 (49%), Gaps = 12/151 (7%)
Query: 72 RTLWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERIL- 130
RT++ + E +Y+ F+ G++ V++I ++N+ +S+G G++EF +
Sbjct: 168 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA 227
Query: 131 ---QTYNG---TIMPNGGQNFRLNWATFSAGGERRHDDSPDYTIFVGDLAADVTDYHLTE 184
Q + G + P+ + + + GG D ++VG+L ++++ L +
Sbjct: 228 LSGQLFLGQPVMVKPSEAEKNLAQSNSTTVGG----TGPADRKLYVGNLHFNMSELQLRQ 283
Query: 185 VFRTRYNSVKGAKVVIDRLTSRTKGYGFVRF 215
+F + V+ ++ +D T + KG+GF++F
Sbjct: 284 IFEA-FGPVELVQLPLDPETGQCKGFGFIQF 313
>AT2G33410.1 | Symbols: | heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative | chr2:14163161-14164511
FORWARD
Length = 404
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 75/157 (47%), Gaps = 15/157 (9%)
Query: 74 LWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQTY 133
L+IG + + DEN L + F++ GE+ V V+R K T + G+GF+ F+ A +R+LQ
Sbjct: 8 LFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQDK 67
Query: 134 NGT---------IMPNGGQNFRLNWATFSAGGERRHDDSPDY---TIFVGDLAADVTDYH 181
+ M Q+ TF+A R D + IFVG L +T
Sbjct: 68 HHIDNRDVDVKRAMSREEQSPAGRSGTFNA--SRNFDSGANVRTKKIFVGGLPPALTSDE 125
Query: 182 LTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADE 218
F T Y V A ++ID+ T R +G+GFV F E
Sbjct: 126 FRAYFET-YGPVSDAVIMIDQTTQRPRGFGFVSFDSE 161
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 15/168 (8%)
Query: 168 IFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTE 227
+F+G ++ D TD +L + + + V V+ ++ T R +G+GFV F+D + R + +
Sbjct: 8 LFIGGISWD-TDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQD 66
Query: 228 MQGVVCSTRPMRIGPAANKNLGTGTGTQPKASYQNSQGPQNENDPNNTTIFVGNLDPNVT 287
+ R + + A ++ + G ++ S+ + + IFVG L P +T
Sbjct: 67 KHHI--DNRDVDVKRAMSREEQSPAGR--SGTFNASRNFDSGANVRTKKIFVGGLPPALT 122
Query: 288 DDHLRQVFGLYGDLVHVKI--------PQGKRCGFVQFADRSCAEEAL 327
D R F YG + I P+G GFV F + L
Sbjct: 123 SDEFRAYFETYGPVSDAVIMIDQTTQRPRG--FGFVSFDSEDSVDLVL 168
>AT4G14300.1 | Symbols: | heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative | chr4:8231175-8232781
FORWARD
Length = 411
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 82/185 (44%), Gaps = 15/185 (8%)
Query: 162 DSPDYTIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQ 221
DS +FVG ++ + + L E F T Y V A V+ D+LT R +G+GFV F+D S
Sbjct: 2 DSDQGKLFVGGISWETDEDKLREHF-TNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVL 60
Query: 222 VRAMTEMQGVVCSTRPMRIGPAANKNLGTGTGTQPKASYQNSQGPQNENDPNNTTIFVGN 281
R + E + TR + + A ++ +G + S G N IFVG
Sbjct: 61 DRVLQEKHSI--DTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYN--KTKKIFVGG 116
Query: 282 LDPNVTDDHLRQVFGLYGDLVHVKI--------PQGKRCGFVQFADRSCAEEALRVLNGT 333
L P +TD+ RQ F +YG + V I P+G GFV F + L
Sbjct: 117 LPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRG--FGFVSFDSEDAVDSVLHKTFHD 174
Query: 334 LLGGQ 338
L G Q
Sbjct: 175 LSGKQ 179
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 76/159 (47%), Gaps = 19/159 (11%)
Query: 74 LWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQTY 133
L++G + + DE+ L + F + GE++ V+R+K T + G+GF+ F+ + +R+LQ
Sbjct: 8 LFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQEK 67
Query: 134 NGTIMPN--------------GGQNFRLNWATFSAGGERRHDDSPDYTIFVGDLAADVTD 179
+ G+ LN + S+GG+ + IFVG L +TD
Sbjct: 68 HSIDTREVDVKRAMSREEQQVSGRTGNLN-TSRSSGGDAYNKTK---KIFVGGLPPTLTD 123
Query: 180 YHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADE 218
+ F Y V ++ D+ T+R +G+GFV F E
Sbjct: 124 EEFRQYFEV-YGPVTDVAIMYDQATNRPRGFGFVSFDSE 161
>AT2G16940.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:7349951-7354134 REVERSE
Length = 561
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 100/200 (50%), Gaps = 19/200 (9%)
Query: 167 TIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMT 226
T+F +A T+ + E F +R V+ ++++DR++ R++G G+V F D + V
Sbjct: 183 TVFAYQIALRATERDVYEFF-SRAGKVRDVRIIMDRISRRSRGIGYVEFYD-TMSVPMAI 240
Query: 227 EMQGVVCSTRPMRIGPA-ANKNLGTGTGTQPKASYQNSQGPQNENDPNNTTIFVGNLDPN 285
+ G +P+ + P+ A KNL T A GP + ++VGNL N
Sbjct: 241 ALSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGM--LGPYS---GGARRLYVGNLHIN 295
Query: 286 VTDDHLRQVFGLYGDLVHVKIPQG-----KRCGFVQFADRSCAEEALRVLNGTL-LGGQN 339
+++D LR+VF +G + V++P+ K GFVQFA A AL LNG L + G+
Sbjct: 296 MSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNALN-LNGQLEIAGRA 354
Query: 340 VRLS----WGRSPSNKQTQS 355
+++S P QTQ+
Sbjct: 355 IKVSAVTDQTEVPEAGQTQT 374
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 78/162 (48%), Gaps = 27/162 (16%)
Query: 72 RTLWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEF-------TSRA 124
RT++ + E +Y+ F+ G++ V++I ++ + +S G G++EF + A
Sbjct: 182 RTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAIA 241
Query: 125 GAERILQTYNGTIMPNGGQNFRLNWATFS----------AGGERRHDDSPDYTIFVGDLA 174
+ + L + P+ + + T + +GG RR ++VG+L
Sbjct: 242 LSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARR--------LYVGNLH 293
Query: 175 ADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFA 216
++++ L +VF + + SV+ +V D T KG+GFV+FA
Sbjct: 294 INMSEDDLRKVFES-FGSVELVQVPRDE-TGLCKGFGFVQFA 333
>AT2G37220.1 | Symbols: | 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative |
chr2:15642059-15643410 REVERSE
Length = 289
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 13/202 (6%)
Query: 163 SPDYTIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQV 222
S D +FVG+L +V L ++F + N V+ +V+ D++T R++G+GFV + SE
Sbjct: 88 SADLKLFVGNLPFNVDSAQLAQLFESAGN-VEMVEVIYDKITGRSRGFGFVTMSSVSEVE 146
Query: 223 RAMTEMQGVVCSTRPMRI--GPAANKN---LGTGTGTQPKASYQNSQGPQNENDPNNTTI 277
A + G RP+R+ GP K G + +S G + +
Sbjct: 147 AAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRV 206
Query: 278 FVGNLDPNVTDDHLRQVFGLYGDLVHVKIP------QGKRCGFVQFADRSCAEEALRVLN 331
+VGNL V D L +F G +V ++ + K GFV + + A++ L+
Sbjct: 207 YVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLD 266
Query: 332 GTLLGGQNVRLSWGRS-PSNKQ 352
G L G+ +R+S + P +Q
Sbjct: 267 GADLDGRQIRVSEAEARPPRRQ 288
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 86/191 (45%), Gaps = 24/191 (12%)
Query: 74 LWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQTY 133
L++G+L + +D L Q F G + V+VI +K T +S G+GF+ +S + E Q +
Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152
Query: 134 NGTIMPNGGQNFRLNWATFSAGGERRHDDSPDYT---------------------IFVGD 172
NG + G+ R+N E P + ++VG+
Sbjct: 153 NGYEL--DGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGN 210
Query: 173 LAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTEMQGVV 232
L+ V D L +F + V+ A+V+ DR + R+KG+GFV + E A+ + G
Sbjct: 211 LSWGVDDMALESLFSEQGKVVE-ARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGAD 269
Query: 233 CSTRPMRIGPA 243
R +R+ A
Sbjct: 270 LDGRQIRVSEA 280
>AT4G34110.1 | Symbols: PABP2, PAB2 | PAB2 (POLY(A) BINDING PROTEIN
2); RNA binding | chr4:16337714-16339896 FORWARD
Length = 443
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 87/173 (50%), Gaps = 11/173 (6%)
Query: 168 IFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTE 227
++V +LA TD L F Y + A VV+ ++KG+GFV F + + RA+
Sbjct: 31 VYVKNLAESTTDDDLKNAF-GEYGKITSA-VVMKDGEGKSKGFGFVNFENADDAARAVES 88
Query: 228 MQGVVCSTRPMRIGPAANKNLGTGTGTQPKASYQNSQGPQNENDPNNTTIFVGNLDPNVT 287
+ G + +G A K + T+ + Y+ + + + ++ ++V NLDP+++
Sbjct: 89 LNGHKFDDKEWYVGRAQKK---SERETELRVRYEQNLK-EAADKFQSSNLYVKNLDPSIS 144
Query: 288 DDHLRQVFGLYGDLVHVKI---PQG--KRCGFVQFADRSCAEEALRVLNGTLL 335
D+ L+++F +G + K+ P G K GFV FA A EA+ L+G ++
Sbjct: 145 DEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMI 197
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 85/184 (46%), Gaps = 13/184 (7%)
Query: 74 LWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQTY 133
+++ +L ++ L F G++ + V+++ +S+G+GF+ F + A R +++
Sbjct: 31 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKD-GEGKSKGFGFVNFENADDAARAVESL 89
Query: 134 NGTIMPNG------GQNFRLNWATFSAGGERRHDDSPDY----TIFVGDLAADVTDYHLT 183
NG + Q E+ ++ D ++V +L ++D L
Sbjct: 90 NGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLK 149
Query: 184 EVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTEMQGVVCSTRPMRIGPA 243
E+F + + +V +KV+ D +KG GFV FA E AM+++ G + ++P+ + A
Sbjct: 150 EIF-SPFGTVTSSKVMRDP-NGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIA 207
Query: 244 ANKN 247
K
Sbjct: 208 QRKE 211
>AT4G00830.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:352782-354965 FORWARD
Length = 495
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/300 (20%), Positives = 134/300 (44%), Gaps = 49/300 (16%)
Query: 74 LWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQTY 133
++IG L + E L GE+ V++++++++ S+GY F+ F ++ A++ ++
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEEL 177
Query: 134 NGTIMPNGGQNFRLNWATFSAGGERRHDDSPDYTIFVGDLAADVTDYHLTEVFRTRYNSV 193
+ G+ R + + +F+G++ + T+ +V V
Sbjct: 178 HSKEF--KGKTIRCSLSETKN------------RLFIGNIPKNWTEDEFRKVIEDVGPGV 223
Query: 194 KGAKVVIDRL-TSRTKGYGFVRF-----ADESEQ--VRAMTEMQGVVCSTRPMRIGPAAN 245
+ +++ D T+R +G+ FV + AD S Q + + +++G
Sbjct: 224 ENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEG--------------- 268
Query: 246 KNLGTGTGTQPKASYQNSQGPQNENDPNNTTIFVGNLDPNVTDDHLRQVFGLYGDLVHVK 305
N T T PK+S ++S ++V N+ N + + L+++F +G++ +
Sbjct: 269 -NAPTVTWADPKSSPEHSAAAAQVK-----ALYVKNIPENTSTEQLKELFQRHGEVTKIV 322
Query: 306 IPQGK----RCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQTQSDPSQWN 361
P GK GFV +A+RS A +A++ + GQ + + + + + + DPS ++
Sbjct: 323 TPPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAER--KHDPSSYS 380
>AT4G00830.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:352782-354965 FORWARD
Length = 495
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/300 (20%), Positives = 134/300 (44%), Gaps = 49/300 (16%)
Query: 74 LWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQTY 133
++IG L + E L GE+ V++++++++ S+GY F+ F ++ A++ ++
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEEL 177
Query: 134 NGTIMPNGGQNFRLNWATFSAGGERRHDDSPDYTIFVGDLAADVTDYHLTEVFRTRYNSV 193
+ G+ R + + +F+G++ + T+ +V V
Sbjct: 178 HSKEF--KGKTIRCSLSETKN------------RLFIGNIPKNWTEDEFRKVIEDVGPGV 223
Query: 194 KGAKVVIDRL-TSRTKGYGFVRF-----ADESEQ--VRAMTEMQGVVCSTRPMRIGPAAN 245
+ +++ D T+R +G+ FV + AD S Q + + +++G
Sbjct: 224 ENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEG--------------- 268
Query: 246 KNLGTGTGTQPKASYQNSQGPQNENDPNNTTIFVGNLDPNVTDDHLRQVFGLYGDLVHVK 305
N T T PK+S ++S ++V N+ N + + L+++F +G++ +
Sbjct: 269 -NAPTVTWADPKSSPEHSAAAAQVK-----ALYVKNIPENTSTEQLKELFQRHGEVTKIV 322
Query: 306 IPQGK----RCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQTQSDPSQWN 361
P GK GFV +A+RS A +A++ + GQ + + + + + + DPS ++
Sbjct: 323 TPPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAER--KHDPSSYS 380
>AT2G42890.1 | Symbols: AML2 | AML2; RNA binding |
chr2:17857154-17861282 FORWARD
Length = 843
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 95/210 (45%), Gaps = 38/210 (18%)
Query: 157 ERRHDDSPDYTIFVGDLAADVTDYHLTEVF------RTRYNSVKGAKVVIDRLTSRTKGY 210
E + + P T+FV ++ + V D L+ +F R+ Y + K ++G+
Sbjct: 189 EHPNGEHPSRTLFVRNINSSVEDSELSALFEPFGEIRSLYTACK------------SRGF 236
Query: 211 GFVRFADESEQVRAMTEMQGVVCSTRPMRIGPAANKNLGTGTGTQPKASYQNSQGPQNEN 270
+ + D AM +Q + R + I + K + P +E
Sbjct: 237 VMISYYDIRAAHAAMRALQNTLLRKRTLDIHFSIPK-----------------ENP-SEK 278
Query: 271 DPNNTTIFVGNLDPNVTDDHLRQVFGLYGDLVHVK-IPQGKRCGFVQFADRSCAEEALRV 329
D N T+ + N+D V++D L Q+FG YG++ ++ P + F+++ D AE AL+
Sbjct: 279 DMNQGTLVIFNVDTTVSNDELLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAETALKA 338
Query: 330 LNGTLLGGQNVRLSWGRSPSNKQTQSDPSQ 359
LN + +GG+ ++L R P + S PSQ
Sbjct: 339 LNRSEIGGKCIKLELSR-PGGARRLSVPSQ 367
>AT2G42890.3 | Symbols: AML2 | AML2 | chr2:17857709-17861282 FORWARD
Length = 830
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 94/204 (46%), Gaps = 26/204 (12%)
Query: 157 ERRHDDSPDYTIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFA 216
E + + P T+FV ++ + V D L+ +F + ++ +++G+ + +
Sbjct: 176 EHPNGEHPSRTLFVRNINSSVEDSELSALFEP-FGEIRSLYTAC-----KSRGFVMISYY 229
Query: 217 DESEQVRAMTEMQGVVCSTRPMRIGPAANKNLGTGTGTQPKASYQNSQGPQNENDPNNTT 276
D AM +Q + R + I + K + P +E D N T
Sbjct: 230 DIRAAHAAMRALQNTLLRKRTLDIHFSIPK-----------------ENP-SEKDMNQGT 271
Query: 277 IFVGNLDPNVTDDHLRQVFGLYGDLVHVK-IPQGKRCGFVQFADRSCAEEALRVLNGTLL 335
+ + N+D V++D L Q+FG YG++ ++ P + F+++ D AE AL+ LN + +
Sbjct: 272 LVIFNVDTTVSNDELLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAETALKALNRSEI 331
Query: 336 GGQNVRLSWGRSPSNKQTQSDPSQ 359
GG+ ++L R P + S PSQ
Sbjct: 332 GGKCIKLELSR-PGGARRLSVPSQ 354
>AT2G42890.2 | Symbols: AML2 | AML2; RNA binding |
chr2:17857709-17861282 FORWARD
Length = 830
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 94/204 (46%), Gaps = 26/204 (12%)
Query: 157 ERRHDDSPDYTIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFA 216
E + + P T+FV ++ + V D L+ +F + ++ +++G+ + +
Sbjct: 176 EHPNGEHPSRTLFVRNINSSVEDSELSALFEP-FGEIRSLYTAC-----KSRGFVMISYY 229
Query: 217 DESEQVRAMTEMQGVVCSTRPMRIGPAANKNLGTGTGTQPKASYQNSQGPQNENDPNNTT 276
D AM +Q + R + I + K + P +E D N T
Sbjct: 230 DIRAAHAAMRALQNTLLRKRTLDIHFSIPK-----------------ENP-SEKDMNQGT 271
Query: 277 IFVGNLDPNVTDDHLRQVFGLYGDLVHVK-IPQGKRCGFVQFADRSCAEEALRVLNGTLL 335
+ + N+D V++D L Q+FG YG++ ++ P + F+++ D AE AL+ LN + +
Sbjct: 272 LVIFNVDTTVSNDELLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAETALKALNRSEI 331
Query: 336 GGQNVRLSWGRSPSNKQTQSDPSQ 359
GG+ ++L R P + S PSQ
Sbjct: 332 GGKCIKLELSR-PGGARRLSVPSQ 354
>AT2G18510.1 | Symbols: EMB2444 | EMB2444 (EMBRYO DEFECTIVE 2444);
RNA binding | chr2:8038636-8040599 REVERSE
Length = 363
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 81/175 (46%), Gaps = 7/175 (4%)
Query: 73 TLWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQT 132
T+++G L + E L++ F G + V V +++ TN + YGF+E+ S A+ ++
Sbjct: 26 TVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKV 85
Query: 133 YNGTIMPNGGQNFRLNWATFSAGGERRHDDSPDYTIFVGDLAADVTDYHLTEVFRTRYNS 192
N ++ G+ R+N A+ + + +F+G+L DV + L + F
Sbjct: 86 LN--MIKLHGKPIRVNKAS-----QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVI 138
Query: 193 VKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTEMQGVVCSTRPMRIGPAANKN 247
K++ D T ++G+GF+ + A+ M G S R + + A K+
Sbjct: 139 ASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYKKD 193
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/197 (20%), Positives = 83/197 (42%), Gaps = 29/197 (14%)
Query: 156 GERRHDDSPDYTIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRF 215
G+ + + D T++VG L A +++ L E+F + V V DR+T+ + YGF+ +
Sbjct: 15 GQHSAERNQDATVYVGGLDAQLSEELLWELF-VQAGPVVNVYVPKDRVTNLHQNYGFIEY 73
Query: 216 ADESEQVRAMTEMQGVVCSTRPMRIGPAANKNLGTGTGTQPKASYQNSQGPQNENDPNNT 275
E + A+ + + +P+R+ A+ G
Sbjct: 74 RSEEDADYAIKVLNMIKLHGKPIRVNKASQDKKSLDVG---------------------A 112
Query: 276 TIFVGNLDPNVTDDHLRQVFGLYGDLVH----VKIPQ---GKRCGFVQFADRSCAEEALR 328
+F+GNLDP+V + L F +G + ++ P + GF+ + ++ A+
Sbjct: 113 NLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIE 172
Query: 329 VLNGTLLGGQNVRLSWG 345
+ G L + + +S+
Sbjct: 173 SMTGQYLSNRQITVSYA 189
>AT2G44710.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:18439977-18443704 FORWARD
Length = 809
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/272 (22%), Positives = 113/272 (41%), Gaps = 38/272 (13%)
Query: 74 LWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQTY 133
+++G L E L + F H GE+ V++++N T +S+G FL F + A+R ++
Sbjct: 216 IFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKEL 275
Query: 134 NGTIMPNGGQNFRLNWATFSAGGERRHDDSPDYTIFVGDLAADVTDYHLTEVFRTR-YNS 192
++ N + T S + T+FVG++ T L E + +
Sbjct: 276 KSPMI-----NGKKCGVTASQDND---------TLFVGNICKIWTPEALREKLKHYGVEN 321
Query: 193 VKGAKVVIDR-LTSRTKGYGFVRFADESEQVRAMTEMQGVVCSTRPMRIGPAANKNLGTG 251
+ +V D + +GY F+ F+ S+ + A + K++ G
Sbjct: 322 MDDITLVEDSNNVNMNRGYAFLEFSSRSDAMDAHKRL---------------VKKDVMFG 366
Query: 252 TGTQPKASYQNS-QGPQNENDPNNTTIFVGNLDPNVTDDHLRQVFGLYGDLVHVKI---- 306
K S+ +S ++E TIF+ L P+ ++ +R + YG L V++
Sbjct: 367 VEKPAKVSFTDSFLDLEDEIMAQVKTIFIDGLLPSWNEERVRDLLKPYGKLEKVELARNM 426
Query: 307 PQGKR--CGFVQFADRSCAEEALRVLNGTLLG 336
P +R GFV F A + +N + LG
Sbjct: 427 PSARRKDFGFVTFDTHEAAVSCAKFINNSELG 458
>AT3G13224.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:4254855-4256628 FORWARD
Length = 358
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 75/149 (50%), Gaps = 7/149 (4%)
Query: 74 LWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQTY 133
++IG L + F GE+ ++R+++T Q G+GF+ F + +++++
Sbjct: 21 IFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED- 79
Query: 134 NGTIMPNGGQNFRLNWATFSAGGERRHDDSPDYTIFVGDLAADVTDYHLTEVFRTRYNSV 193
T + NG Q + G + D IFVG + + VT+ L + F +Y +V
Sbjct: 80 --THVINGKQ-VEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFF-AKYGNV 135
Query: 194 KGAKVVIDRLTSRTKGYGFVRFADESEQV 222
+V+ D T+R++G+GFV F +SE+V
Sbjct: 136 VEHQVIRDHETNRSRGFGFVIF--DSEEV 162
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 81/197 (41%), Gaps = 26/197 (13%)
Query: 168 IFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTE 227
IF+G L D T+ + F +Y + + ++ DR T + +G+GF+ FAD S + + +
Sbjct: 21 IFIGGLHKDTTNTVFNKHF-GKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 228 MQGVVCSTRPMRIGPAANKNLGTGTGTQPKASYQNSQGPQNENDPNNTTIFVGNLDPNVT 287
V + + + I K G G Q K D IFVG + VT
Sbjct: 80 TH--VINGKQVEIKRTIPKGAG---GNQSK-------------DIKTKKIFVGGIPSTVT 121
Query: 288 DDHLRQVFGLYGDLVHVKIP------QGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVR 341
+D L+ F YG++V ++ + + GFV F +E L N + V
Sbjct: 122 EDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVE 181
Query: 342 LSWGRSPSNKQTQSDPS 358
+ P +S PS
Sbjct: 182 IKKAE-PKKSLNRSPPS 197
>AT3G04500.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:1212071-1213801 REVERSE
Length = 245
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 165 DYTIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRA 224
DY +F GDL +V D L++ F R+ + AKV+ D+ T +TKGYGFV F + ++ A
Sbjct: 136 DYRLFCGDLGNEVNDDVLSKAF-ARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAA 194
Query: 225 MTEMQGVVCSTRPMRI 240
+ EM G RP+++
Sbjct: 195 LKEMNGKYVGNRPIKL 210
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%)
Query: 68 PDEVRTLWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAE 127
P+ L+ GDL ++++ L + FA KVIR+K T +++GYGF+ F + A
Sbjct: 133 PENDYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLA 192
Query: 128 RILQTYNGTIMPNGGQNFR 146
L+ NG + N R
Sbjct: 193 AALKEMNGKYVGNRPIKLR 211
>AT1G53650.2 | Symbols: CID8 | CID8; RNA binding |
chr1:20032930-20034911 REVERSE
Length = 308
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 112/264 (42%), Gaps = 42/264 (15%)
Query: 107 KNTNQSEGYGFLEFTSRAGAERILQTYNGTIMPNGGQNFRLNWATFSAGGERRHDDSPDY 166
+NTNQS+ + S ++ YN G+ RL A + +DS
Sbjct: 73 RNTNQSDDFVIAIKPSGEDNKKRRNNYNQ------GRRVRLPGRASKA----QREDSIRR 122
Query: 167 TIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMT 226
T++V D+ VT+ L +F + V ++ D + + FV F+D+ + R+
Sbjct: 123 TVYVSDIDQSVTEEGLAGLFSS-CGQVVDCRICGD--PNSVLRFAFVEFSDD-QGARSAL 178
Query: 227 EMQGVVCSTRPMRIGPAANKNLGTGTGTQPKASYQNSQGPQNENDPNNTTIFVGNLDPNV 286
+ G + P+R+ P+ L P++ ++E + + TI+ N+D N
Sbjct: 179 SLGGTMIGYYPVRVLPSKTAILPVNPTFLPRS--------EDEREMCSRTIYCTNVDKNA 230
Query: 287 TDDHLRQVFG----------LYGDLVHVKIPQGKRCGFVQFADRSCAEEALRVLN--GTL 334
T+D + F L GD VH R FV+FA AE A+ LN G +
Sbjct: 231 TEDDVNTFFQSACGEVTRLRLLGDQVH-----STRIAFVEFA---MAESAVAALNCSGIV 282
Query: 335 LGGQNVRLSWGRSPSNKQTQSDPS 358
LG Q +R+S ++P + PS
Sbjct: 283 LGSQPIRVSPSKTPVRSRITRSPS 306
>AT4G16280.3 | Symbols: FCA | FCA; RNA binding |
chr4:9208580-9214428 REVERSE
Length = 533
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 103/222 (46%), Gaps = 29/222 (13%)
Query: 74 LWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQT- 132
L++G + E + F G + V +I++K T Q +G F+++ + A+R ++
Sbjct: 122 LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRAL 181
Query: 133 YNGTIMPNGGQNFRLNWATFSAGGERRHDDSPDYTIFVGDLAADVTDYHLTEVFRTRYNS 192
+N +P G ++ +A GER + ++ +FVG L T+ + E+F ++
Sbjct: 182 HNQITLPGGTGPVQVRYAD----GERERIGTLEFKLFVGSLNKQATEKEVEEIF-LQFGH 236
Query: 193 VKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTEMQG-----------VVCSTRPMRIG 241
V+ ++ D +++G GFV+++ + + A+ + G +V P R
Sbjct: 237 VEDVYLMRDEY-RQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPK 295
Query: 242 PAANKN------LGTG-----TGTQPKASYQNSQGPQNENDP 272
P ++ LG+G +G +P +++ +S G + +P
Sbjct: 296 PGESREMAPPVGLGSGPRFQASGPRPTSNFGDSSGDVSHTNP 337
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 77/178 (43%), Gaps = 23/178 (12%)
Query: 161 DDSPDYTIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESE 220
D S +FVG + T+ + F N ++ A ++ D+ T + +G FV++A +
Sbjct: 115 DRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVA-LIKDKRTGQQQGCCFVKYATSKD 173
Query: 221 QVRAMTEMQGVVCSTRPMRIGPAANKNLGTGTGTQPKASYQNSQGPQNENDPNNTTIFVG 280
RA+ + + L GTG + + G + +FVG
Sbjct: 174 ADRAIRALHNQIT--------------LPGGTG---PVQVRYADGERERIGTLEFKLFVG 216
Query: 281 NLDPNVTDDHLRQVFGLYGDLVHVKI-----PQGKRCGFVQFADRSCAEEALRVLNGT 333
+L+ T+ + ++F +G + V + Q + CGFV+++ + A A+ LNGT
Sbjct: 217 SLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGT 274
>AT4G16280.2 | Symbols: FCA | FCA; RNA binding |
chr4:9207180-9214428 REVERSE
Length = 747
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 103/222 (46%), Gaps = 29/222 (13%)
Query: 74 LWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQT- 132
L++G + E + F G + V +I++K T Q +G F+++ + A+R ++
Sbjct: 122 LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRAL 181
Query: 133 YNGTIMPNGGQNFRLNWATFSAGGERRHDDSPDYTIFVGDLAADVTDYHLTEVFRTRYNS 192
+N +P G ++ +A GER + ++ +FVG L T+ + E+F ++
Sbjct: 182 HNQITLPGGTGPVQVRYAD----GERERIGTLEFKLFVGSLNKQATEKEVEEIF-LQFGH 236
Query: 193 VKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTEMQG-----------VVCSTRPMRIG 241
V+ ++ D +++G GFV+++ + + A+ + G +V P R
Sbjct: 237 VEDVYLMRDEY-RQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPK 295
Query: 242 PAANKN------LGTG-----TGTQPKASYQNSQGPQNENDP 272
P ++ LG+G +G +P +++ +S G + +P
Sbjct: 296 PGESREMAPPVGLGSGPRFQASGPRPTSNFGDSSGDVSHTNP 337
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 77/178 (43%), Gaps = 23/178 (12%)
Query: 161 DDSPDYTIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESE 220
D S +FVG + T+ + F N ++ A ++ D+ T + +G FV++A +
Sbjct: 115 DRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVA-LIKDKRTGQQQGCCFVKYATSKD 173
Query: 221 QVRAMTEMQGVVCSTRPMRIGPAANKNLGTGTGTQPKASYQNSQGPQNENDPNNTTIFVG 280
RA+ + + L GTG + + G + +FVG
Sbjct: 174 ADRAIRALHNQIT--------------LPGGTG---PVQVRYADGERERIGTLEFKLFVG 216
Query: 281 NLDPNVTDDHLRQVFGLYGDLVHVKI-----PQGKRCGFVQFADRSCAEEALRVLNGT 333
+L+ T+ + ++F +G + V + Q + CGFV+++ + A A+ LNGT
Sbjct: 217 SLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNGT 274
>AT2G42240.1 | Symbols: | nucleic acid binding |
chr2:17603922-17606050 FORWARD
Length = 292
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 54/112 (48%), Gaps = 12/112 (10%)
Query: 242 PAANKNLGTGTGTQPKASYQNSQGPQNENDPNNTTIFVGNLDPNVTDDHLRQVFGLYGDL 301
PA ++ + G P S+ P DP T+F+ N+ PN T+ L QVF
Sbjct: 178 PAQSQGIANVAGRAP-----TSRKPSKAADPC-PTLFIANMGPNCTEAELIQVFSRCRGF 231
Query: 302 VHVKI--PQGKRCGFVQFADRSCAEEALRVLNGTL----LGGQNVRLSWGRS 347
+ +KI G FV F D SC+ EAL L GT+ L G+ +RL + RS
Sbjct: 232 LKLKIQGTYGTPVAFVDFQDVSCSSEALHTLQGTVLYSSLTGEVLRLQYARS 283
>AT2G43410.1 | Symbols: FPA | FPA; RNA binding |
chr2:18033474-18038066 REVERSE
Length = 858
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 87/188 (46%), Gaps = 35/188 (18%)
Query: 168 IFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTS-RTKGYGFVRFADESEQVRAMT 226
++VG L + T+ LTE+F RY IDR+T ++G+ F+ + E V A
Sbjct: 20 LWVGSLTPETTESDLTELF-GRYGD-------IDRITVYSSRGFAFIYYRHVEEAVAAKE 71
Query: 227 EMQGVVCSTRPMRIGPAANKNLGTGTGTQPKASYQNSQGPQNENDPNNTTIFVGNLDPNV 286
+QG AN N G+Q K Y P +++VG + PNV
Sbjct: 72 ALQG-------------ANLN-----GSQIKIEYARPAKP-------CKSLWVGGIGPNV 106
Query: 287 TDDHLRQVFGLYGDLVHVKIPQGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGR 346
+ D L + F +G + + + ++ F+ + + A +A + +NG +GG +R+ + R
Sbjct: 107 SKDDLEEEFSKFGKIEDFRFLRERKTAFIDYYEMDDALQA-KSMNGKPMGGSFLRVDFLR 165
Query: 347 SPSNKQTQ 354
S + K+ Q
Sbjct: 166 SQAPKKEQ 173
>AT2G43410.4 | Symbols: FPA | FPA | chr2:18033474-18038066 REVERSE
Length = 901
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 87/188 (46%), Gaps = 35/188 (18%)
Query: 168 IFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTS-RTKGYGFVRFADESEQVRAMT 226
++VG L + T+ LTE+F RY IDR+T ++G+ F+ + E V A
Sbjct: 20 LWVGSLTPETTESDLTELF-GRYGD-------IDRITVYSSRGFAFIYYRHVEEAVAAKE 71
Query: 227 EMQGVVCSTRPMRIGPAANKNLGTGTGTQPKASYQNSQGPQNENDPNNTTIFVGNLDPNV 286
+QG AN N G+Q K Y P +++VG + PNV
Sbjct: 72 ALQG-------------ANLN-----GSQIKIEYARPAKP-------CKSLWVGGIGPNV 106
Query: 287 TDDHLRQVFGLYGDLVHVKIPQGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGR 346
+ D L + F +G + + + ++ F+ + + A +A + +NG +GG +R+ + R
Sbjct: 107 SKDDLEEEFSKFGKIEDFRFLRERKTAFIDYYEMDDALQA-KSMNGKPMGGSFLRVDFLR 165
Query: 347 SPSNKQTQ 354
S + K+ Q
Sbjct: 166 SQAPKKEQ 173
>AT2G43410.3 | Symbols: FPA | FPA | chr2:18033474-18038066 REVERSE
Length = 901
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 87/188 (46%), Gaps = 35/188 (18%)
Query: 168 IFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTS-RTKGYGFVRFADESEQVRAMT 226
++VG L + T+ LTE+F RY IDR+T ++G+ F+ + E V A
Sbjct: 20 LWVGSLTPETTESDLTELF-GRYGD-------IDRITVYSSRGFAFIYYRHVEEAVAAKE 71
Query: 227 EMQGVVCSTRPMRIGPAANKNLGTGTGTQPKASYQNSQGPQNENDPNNTTIFVGNLDPNV 286
+QG AN N G+Q K Y P +++VG + PNV
Sbjct: 72 ALQG-------------ANLN-----GSQIKIEYARPAKP-------CKSLWVGGIGPNV 106
Query: 287 TDDHLRQVFGLYGDLVHVKIPQGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGR 346
+ D L + F +G + + + ++ F+ + + A +A + +NG +GG +R+ + R
Sbjct: 107 SKDDLEEEFSKFGKIEDFRFLRERKTAFIDYYEMDDALQA-KSMNGKPMGGSFLRVDFLR 165
Query: 347 SPSNKQTQ 354
S + K+ Q
Sbjct: 166 SQAPKKEQ 173
>AT2G43410.2 | Symbols: FPA | FPA | chr2:18033474-18038066 REVERSE
Length = 901
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 87/188 (46%), Gaps = 35/188 (18%)
Query: 168 IFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTS-RTKGYGFVRFADESEQVRAMT 226
++VG L + T+ LTE+F RY IDR+T ++G+ F+ + E V A
Sbjct: 20 LWVGSLTPETTESDLTELF-GRYGD-------IDRITVYSSRGFAFIYYRHVEEAVAAKE 71
Query: 227 EMQGVVCSTRPMRIGPAANKNLGTGTGTQPKASYQNSQGPQNENDPNNTTIFVGNLDPNV 286
+QG AN N G+Q K Y P +++VG + PNV
Sbjct: 72 ALQG-------------ANLN-----GSQIKIEYARPAKP-------CKSLWVGGIGPNV 106
Query: 287 TDDHLRQVFGLYGDLVHVKIPQGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGR 346
+ D L + F +G + + + ++ F+ + + A +A + +NG +GG +R+ + R
Sbjct: 107 SKDDLEEEFSKFGKIEDFRFLRERKTAFIDYYEMDDALQA-KSMNGKPMGGSFLRVDFLR 165
Query: 347 SPSNKQTQ 354
S + K+ Q
Sbjct: 166 SQAPKKEQ 173
>AT1G53650.1 | Symbols: CID8 | CID8; RNA binding / protein binding |
chr1:20032930-20034911 REVERSE
Length = 314
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 94/212 (44%), Gaps = 32/212 (15%)
Query: 159 RHDDSPDYTIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADE 218
+ +DS T++V D+ VT+ L +F + V ++ D + + FV F+D+
Sbjct: 121 QREDSIRRTVYVSDIDQSVTEEGLAGLFSS-CGQVVDCRICGD--PNSVLRFAFVEFSDD 177
Query: 219 SEQVRAMTEMQGVVCSTRPMRIGPAANKNLGTGTGTQPKASYQNSQGPQNENDPNNTTIF 278
+ R+ + G + P+R+ P+ L P++ ++E + + TI+
Sbjct: 178 -QGARSALSLGGTMIGYYPVRVLPSKTAILPVNPTFLPRS--------EDEREMCSRTIY 228
Query: 279 VGNLDPNVTDDHLRQVFG----------LYGDLVHVKIPQGKRCGFVQFADRSCAEEALR 328
N+D N T+D + F L GD VH R FV+FA AE A+
Sbjct: 229 CTNVDKNATEDDVNTFFQSACGEVTRLRLLGDQVH-----STRIAFVEFA---MAESAVA 280
Query: 329 VLN--GTLLGGQNVRLSWGRSPSNKQTQSDPS 358
LN G +LG Q +R+S ++P + PS
Sbjct: 281 ALNCSGIVLGSQPIRVSPSKTPVRSRITRSPS 312
>AT5G41690.1 | Symbols: | RNA binding | chr5:16687354-16691417
REVERSE
Length = 567
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 79/332 (23%), Positives = 125/332 (37%), Gaps = 72/332 (21%)
Query: 72 RTLWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQ 131
+TL++ +L Y + F GE+ V++I N + G GF+EF S AE LQ
Sbjct: 68 KTLFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLK-GKLVGCGFVEFASVNEAEEALQ 126
Query: 132 TYNGTIMPNGG-------------------------QNFRLNWATFSAGGERRHDDSPDY 166
NG + N +++R + + R +S +
Sbjct: 127 KKNGECLDNNKIFLDVANKKATYLPPKYCIDHKVWDKDYR-RLESHPIEEDERPPNSVEE 185
Query: 167 TIFVGDLA-----ADVTDYHLTEVFRTRYNSVKGAKVVIDRLTS----RTKGYGFVRFAD 217
+FV +L+ +D+ D+ +N V +VV RL + GYGFV FA
Sbjct: 186 VLFVANLSPQTKISDIFDF---------FNCV--GEVVSIRLMVNHEGKHVGYGFVEFAS 234
Query: 218 ESEQVRAMTEMQGV----------VCSTRPMRIGPAANKNLGTGTGTQPKASYQNSQGPQ 267
E +A+ G V T P GP NL + ++ +
Sbjct: 235 ADETKKALENKNGEYLHDHKIFIDVAKTAPYPPGPKY--NLVEKLCYEDYLRRESLPIDE 292
Query: 268 NENDPN--------NTTIFVGNLDPNVTDDHLRQVFGLYGDLVHVKI---PQGKR--CGF 314
+E P T+FV +L H+ F G++VHV++ GK C F
Sbjct: 293 DETPPEFVEAVGVRKKTLFVAHLSRKTEITHIINFFKDVGEVVHVRLILNHTGKHVGCAF 352
Query: 315 VQFADRSCAEEALRVLNGTLLGGQNVRLSWGR 346
V+F + A+ AL NG L + L +
Sbjct: 353 VEFGSANEAKMALETKNGEYLNDCKIFLEVAK 384
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 65/326 (19%), Positives = 122/326 (37%), Gaps = 59/326 (18%)
Query: 73 TLWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQT 132
L++ +L + ++ F GE+ +++++ N + + GYGF+EF S ++ L+
Sbjct: 186 VLFVANLSPQTKISDIFDFFNCVGEVVSIRLMVN-HEGKHVGYGFVEFASADETKKALEN 244
Query: 133 YNGTIMPNG--------------GQNFRLNWATFSAGGERRH------DDSP-------- 164
NG + + G + L RR D++P
Sbjct: 245 KNGEYLHDHKIFIDVAKTAPYPPGPKYNLVEKLCYEDYLRRESLPIDEDETPPEFVEAVG 304
Query: 165 --DYTIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQV 222
T+FV L+ H+ F+ V +++++ T + G FV F +E
Sbjct: 305 VRKKTLFVAHLSRKTEITHIINFFKD-VGEVVHVRLILNH-TGKHVGCAFVEFGSANEAK 362
Query: 223 RAMTEMQG-------VVCSTRPMRIGPAANKNLGTGTGTQPKASYQNSQGPQNENDP--- 272
A+ G + M P + + ++ +NE +
Sbjct: 363 MALETKNGEYLNDCKIFLEVAKMVPYPPPKYCIHHKVWYEDYLRRESLLIEENETEEGLD 422
Query: 273 -----------NNTTIFVGNLDPNVTDDHLRQVFGLYGDLVHVKIPQGKR-----CGFVQ 316
T+FV NL P H+ + F ++V V++ R CGFV+
Sbjct: 423 DTPALVEEFAVRKKTLFVANLSPRTKISHIIKFFKDVAEVVRVRLIVNHRGEHVGCGFVE 482
Query: 317 FADRSCAEEALRVLNGTLLGGQNVRL 342
FA + A++AL+ +NG L + + L
Sbjct: 483 FASVNEAQKALQKMNGENLRSREIFL 508
>AT4G13850.3 | Symbols: GR-RBP2, GRP2, ATGRP2 | ATGRP2 (GLYCINE-RICH
RNA-BINDING PROTEIN 2) | chr4:8021310-8022061 FORWARD
Length = 144
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 168 IFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTE 227
+F+G L+ D L + F + V AKV++DR T R++G+GFV F DE A++E
Sbjct: 37 LFIGGLSWGTDDASLRDAF-AHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 228 MQGVVCSTRPMRIGPAANK 246
M G + R +R+ PA ++
Sbjct: 96 MDGKELNGRHIRVNPANDR 114
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 74 LWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQTY 133
L+IG L + D+ L FAH G++ KVI ++ T +S G+GF+ F A +
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 134 NGTIMPNGGQNFRLNWA 150
+G + G++ R+N A
Sbjct: 97 DGKEL--NGRHIRVNPA 111
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 274 NTTIFVGNLDPNVTDDHLRQVFGLYGDLVHVKIP------QGKRCGFVQFADRSCAEEAL 327
+T +F+G L D LR F +GD+V K+ + + GFV F D A A+
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 328 RVLNGTLLGGQNVRL 342
++G L G+++R+
Sbjct: 94 SEMDGKELNGRHIRV 108
>AT4G13850.2 | Symbols: GR-RBP2, GRP2, ATGRP2 | ATGRP2 (GLYCINE-RICH
RNA-BINDING PROTEIN 2); RNA binding |
chr4:8021310-8022061 FORWARD
Length = 153
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 168 IFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTE 227
+F+G L+ D L + F + V AKV++DR T R++G+GFV F DE A++E
Sbjct: 37 LFIGGLSWGTDDASLRDAF-AHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 228 MQGVVCSTRPMRIGPAANK 246
M G + R +R+ PA ++
Sbjct: 96 MDGKELNGRHIRVNPANDR 114
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 74 LWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQTY 133
L+IG L + D+ L FAH G++ KVI ++ T +S G+GF+ F A +
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 134 NGTIMPNGGQNFRLNWA 150
+G + G++ R+N A
Sbjct: 97 DGKEL--NGRHIRVNPA 111
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 274 NTTIFVGNLDPNVTDDHLRQVFGLYGDLVHVKIP------QGKRCGFVQFADRSCAEEAL 327
+T +F+G L D LR F +GD+V K+ + + GFV F D A A+
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 328 RVLNGTLLGGQNVRL 342
++G L G+++R+
Sbjct: 94 SEMDGKELNGRHIRV 108
>AT4G13850.1 | Symbols: GR-RBP2, GRP2, ATGRP2 | ATGRP2 (GLYCINE-RICH
RNA-BINDING PROTEIN 2); RNA binding / double-stranded
DNA binding / single-stranded DNA binding |
chr4:8021310-8022061 FORWARD
Length = 158
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 168 IFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTE 227
+F+G L+ D L + F + V AKV++DR T R++G+GFV F DE A++E
Sbjct: 37 LFIGGLSWGTDDASLRDAF-AHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 228 MQGVVCSTRPMRIGPAANK 246
M G + R +R+ PA ++
Sbjct: 96 MDGKELNGRHIRVNPANDR 114
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 74 LWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQTY 133
L+IG L + D+ L FAH G++ KVI ++ T +S G+GF+ F A +
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 134 NGTIMPNGGQNFRLNWA 150
+G + G++ R+N A
Sbjct: 97 DGKEL--NGRHIRVNPA 111
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 274 NTTIFVGNLDPNVTDDHLRQVFGLYGDLVHVKIP------QGKRCGFVQFADRSCAEEAL 327
+T +F+G L D LR F +GD+V K+ + + GFV F D A A+
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 328 RVLNGTLLGGQNVRL 342
++G L G+++R+
Sbjct: 94 SEMDGKELNGRHIRV 108
>AT1G58470.1 | Symbols: RBP1, XF41, ATRBP1 | ATRBP1 (ARABIDOPSIS
THALIANA RNA-BINDING PROTEIN 1); RNA binding |
chr1:21731039-21732204 FORWARD
Length = 360
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 85/186 (45%), Gaps = 27/186 (14%)
Query: 162 DSPDYTIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQ 221
D Y +FVG +A + ++ L + F +RY +V A V +++T + +G+GFVRFA++ +
Sbjct: 2 DYDRYKLFVGGIAKETSEEALKQYF-SRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDV 60
Query: 222 VRAMTEMQGVVCSTRPMRIGPAANKNLGTGTGTQP------KASYQNSQGPQNENDPNNT 275
V+A+ + ++ +P+ + A K+ QP + Q G E N
Sbjct: 61 VKALRDTHFILG--KPVDVRKAIRKH---ELYQQPFSMQFLERKVQQMNGGLREMSSNGV 115
Query: 276 T-----IFVGNLDPNVTDDHLRQVFGLYGDLVHVKI--------PQGKRCGFVQFADRSC 322
T IFVG L N T++ + F +G V + P+G GFV +
Sbjct: 116 TSRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRG--FGFVTYDSEDS 173
Query: 323 AEEALR 328
E ++
Sbjct: 174 VEVVMQ 179
>AT1G03457.2 | Symbols: | RNA-binding protein, putative |
chr1:861109-864019 REVERSE
Length = 438
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 80/169 (47%), Gaps = 13/169 (7%)
Query: 69 DEVRTLWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAER 128
+E L++G + M E L F + V +I+ K T G FL +R A++
Sbjct: 9 EERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADK 68
Query: 129 ILQTY-NGTIMPNGGQNFRLNWATFSAGGERRHDD------SPDYTIFVGDLAADVTDYH 181
++ ++ N +P ++ +A GE D +P++ +FVG L +V++
Sbjct: 69 VINSFHNKKTLPGASSPLQVKYA----DGELERLDVLDCSCNPEHKLFVGMLPKNVSETE 124
Query: 182 LTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTEMQG 230
+ +F + Y ++K +++ L + +KG F+++ + + V AM + G
Sbjct: 125 VQSLF-SEYGTIKDLQILRGSLQT-SKGCLFLKYESKEQAVAAMEALNG 171
>AT4G26650.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:13445558-13447598 FORWARD
Length = 455
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 91/213 (42%), Gaps = 16/213 (7%)
Query: 67 TPDEVRTLWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGA 126
+ ++ L+IG + + DE L + F G+L ++R++ T ++ G+GF+ F + A
Sbjct: 10 SASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVA 69
Query: 127 ERIL---QTYNGTIMPNGGQNFRLNWATFSAGGERRHDDSPDY----------TIFVGDL 173
ER++ +G + R + H SP + IFVG L
Sbjct: 70 ERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGL 129
Query: 174 AADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTEMQGVVC 233
+ +T+ F ++ ++ V+ D T R +G+GF+ F D E V +
Sbjct: 130 PSSITEAEFKNYF-DQFGTIADVVVMYDHNTQRPRGFGFITF-DSEESVDMVLHKTFHEL 187
Query: 234 STRPMRIGPAANKNLGTGTGTQ-PKASYQNSQG 265
+ + + + A K L + T + P Y N+ G
Sbjct: 188 NGKMVEVKRAVPKELSSTTPNRSPLIGYGNNYG 220
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 78/192 (40%), Gaps = 17/192 (8%)
Query: 157 ERRHDDSPDY-TIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRF 215
E++ + + D +F+G ++ D + L E F +Y + A ++ DR T R +G+GF+ F
Sbjct: 5 EQKMESASDLGKLFIGGISWDTDEERLQEYF-GKYGDLVEAVIMRDRTTGRARGFGFIVF 63
Query: 216 ADESEQVRAMTEMQGVVCSTRPMRIGPAANKNLGTGTGTQPKASYQNSQGPQNENDPNNT 275
AD S R + + + T + + P S G N
Sbjct: 64 ADPSVAERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHG-GNGGGARTK 122
Query: 276 TIFVGNLDPNVTDDHLRQVFGLYGDLVHVKI--------PQGKRCGFVQFADRSCAEEAL 327
IFVG L ++T+ + F +G + V + P+G GF+ F + L
Sbjct: 123 KIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRG--FGFITFDSEESVDMVL 180
Query: 328 RV----LNGTLL 335
LNG ++
Sbjct: 181 HKTFHELNGKMV 192
>AT4G18120.2 | Symbols: AML3 | AML3 (ARABIDOPSIS MEI2-LIKE) |
chr4:10038890-10041962 FORWARD
Length = 730
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 269 ENDPNNTTIFVGNLDPNVTDDHLRQVFGLYGDLVHVK-IPQGKRCGFVQFADRSCAEEAL 327
E D N T+ V NL P+V++ L +FG+YG++ ++ P + FV+F D A+ AL
Sbjct: 216 EKDVNQGTLVVFNLAPSVSNRDLENIFGVYGEIKEIRETPNKRHHKFVEFFDVRSADAAL 275
Query: 328 RVLNGTLLGGQNVRLSWGR 346
+ LN T + G+ ++L R
Sbjct: 276 KALNRTEIAGKRIKLEHSR 294
>AT4G18120.1 | Symbols: AML3 | AML3 (ARABIDOPSIS MEI2-LIKE); RNA
binding | chr4:10038890-10041962 FORWARD
Length = 730
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 269 ENDPNNTTIFVGNLDPNVTDDHLRQVFGLYGDLVHVK-IPQGKRCGFVQFADRSCAEEAL 327
E D N T+ V NL P+V++ L +FG+YG++ ++ P + FV+F D A+ AL
Sbjct: 216 EKDVNQGTLVVFNLAPSVSNRDLENIFGVYGEIKEIRETPNKRHHKFVEFFDVRSADAAL 275
Query: 328 RVLNGTLLGGQNVRLSWGR 346
+ LN T + G+ ++L R
Sbjct: 276 KALNRTEIAGKRIKLEHSR 294
>AT4G26650.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:13445271-13447598 FORWARD
Length = 452
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 91/213 (42%), Gaps = 16/213 (7%)
Query: 67 TPDEVRTLWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGA 126
+ ++ L+IG + + DE L + F G+L ++R++ T ++ G+GF+ F + A
Sbjct: 7 SASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVA 66
Query: 127 ERIL---QTYNGTIMPNGGQNFRLNWATFSAGGERRHDDSPDY----------TIFVGDL 173
ER++ +G + R + H SP + IFVG L
Sbjct: 67 ERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGL 126
Query: 174 AADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTEMQGVVC 233
+ +T+ F ++ ++ V+ D T R +G+GF+ F D E V +
Sbjct: 127 PSSITEAEFKNYF-DQFGTIADVVVMYDHNTQRPRGFGFITF-DSEESVDMVLHKTFHEL 184
Query: 234 STRPMRIGPAANKNLGTGTGTQ-PKASYQNSQG 265
+ + + + A K L + T + P Y N+ G
Sbjct: 185 NGKMVEVKRAVPKELSSTTPNRSPLIGYGNNYG 217
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 78/192 (40%), Gaps = 17/192 (8%)
Query: 157 ERRHDDSPDY-TIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRF 215
E++ + + D +F+G ++ D + L E F +Y + A ++ DR T R +G+GF+ F
Sbjct: 2 EQKMESASDLGKLFIGGISWDTDEERLQEYF-GKYGDLVEAVIMRDRTTGRARGFGFIVF 60
Query: 216 ADESEQVRAMTEMQGVVCSTRPMRIGPAANKNLGTGTGTQPKASYQNSQGPQNENDPNNT 275
AD S R + + + T + + P S G N
Sbjct: 61 ADPSVAERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHG-GNGGGARTK 119
Query: 276 TIFVGNLDPNVTDDHLRQVFGLYGDLVHVKI--------PQGKRCGFVQFADRSCAEEAL 327
IFVG L ++T+ + F +G + V + P+G GF+ F + L
Sbjct: 120 KIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRG--FGFITFDSEESVDMVL 177
Query: 328 RV----LNGTLL 335
LNG ++
Sbjct: 178 HKTFHELNGKMV 189
>AT3G13224.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:4254855-4256021 FORWARD
Length = 231
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 75/149 (50%), Gaps = 7/149 (4%)
Query: 74 LWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQTY 133
++IG L + F GE+ ++R+++T Q G+GF+ F + +++++
Sbjct: 21 IFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED- 79
Query: 134 NGTIMPNGGQNFRLNWATFSAGGERRHDDSPDYTIFVGDLAADVTDYHLTEVFRTRYNSV 193
T + NG Q + G + D IFVG + + VT+ L + F +Y +V
Sbjct: 80 --THVINGKQ-VEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFF-AKYGNV 135
Query: 194 KGAKVVIDRLTSRTKGYGFVRFADESEQV 222
+V+ D T+R++G+GFV F +SE+V
Sbjct: 136 VEHQVIRDHETNRSRGFGFVIF--DSEEV 162
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 73/185 (39%), Gaps = 26/185 (14%)
Query: 168 IFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTE 227
IF+G L D T+ + F +Y + + ++ DR T + +G+GF+ FAD S + + +
Sbjct: 21 IFIGGLHKDTTNTVFNKHF-GKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 228 MQGVVCSTRPMRIGPAANKNLGTGTGTQPKASYQNSQGPQNENDPNNTTIFVGNLDPNVT 287
+ G + K + G D IFVG + VT
Sbjct: 80 THVI------------------NGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVT 121
Query: 288 DDHLRQVFGLYGDLVHVKIPQGKRC------GFVQFADRSCAEEALRVLNGTLLGGQNVR 341
+D L+ F YG++V ++ + GFV F +E L N + V
Sbjct: 122 EDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVS 181
Query: 342 L-SWG 345
L WG
Sbjct: 182 LYKWG 186
>AT3G52150.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:19353052-19354068 FORWARD
Length = 253
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 82/181 (45%), Gaps = 14/181 (7%)
Query: 168 IFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTE 227
+++G++ VT+ LT++ + +V+ +V+ D+ + R++ +GF + + +
Sbjct: 78 VYIGNIPRTVTNEQLTKLVE-EHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEK 136
Query: 228 MQGVVCSTRPMRIGPAANKNLGTGTGTQPKASYQNSQGPQNENDPNNTTIFVGNLDPNVT 287
+ G R +++ + P S S+ + P ++VGNL VT
Sbjct: 137 LNGNTVEGREIKVNITEKP-----IASSPDLSVLQSEDSAFVDSPYK--VYVGNLAKTVT 189
Query: 288 DDHLRQVFGLYGDLVHVKI---PQGKRC---GFVQFADRSCAEEALRVLNGTLLGGQNVR 341
+ L +F G +V K+ P + GFV F+ E A+ LN +LL GQ +R
Sbjct: 190 KEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIR 249
Query: 342 L 342
+
Sbjct: 250 V 250
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 83/190 (43%), Gaps = 24/190 (12%)
Query: 69 DEVRTLWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAER 128
+ R ++IG++ + L + G + V+V+ +K + +S +GF S A
Sbjct: 73 EAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANA 132
Query: 129 ILQTYNGTIMPNGGQNFRLNWATFSAGGERRHDDSPD---------------YTIFVGDL 173
+++ NG + G+ ++N E+ SPD Y ++VG+L
Sbjct: 133 VVEKLNGNTV--EGREIKVNIT------EKPIASSPDLSVLQSEDSAFVDSPYKVYVGNL 184
Query: 174 AADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTEMQGVVC 233
A VT L +F + V AKV TS++ G+GFV F+ E + A+ + +
Sbjct: 185 AKTVTKEMLENLFSEK-GKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLL 243
Query: 234 STRPMRIGPA 243
+ +R+ A
Sbjct: 244 EGQKIRVNKA 253
>AT3G52150.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:19353052-19354068 FORWARD
Length = 253
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 82/181 (45%), Gaps = 14/181 (7%)
Query: 168 IFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTE 227
+++G++ VT+ LT++ + +V+ +V+ D+ + R++ +GF + + +
Sbjct: 78 VYIGNIPRTVTNEQLTKLVE-EHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEK 136
Query: 228 MQGVVCSTRPMRIGPAANKNLGTGTGTQPKASYQNSQGPQNENDPNNTTIFVGNLDPNVT 287
+ G R +++ + P S S+ + P ++VGNL VT
Sbjct: 137 LNGNTVEGREIKVNITEKP-----IASSPDLSVLQSEDSAFVDSPYK--VYVGNLAKTVT 189
Query: 288 DDHLRQVFGLYGDLVHVKI---PQGKRC---GFVQFADRSCAEEALRVLNGTLLGGQNVR 341
+ L +F G +V K+ P + GFV F+ E A+ LN +LL GQ +R
Sbjct: 190 KEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIR 249
Query: 342 L 342
+
Sbjct: 250 V 250
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 83/190 (43%), Gaps = 24/190 (12%)
Query: 69 DEVRTLWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAER 128
+ R ++IG++ + L + G + V+V+ +K + +S +GF S A
Sbjct: 73 EAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANA 132
Query: 129 ILQTYNGTIMPNGGQNFRLNWATFSAGGERRHDDSPD---------------YTIFVGDL 173
+++ NG + G+ ++N E+ SPD Y ++VG+L
Sbjct: 133 VVEKLNGNTV--EGREIKVNIT------EKPIASSPDLSVLQSEDSAFVDSPYKVYVGNL 184
Query: 174 AADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTEMQGVVC 233
A VT L +F + V AKV TS++ G+GFV F+ E + A+ + +
Sbjct: 185 AKTVTKEMLENLFSEK-GKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLL 243
Query: 234 STRPMRIGPA 243
+ +R+ A
Sbjct: 244 EGQKIRVNKA 253
>AT4G13850.4 | Symbols: GR-RBP2, GRP2, ATGRP2 | ATGRP2 (GLYCINE-RICH
RNA-BINDING PROTEIN 2) | chr4:8021310-8022061 FORWARD
Length = 129
Score = 57.8 bits (138), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 168 IFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTE 227
+F+G L+ D L + F + V AKV++DR T R++G+GFV F DE A++E
Sbjct: 37 LFIGGLSWGTDDASLRDAF-AHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 228 MQGVVCSTRPMRIGPAANK 246
M G + R +R+ PA ++
Sbjct: 96 MDGKELNGRHIRVNPANDR 114
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 74 LWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQTY 133
L+IG L + D+ L FAH G++ KVI ++ T +S G+GF+ F A +
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 134 NGTIMPNGGQNFRLNWA 150
+G + G++ R+N A
Sbjct: 97 DGKEL--NGRHIRVNPA 111
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 274 NTTIFVGNLDPNVTDDHLRQVFGLYGDLVHVKI------PQGKRCGFVQFADRSCAEEAL 327
+T +F+G L D LR F +GD+V K+ + + GFV F D A A+
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 328 RVLNGTLLGGQNVRLS 343
++G L G+++R++
Sbjct: 94 SEMDGKELNGRHIRVN 109
>AT2G35410.1 | Symbols: | 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative |
chr2:14905420-14906669 FORWARD
Length = 308
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 85/181 (46%), Gaps = 19/181 (10%)
Query: 72 RTLWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQ 131
R L++ +L + M N + + F G + V++IR K+ ++ G+ F+ S A+ +
Sbjct: 95 RKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKD-GKNRGFAFVTMASGEEAQAAID 153
Query: 132 TYNGTIMPNGGQNFRLNWATFSAGGERRHDDSPD-----------YTIFVGDLAADVTDY 180
++ T +G R+ +F+ ++ SP+ + ++V +LA
Sbjct: 154 KFD-TFQVSG----RIISVSFARRFKKPTPKSPNDLPSPAPGDTRHKLYVSNLAWKARST 208
Query: 181 HLTEVFRTR-YNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTEMQGVVCSTRPMR 239
HL E+F +N V A+VV R+ GYGFV FA E A+T++ G RP+
Sbjct: 209 HLRELFTAADFNPV-SARVVFADPEGRSSGYGFVSFATREEAENAITKLNGKEIMGRPIT 267
Query: 240 I 240
+
Sbjct: 268 L 268
>AT2G41060.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:17134216-17135571 FORWARD
Length = 451
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 79/183 (43%), Gaps = 16/183 (8%)
Query: 72 RTLWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQ 131
R +++ L + + L F GE+ K + +K + QS+GYGF+ F SR+GA L+
Sbjct: 128 RKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALK 187
Query: 132 TYNGTIMPNGGQNFRLNWATFS--------AGGERRHDDSPDYTIFVGDLAADVTDYHLT 183
I G + A+ A + + ++ I+V +++AD+ L
Sbjct: 188 QPQKKI---GTRMTACQLASIGPVQGNPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLL 244
Query: 184 EVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTE----MQGVVCSTRPMR 239
E F +R+ ++ + +D+ T R KG+ + +A+ E +G V
Sbjct: 245 EFF-SRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEPHKTFEGHVLHCHKAN 303
Query: 240 IGP 242
GP
Sbjct: 304 DGP 306
>AT2G41060.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:17134216-17135571 FORWARD
Length = 451
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 79/183 (43%), Gaps = 16/183 (8%)
Query: 72 RTLWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQ 131
R +++ L + + L F GE+ K + +K + QS+GYGF+ F SR+GA L+
Sbjct: 128 RKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALK 187
Query: 132 TYNGTIMPNGGQNFRLNWATFS--------AGGERRHDDSPDYTIFVGDLAADVTDYHLT 183
I G + A+ A + + ++ I+V +++AD+ L
Sbjct: 188 QPQKKI---GTRMTACQLASIGPVQGNPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLL 244
Query: 184 EVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTE----MQGVVCSTRPMR 239
E F +R+ ++ + +D+ T R KG+ + +A+ E +G V
Sbjct: 245 EFF-SRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEPHKTFEGHVLHCHKAN 303
Query: 240 IGP 242
GP
Sbjct: 304 DGP 306
>AT5G61030.1 | Symbols: GR-RBP3 | GR-RBP3 (glycine-rich RNA-binding
protein 3); RNA binding | chr5:24578096-24579378 FORWARD
Length = 309
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 74 LWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQTY 133
L+IG + Y MDE+ L + F GE+ +VI ++ T +S G+GF+ FTS A +Q
Sbjct: 42 LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQAL 101
Query: 134 NGTIMPNGGQNFRLNWA 150
+G + G+ ++N+A
Sbjct: 102 DGRDLH--GRVVKVNYA 116
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 168 IFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTE 227
+F+G +A + + L E F T+Y V +V++DR T R++G+GFV F A+
Sbjct: 42 LFIGGMAYSMDEDSLREAF-TKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Query: 228 MQGVVCSTRPMRI 240
+ G R +++
Sbjct: 101 LDGRDLHGRVVKV 113
>AT2G42240.2 | Symbols: | similar to RNA-binding protein, putative
[Arabidopsis thaliana] (TAIR:AT3G13700.2); similar to
unnamed protein product [Vitis vinifera]
(GB:CAO71899.1); contains InterPro domain RNA
recognition motif, RNP-1; (InterPro:IPR000504); contains
InterPro domain Nucleotide-binding, alpha-beta plait;
(InterPro:IPR012677) | chr2:17603922-17605989 FORWARD
Length = 302
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 52/109 (47%), Gaps = 12/109 (11%)
Query: 242 PAANKNLGTGTGTQPKASYQNSQGPQNENDPNNTTIFVGNLDPNVTDDHLRQVFGLYGDL 301
PA ++ + G P S+ P DP T+F+ N+ PN T+ L QVF
Sbjct: 178 PAQSQGIANVAGRAP-----TSRKPSKAADPC-PTLFIANMGPNCTEAELIQVFSRCRGF 231
Query: 302 VHVKI--PQGKRCGFVQFADRSCAEEALRVLNGTL----LGGQNVRLSW 344
+ +KI G FV F D SC+ EAL L GT+ L G+ +RL +
Sbjct: 232 LKLKIQGTYGTPVAFVDFQDVSCSSEALHTLQGTVLYSSLTGEVLRLQY 280
>AT5G25060.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:8634222-8639987 REVERSE
Length = 946
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 9/91 (9%)
Query: 268 NENDPNNTTIFVGNLDPNVTDDHLRQVFGLYGDLVHVKI-----PQGKR----CGFVQFA 318
++ DP T ++VGNL P V ++ L + FG +G + VKI + KR CGFV F
Sbjct: 172 DDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQRNCGFVSFM 231
Query: 319 DRSCAEEALRVLNGTLLGGQNVRLSWGRSPS 349
+R+ + A + G ++ +++ WG++ S
Sbjct: 232 NRADGQAAKDEMQGIIVYEYELKIGWGKAVS 262
>AT2G42240.3 | Symbols: | similar to RNA-binding protein, putative
[Arabidopsis thaliana] (TAIR:AT3G13700.2); similar to
unnamed protein product [Vitis vinifera]
(GB:CAO71899.1); contains InterPro domain RNA
recognition motif, RNP-1; (InterPro:IPR000504); contains
InterPro domain Nucleotide-binding, alpha-beta plait;
(InterPro:IPR012677) | chr2:17603922-17606050 FORWARD
Length = 289
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 51/107 (47%), Gaps = 12/107 (11%)
Query: 242 PAANKNLGTGTGTQPKASYQNSQGPQNENDPNNTTIFVGNLDPNVTDDHLRQVFGLYGDL 301
PA ++ + G P S+ P DP T+F+ N+ PN T+ L QVF
Sbjct: 178 PAQSQGIANVAGRAP-----TSRKPSKAADPC-PTLFIANMGPNCTEAELIQVFSRCRGF 231
Query: 302 VHVKI--PQGKRCGFVQFADRSCAEEALRVLNGTL----LGGQNVRL 342
+ +KI G FV F D SC+ EAL L GT+ L G+ +RL
Sbjct: 232 LKLKIQGTYGTPVAFVDFQDVSCSSEALHTLQGTVLYSSLTGEVLRL 278
>AT5G47620.2 | Symbols: | heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative | chr5:19319774-19321504
REVERSE
Length = 431
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 69/151 (45%), Gaps = 7/151 (4%)
Query: 74 LWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERIL--- 130
L+IG + + E+ L F GE+ +++++ T ++ G+GF+ F AER++
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLK 67
Query: 131 QTYNGTIMPNGGQNFRLNWATFSAGGERRHDD---SPDYTIFVGDLAADVTDYHLTEVFR 187
+G I+ R + F+ S IFVG LA+ VT+ + F
Sbjct: 68 HIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYF- 126
Query: 188 TRYNSVKGAKVVIDRLTSRTKGYGFVRFADE 218
++ + V+ D T R +G+GF+ + E
Sbjct: 127 AQFGMITDVVVMYDHRTQRPRGFGFISYDSE 157
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 83/184 (45%), Gaps = 31/184 (16%)
Query: 168 IFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADE--SEQVRAM 225
+F+G ++ + ++ L + F + + V A ++ DR T R +G+GFV FAD +E+V +
Sbjct: 8 LFIGGISWETSEDRLRDYFHS-FGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 226 TE-MQGVVCSTR---PMRIGPAANKNLGTGTGTQPKASYQNSQGPQNENDPNNTTIFVGN 281
+ G + + P NK+ +S Q S GP N+ IFVG
Sbjct: 67 KHIIDGKIVEAKKAVPRDDHVVFNKS---------NSSLQGSPGPS-----NSKKIFVGG 112
Query: 282 LDPNVTDDHLRQVFGLYGDLVHVKIPQGKRC------GFVQFADRSCAEEALRV----LN 331
L +VT+ ++ F +G + V + R GF+ + ++ L+ LN
Sbjct: 113 LASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELN 172
Query: 332 GTLL 335
G ++
Sbjct: 173 GKMV 176
>AT5G47620.1 | Symbols: | heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative | chr5:19319774-19321504
REVERSE
Length = 431
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 69/151 (45%), Gaps = 7/151 (4%)
Query: 74 LWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERIL--- 130
L+IG + + E+ L F GE+ +++++ T ++ G+GF+ F AER++
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLK 67
Query: 131 QTYNGTIMPNGGQNFRLNWATFSAGGERRHDD---SPDYTIFVGDLAADVTDYHLTEVFR 187
+G I+ R + F+ S IFVG LA+ VT+ + F
Sbjct: 68 HIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYF- 126
Query: 188 TRYNSVKGAKVVIDRLTSRTKGYGFVRFADE 218
++ + V+ D T R +G+GF+ + E
Sbjct: 127 AQFGMITDVVVMYDHRTQRPRGFGFISYDSE 157
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 83/184 (45%), Gaps = 31/184 (16%)
Query: 168 IFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADE--SEQVRAM 225
+F+G ++ + ++ L + F + + V A ++ DR T R +G+GFV FAD +E+V +
Sbjct: 8 LFIGGISWETSEDRLRDYFHS-FGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 226 TE-MQGVVCSTR---PMRIGPAANKNLGTGTGTQPKASYQNSQGPQNENDPNNTTIFVGN 281
+ G + + P NK+ +S Q S GP N+ IFVG
Sbjct: 67 KHIIDGKIVEAKKAVPRDDHVVFNKS---------NSSLQGSPGPS-----NSKKIFVGG 112
Query: 282 LDPNVTDDHLRQVFGLYGDLVHVKIPQGKRC------GFVQFADRSCAEEALRV----LN 331
L +VT+ ++ F +G + V + R GF+ + ++ L+ LN
Sbjct: 113 LASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELN 172
Query: 332 GTLL 335
G ++
Sbjct: 173 GKMV 176
>AT1G48920.1 | Symbols: ATNUC-L1, PARL1 | ATNUC-L1/PARL1 (PARALLEL
1); nucleic acid binding | chr1:18101854-18105090
FORWARD
Length = 557
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 84/192 (43%), Gaps = 33/192 (17%)
Query: 72 RTLWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQ 131
+TL+ +L + ++ + F GE+ V+ N++ G+G +EF S A++ L+
Sbjct: 297 KTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKALE 356
Query: 132 TYNGTIMPNGGQNFRLNWA-----------------TFSAGGERRHDDSPDYTIFVGDLA 174
+ ++ G+ RL+ A F +GG D + IFV
Sbjct: 357 FHGRPLL---GREIRLDIAQERGERGERPAFTPQSGNFRSGG----DGGDEKKIFVKGFD 409
Query: 175 ADVTDYHLTEVFRTRYNS---VKGAKVVIDRLTSRTKGYGFVRFADESEQVRAM--TEMQ 229
A +++ + R ++S +K V IDR T +KG ++ F++ E+ + ++M
Sbjct: 410 ASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFSEGKEKALELNGSDMG 469
Query: 230 G----VVCSTRP 237
G VV RP
Sbjct: 470 GGFYLVVDEPRP 481
>AT3G07810.2 | Symbols: | heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative | chr3:2492881-2495108
FORWARD
Length = 495
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 92/199 (46%), Gaps = 27/199 (13%)
Query: 74 LWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERIL--- 130
L+IG + + +E L + F+ GE+ +++++ T ++ G+GF+ F A AE ++
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEK 67
Query: 131 QTYNGTI------MPNGGQNF--RLNWATF--SAGGERRHDDSPDYTIFVGDLAADVTDY 180
+G + +P QN R N ++ S GG R IFVG L + VT+
Sbjct: 68 HNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRK-----IFVGGLPSSVTES 122
Query: 181 HLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRF----ADESEQVRAMTEMQGVVCSTR 236
F ++ + V+ D T R +G+GF+ + A E ++ E+ G + +
Sbjct: 123 DFKTYFE-QFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVK 181
Query: 237 ---PMRIGPAANKN-LGTG 251
P + P +++ LG G
Sbjct: 182 RAVPKELSPGPSRSPLGAG 200
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 78/182 (42%), Gaps = 25/182 (13%)
Query: 168 IFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTE 227
+F+G ++ D + L E F + + V A ++ DR T R +G+GFV FAD + +TE
Sbjct: 8 LFIGGISWDTNEERLKEYFSS-FGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 228 MQGVVCS-TRPMRIGPAANKNLGTGTGTQPKASYQNSQGPQNENDPNNT-TIFVGNLDPN 285
+ + P ++N+ +S Q S G P T IFVG L +
Sbjct: 67 KHNIDGRLVEAKKAVPRDDQNM---VNRSNSSSIQGSPG-----GPGRTRKIFVGGLPSS 118
Query: 286 VTDDHLRQVFGLYGDLVHVKI--------PQGKRCGFVQFADRSCAEEAL----RVLNGT 333
VT+ + F +G V + P+G GF+ + E+ L LNG
Sbjct: 119 VTESDFKTYFEQFGTTTDVVVMYDHNTQRPRG--FGFITYDSEEAVEKVLLKTFHELNGK 176
Query: 334 LL 335
++
Sbjct: 177 MV 178
>AT3G07810.1 | Symbols: | heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative | chr3:2492881-2495058
FORWARD
Length = 494
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 92/199 (46%), Gaps = 27/199 (13%)
Query: 74 LWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERIL--- 130
L+IG + + +E L + F+ GE+ +++++ T ++ G+GF+ F A AE ++
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEK 67
Query: 131 QTYNGTI------MPNGGQNF--RLNWATF--SAGGERRHDDSPDYTIFVGDLAADVTDY 180
+G + +P QN R N ++ S GG R IFVG L + VT+
Sbjct: 68 HNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRK-----IFVGGLPSSVTES 122
Query: 181 HLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRF----ADESEQVRAMTEMQGVVCSTR 236
F ++ + V+ D T R +G+GF+ + A E ++ E+ G + +
Sbjct: 123 DFKTYFE-QFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVK 181
Query: 237 ---PMRIGPAANKN-LGTG 251
P + P +++ LG G
Sbjct: 182 RAVPKELSPGPSRSPLGAG 200
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 78/182 (42%), Gaps = 25/182 (13%)
Query: 168 IFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTE 227
+F+G ++ D + L E F + + V A ++ DR T R +G+GFV FAD + +TE
Sbjct: 8 LFIGGISWDTNEERLKEYFSS-FGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 228 MQGVVCS-TRPMRIGPAANKNLGTGTGTQPKASYQNSQGPQNENDPNNT-TIFVGNLDPN 285
+ + P ++N+ +S Q S G P T IFVG L +
Sbjct: 67 KHNIDGRLVEAKKAVPRDDQNM---VNRSNSSSIQGSPG-----GPGRTRKIFVGGLPSS 118
Query: 286 VTDDHLRQVFGLYGDLVHVKI--------PQGKRCGFVQFADRSCAEEAL----RVLNGT 333
VT+ + F +G V + P+G GF+ + E+ L LNG
Sbjct: 119 VTESDFKTYFEQFGTTTDVVVMYDHNTQRPRG--FGFITYDSEEAVEKVLLKTFHELNGK 176
Query: 334 LL 335
++
Sbjct: 177 MV 178
>AT1G07360.1 | Symbols: | zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein |
chr1:2260560-2262793 REVERSE
Length = 481
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 267 QNENDPNNTTIFVGNLDPNVTDDHLRQVFGLYGDLVHVKIPQGKRCGFVQFADRSCAEEA 326
++ +D + T++VG L+ + + +R F +G++ ++I K C FV + R AE+A
Sbjct: 220 ESPDDESIKTLYVGGLNSRILEQDIRDQFYAHGEIESIRILADKACAFVTYTSREGAEKA 279
Query: 327 LRVL-NGTLLGGQNVRLSWGR 346
+ L N ++ GQ ++L+WGR
Sbjct: 280 AQELSNRLVINGQRLKLTWGR 300
>AT5G19960.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:6744031-6746135 FORWARD
Length = 337
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 50/75 (66%), Gaps = 5/75 (6%)
Query: 273 NNTTIFVGNLDPNVTDDHLRQVFGLYGDLVHVKIP-----QGKRCGFVQFADRSCAEEAL 327
+ +++VG L ++T++ +R+VF +YG ++ VKI +GK GFV F++R A++A+
Sbjct: 5 DGNSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAI 64
Query: 328 RVLNGTLLGGQNVRL 342
++G +GG+ VR+
Sbjct: 65 EDMDGKSIGGRAVRV 79
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 67 TPDEVRTLWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGA 126
T D+ ++++G L Y + E + + F+ G + TVK++ N + + + YGF+ F++R A
Sbjct: 2 TMDDGNSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIV-NDRSVRGKCYGFVTFSNRRSA 60
Query: 127 ERILQTYNGTIMPNGGQNFRLNWATFSAG 155
+ ++ +G + GG+ R+N T G
Sbjct: 61 DDAIEDMDGKSI--GGRAVRVNDVTTRGG 87
>AT3G20930.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:7331745-7333755 FORWARD
Length = 374
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%)
Query: 68 PDEVRTLWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAE 127
P + + L+I L ++ E L F GEL VK+I +K + +S+GY FLE+T+ A
Sbjct: 278 PVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAG 337
Query: 128 RILQTYNGTIM 138
L+ NG I+
Sbjct: 338 TALKEMNGKII 348
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 19/158 (12%)
Query: 210 YGFVRFADESEQVRAMTEMQGV--VCSTRPMRIGPAANKNLGTGTGTQPKASYQNSQGPQ 267
+GF DE R+ E+ GV V + P + NK+ G TQ +S+ P
Sbjct: 224 FGFCCDLDE----RSAVELAGVPGVLAVVPDNSFESLNKDY-EGDSTQDSRDQDDSESP- 277
Query: 268 NENDPNNTT-IFVGNLDPNVTDDHLRQVFGLYGDLVHVKI------PQGKRCGFVQFADR 320
P T +F+ L ++ LR F +G+LV VKI + K F+++
Sbjct: 278 ----PVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTE 333
Query: 321 SCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQTQSDPS 358
A AL+ +NG ++ G + + ++ +Q +S PS
Sbjct: 334 EAAGTALKEMNGKIINGWMIVVDVAKTKPFRQNRSQPS 371
>AT3G14450.1 | Symbols: CID9 | CID9 (CTC-Interacting Domain 9); RNA
binding / protein binding | chr3:4849795-4851608 FORWARD
Length = 327
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 91/212 (42%), Gaps = 32/212 (15%)
Query: 159 RHDDSPDYTIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADE 218
+ +DS T++V D+ VT+ L +F + V ++ D + FV FAD+
Sbjct: 134 QREDSIRRTVYVSDIDQSVTEEGLAGLF-SNCGQVVDCRICGD--PHSVLRFAFVEFADD 190
Query: 219 SEQVRAMTEMQGVVCSTRPMRIGPAANKNLGTGTGTQPKASYQNSQGPQNENDPNNTTIF 278
A++ + G + P+R+ P+ L P++ ++E + TI+
Sbjct: 191 QGAHEALS-LGGTMLGFYPVRVLPSKTAILPVNPTFLPRS--------EDEREMCTRTIY 241
Query: 279 VGNLDPNVTDDHLRQVFG----------LYGDLVHVKIPQGKRCGFVQFADRSCAEEALR 328
N+D V+ +R F L GD +H R FV+FA A+ AL
Sbjct: 242 CTNIDKKVSQADVRNFFESACGEVTRLRLLGDQLH-----STRIAFVEFA---LADSALS 293
Query: 329 VLN--GTLLGGQNVRLSWGRSPSNKQTQSDPS 358
LN G ++G Q +R+S ++P + PS
Sbjct: 294 ALNCSGMVVGSQPIRVSPSKTPVRPRITRPPS 325
>AT5G40490.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:16242711-16244651 FORWARD
Length = 423
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 80/198 (40%), Gaps = 28/198 (14%)
Query: 168 IFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTE 227
IFVG LA + T + F +Y + + ++ DR T + +G+GFV +AD S + + +
Sbjct: 44 IFVGGLARETTSAEFLKHF-GKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQD 102
Query: 228 MQGVVCSTRPMRIGPAANKNLGTGTGTQPKASYQNSQGPQNENDPNNTTIFVGNLDPNVT 287
++ G Q + +G + ND IFVG + +V
Sbjct: 103 NHIII--------------------GKQVEIKRTIPRGSMSSNDFKTKKIFVGGIPSSVD 142
Query: 288 DDHLRQVFGLYGDLVHVKIP------QGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVR 341
DD ++ F +G+L +I + + GFV + + L N L G V
Sbjct: 143 DDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVE 202
Query: 342 LSWGRSPSNKQTQSDPSQ 359
+ P + + PS+
Sbjct: 203 IKKAE-PKKPNSVTTPSK 219
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 67/150 (44%), Gaps = 7/150 (4%)
Query: 69 DEVRTLWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAER 128
D +++G L + F GE+ +++++ T Q G+GF+ + + ++
Sbjct: 39 DSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDK 98
Query: 129 ILQTYNGTIMPNGGQNFRLNWATFSAGGERRHDDSPDYTIFVGDLAADVTDYHLTEVFRT 188
++Q + I G+ + G +D IFVG + + V D E F
Sbjct: 99 VIQDNHIII----GKQVEIKRTI--PRGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFF-M 151
Query: 189 RYNSVKGAKVVIDRLTSRTKGYGFVRFADE 218
++ +K +++ D T R++G+GFV + E
Sbjct: 152 QFGELKEHQIMRDHSTGRSRGFGFVTYESE 181
>AT5G06210.1 | Symbols: | RNA-binding protein, putative |
chr5:1878498-1879516 FORWARD
Length = 146
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 57/100 (57%), Gaps = 8/100 (8%)
Query: 168 IFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTE 227
+F+G L+ T+ L+E F ++ V A++V+DR++ R+KG+GFV FA E +A+ E
Sbjct: 36 LFIGGLSFCTTEQGLSEAF-SKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 228 MQGVVCSTRPMRIGPA-ANKNLGTGTGTQPKASYQNSQGP 266
G + R + + A A ++LG G G Y ++GP
Sbjct: 95 FNGQQLNGRTIFVDYAKAKQSLGGGGG------YPIARGP 128
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 38/62 (61%)
Query: 74 LWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQTY 133
L+IG L + E L + F+ G++ +++ ++ +++S+G+GF+ F S A++ L +
Sbjct: 36 LFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEF 95
Query: 134 NG 135
NG
Sbjct: 96 NG 97
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | GR-RBP4/GRP4 (GLYCINE-RICH
RNA-BINDING PROTEIN 4); RNA binding |
chr3:8606769-8607684 REVERSE
Length = 136
Score = 52.8 bits (125), Expect = 4e-07, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Query: 168 IFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTE 227
+FVG L+ D L + F T + V A V+ DR T R++G+GFV F+ E A+ E
Sbjct: 37 LFVGGLSWGTDDSSLKQAF-TSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 228 MQGVVCSTRPMRIGPAANKNLGTGTGTQPKASY 260
M G + R +R+ NL T + P++S+
Sbjct: 96 MDGKELNGRQIRV------NLATERSSAPRSSF 122
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 74 LWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQTY 133
L++G L + D++ L Q F GE+ VI ++ T +S G+GF+ F+ A ++
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 134 NGTIMPNGGQNFRLNWATFSAGGER 158
+G + G+ R+N AT + R
Sbjct: 97 DGKEL--NGRQIRVNLATERSSAPR 119
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | GR-RBP4/GRP4 (GLYCINE-RICH
RNA-BINDING PROTEIN 4); RNA binding / double-stranded
DNA binding / single-stranded DNA binding |
chr3:8606769-8607684 REVERSE
Length = 136
Score = 52.8 bits (125), Expect = 4e-07, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Query: 168 IFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTE 227
+FVG L+ D L + F T + V A V+ DR T R++G+GFV F+ E A+ E
Sbjct: 37 LFVGGLSWGTDDSSLKQAF-TSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 228 MQGVVCSTRPMRIGPAANKNLGTGTGTQPKASY 260
M G + R +R+ NL T + P++S+
Sbjct: 96 MDGKELNGRQIRV------NLATERSSAPRSSF 122
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 74 LWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQTY 133
L++G L + D++ L Q F GE+ VI ++ T +S G+GF+ F+ A ++
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 134 NGTIMPNGGQNFRLNWATFSAGGER 158
+G + G+ R+N AT + R
Sbjct: 97 DGKEL--NGRQIRVNLATERSSAPR 119
>AT1G67770.1 | Symbols: TEL2 | TEL2 (TERMINAL EAR1-LIKE 2); RNA
binding | chr1:25411706-25413816 FORWARD
Length = 527
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 273 NNTTIFVGNLDPNVTDDHLRQVFGLYGDLVHVK-IPQGKRCGFVQFADRSCAEEALRVLN 331
N ++ + NL+P V+ LR +F +YG++ V+ P + FV+F D A +ALRV+N
Sbjct: 181 NQGSLVIMNLEPTVSSSTLRHIFQVYGEVKQVRETPCKREQRFVEFFDVRDAAKALRVMN 240
Query: 332 GTLLGGQNVRLSWGR 346
G ++ G+ + + + R
Sbjct: 241 GKVISGKPMVIQFSR 255
>AT2G29580.1 | Symbols: | zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein |
chr2:12659088-12661235 FORWARD
Length = 483
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 267 QNENDPNNTTIFVGNLDPNVTDDHLRQVFGLYGDLVHVKIPQGKRCGFVQFADRSCAEEA 326
++ D + T++VG L+ V + +R F +G++ ++I K C FV + R AE+A
Sbjct: 220 ESPEDQSIRTLYVGGLNSRVLEQDIRDQFYAHGEIESIRILAEKACAFVTYTTREGAEKA 279
Query: 327 LRVL-NGTLLGGQNVRLSWGRSPSNKQTQ 354
L N ++ GQ ++L+WGR K Q
Sbjct: 280 AEELSNRLVVNGQRLKLTWGRPQVPKPDQ 308
>AT3G54770.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:20284841-20286805 REVERSE
Length = 261
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 51/105 (48%), Gaps = 10/105 (9%)
Query: 168 IFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTE 227
+FVG LA D + + F +Y + A ++ D+LT R+KGYGFV F D RA +
Sbjct: 19 VFVGGLAWDTHKEAMYDHF-IKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACED 77
Query: 228 MQGVVCSTRPMRIGPAANKNLGTGTGTQPKASYQNS--QGPQNEN 270
++ R AN NL + G K+ S QGP+N N
Sbjct: 78 STPIINGRR-------ANCNLASLGGRLRKSPTMTSPQQGPKNGN 115
>AT3G26420.1 | Symbols: ATRZ-1A | ATRZ-1A; RNA binding / nucleotide
binding | chr3:9673190-9674292 FORWARD
Length = 245
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 164 PDYTIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVR 223
P+Y F+G LA +D L + F +Y + AKVV+D+ + R++G+GF+ F ++
Sbjct: 5 PEYRCFIGGLAWTTSDRGLRDAF-EKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDE 63
Query: 224 AMTEMQGVVCSTRPMRIGPAANKNLGTG 251
A+ M G+ R + + A G G
Sbjct: 64 AIAAMNGMDLDGRTITVDKAQPHQGGAG 91
>AT3G15010.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:5052851-5054065 FORWARD
Length = 404
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 88/201 (43%), Gaps = 34/201 (16%)
Query: 168 IFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTE 227
+F+ LAAD T L +F + Y ++ A V++D++T ++KGYGFV F + A+ E
Sbjct: 77 LFIRGLAADTTTEGLRSLFSS-YGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKE 135
Query: 228 MQGVVCSTRPMRIGPAANKNLGTGTGTQPKASYQNSQGPQNENDPNNTTIFVGNLDPNVT 287
+ K G T TQ AS G Q D + I+V N+ ++
Sbjct: 136 ---------------PSKKIDGRVTVTQLAASGNQGTGSQIA-DISMRKIYVANVPFDMP 179
Query: 288 DDHLRQVFGLYGDLVHVKI----PQGKRCGFVQFADRSC--AEEAL----RVLNGTLLGG 337
D L F YGD+ + GK GF F ++ A+ AL +V++G L
Sbjct: 180 ADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHL-- 237
Query: 338 QNVRLSW----GRSPSNKQTQ 354
N +L+ G P Q Q
Sbjct: 238 -NCKLAVDGKKGGKPGMPQAQ 257
>AT3G15010.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:5052851-5054065 FORWARD
Length = 404
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 88/201 (43%), Gaps = 34/201 (16%)
Query: 168 IFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTE 227
+F+ LAAD T L +F + Y ++ A V++D++T ++KGYGFV F + A+ E
Sbjct: 77 LFIRGLAADTTTEGLRSLFSS-YGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKE 135
Query: 228 MQGVVCSTRPMRIGPAANKNLGTGTGTQPKASYQNSQGPQNENDPNNTTIFVGNLDPNVT 287
+ K G T TQ AS G Q D + I+V N+ ++
Sbjct: 136 ---------------PSKKIDGRVTVTQLAASGNQGTGSQIA-DISMRKIYVANVPFDMP 179
Query: 288 DDHLRQVFGLYGDLVHVKI----PQGKRCGFVQFADRSC--AEEAL----RVLNGTLLGG 337
D L F YGD+ + GK GF F ++ A+ AL +V++G L
Sbjct: 180 ADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALADPVKVIDGKHL-- 237
Query: 338 QNVRLSW----GRSPSNKQTQ 354
N +L+ G P Q Q
Sbjct: 238 -NCKLAVDGKKGGKPGMPQAQ 257
>AT3G49390.2 | Symbols: CID10 | CID10; RNA binding |
chr3:18325886-18328643 REVERSE
Length = 353
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 96/229 (41%), Gaps = 37/229 (16%)
Query: 138 MPNGGQNFRLNWATFSAGGER--------RHDDSPDYTIFVGDLAADVTDYHLTEVFRTR 189
+ +G +F +F G R + DD T++V D+ VT+ +L VF
Sbjct: 133 LADGNDHFPRRRRSFGQGKRRMNKRTSLAQKDDVIRRTVYVSDIDQQVTEENLAGVF--- 189
Query: 190 YNSVKGAKVVIDRLTSRTKG---YGFVRFADESEQVRAMTEMQGVVCSTRPMRIGPAANK 246
+ +VV R+ + F+ F +E E RA M G V P+++ P+
Sbjct: 190 ---INCGQVVDCRVCGDPNSVLRFAFIEFTNE-EGARAALSMSGTVLGFYPLKVLPSKTA 245
Query: 247 NLGTGTGTQPKASYQNSQGPQNENDPNNTTIFVGNLDPNVTDDHLRQVFGLYGDLVHVKI 306
P++ ++E + T++ N+D +T L+ F + VH ++
Sbjct: 246 IAPVNPTFLPRS--------EDEREMCVRTVYCTNIDKRITQIDLKGFFEMLCGEVH-RL 296
Query: 307 PQGK-----RCGFVQFADRSCAEEALRVLN--GTLLGGQNVRLSWGRSP 348
G R FV+FA AE A+ L+ G +LG +R+S ++P
Sbjct: 297 RLGDYHHQTRIAFVEFA---MAESAIAALHCSGIVLGALPIRVSPSKTP 342
>AT3G49390.1 | Symbols: CID10 | CID10; RNA binding / protein binding
| chr3:18325886-18328643 REVERSE
Length = 353
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 96/229 (41%), Gaps = 37/229 (16%)
Query: 138 MPNGGQNFRLNWATFSAGGER--------RHDDSPDYTIFVGDLAADVTDYHLTEVFRTR 189
+ +G +F +F G R + DD T++V D+ VT+ +L VF
Sbjct: 133 LADGNDHFPRRRRSFGQGKRRMNKRTSLAQKDDVIRRTVYVSDIDQQVTEENLAGVF--- 189
Query: 190 YNSVKGAKVVIDRLTSRTKG---YGFVRFADESEQVRAMTEMQGVVCSTRPMRIGPAANK 246
+ +VV R+ + F+ F +E E RA M G V P+++ P+
Sbjct: 190 ---INCGQVVDCRVCGDPNSVLRFAFIEFTNE-EGARAALSMSGTVLGFYPLKVLPSKTA 245
Query: 247 NLGTGTGTQPKASYQNSQGPQNENDPNNTTIFVGNLDPNVTDDHLRQVFGLYGDLVHVKI 306
P++ ++E + T++ N+D +T L+ F + VH ++
Sbjct: 246 IAPVNPTFLPRS--------EDEREMCVRTVYCTNIDKRITQIDLKGFFEMLCGEVH-RL 296
Query: 307 PQGK-----RCGFVQFADRSCAEEALRVLN--GTLLGGQNVRLSWGRSP 348
G R FV+FA AE A+ L+ G +LG +R+S ++P
Sbjct: 297 RLGDYHHQTRIAFVEFA---MAESAIAALHCSGIVLGALPIRVSPSKTP 342
>AT4G12640.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:7462694-7467627 FORWARD
Length = 823
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 78/211 (36%), Gaps = 34/211 (16%)
Query: 164 PDYTIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVR 223
P ++VG+L + + L + F R+ ++ R Y FV F + +
Sbjct: 21 PSRHLWVGNLPHGILERELADRF-LRFGELESLAFQPGR------SYAFVNFNHDEDAFA 73
Query: 224 AMTEMQGVVCSTRPMRIGPAANKNLGTGTGT---------------------------QP 256
A+ +QG S P+RI A + TG+ T +
Sbjct: 74 AIESLQGFPLSGNPLRIEFAKAEKSSTGSRTDDIYRHDEQRSAARGSSFVQRDSRMRYES 133
Query: 257 KASYQNSQGPQNENDPNNTTIFVGNLDPNVTDDHLRQVFGLYGDLVHVKIPQGKRCGFVQ 316
+Y S+ +P+ V D LR VF +G++ V + G+ FVQ
Sbjct: 134 PDTYSKSKMNDRNAEPSEVLYIGFPASLKVDDALLRNVFSSFGEITKVTVFPGRSYAFVQ 193
Query: 317 FADRSCAEEALRVLNGTLLGGQNVRLSWGRS 347
F + A +A L G L G V + + +S
Sbjct: 194 FRNLMAACKAKESLQGKLFGNPRVHICFAKS 224
>AT5G04280.1 | Symbols: | glycine-rich RNA-binding protein |
chr5:1192462-1195414 FORWARD
Length = 310
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 4/91 (4%)
Query: 168 IFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTE 227
IFVG L+ +VTD L F +R+ + +++++R T R++G+GF+ FAD ++ E
Sbjct: 9 IFVGGLSPEVTDRDLERAF-SRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 228 MQGVVCSTRPM---RIGPAANKNLGTGTGTQ 255
M G R + R P ++ G G++
Sbjct: 68 MHGRDFGDRVISVNRAEPKLGRDDGESHGSR 98
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 273 NNTTIFVGNLDPNVTDDHLRQVFGLYGDLVHVKI------PQGKRCGFVQFADRSCAEEA 326
+ IFVG L P VTD L + F +GD++ +I + + GF+ FADR +E+
Sbjct: 5 EGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDES 64
Query: 327 LRVLNGTLLGGQNV 340
+R ++G G + +
Sbjct: 65 IREMHGRDFGDRVI 78
>AT3G26120.1 | Symbols: TEL1 | TEL1 (TERMINAL EAR1-LIKE 1); RNA
binding | chr3:9547635-9550423 FORWARD
Length = 615
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 273 NNTTIFVGNLDPNVTDDHLRQVFGLYGDLVHVK-IPQGKRCGFVQFADRSCAEEALRVLN 331
N T+ + NLDP V+ LRQ+F +YG + ++ P K FV+F D A A +N
Sbjct: 211 NQGTLVIFNLDPEVSSITLRQIFQVYGPIKELRETPYKKHQRFVEFYDVRDAARAFDRMN 270
Query: 332 GTLLGGQNVRLSWGR 346
G +GG+ V + + R
Sbjct: 271 GKEIGGKQVVIEFSR 285
>AT3G56860.2 | Symbols: UBA2A | UBA2A; AU-rich element binding / RNA
binding | chr3:21061687-21063123 REVERSE
Length = 478
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 76/174 (43%), Gaps = 26/174 (14%)
Query: 72 RTLWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQ 131
R +++ L + L + F GE+ K + +K + +S+GYGF+ + SR+GA L+
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALK 199
Query: 132 TYNGTIMPNGGQNFRLNWATFSAGG---------------ERRHDDSPDYT---IFVGDL 173
I R+ ++ G +H +S ++T I+V ++
Sbjct: 200 QPQKKI------GSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNS-EHTQKKIYVSNV 252
Query: 174 AADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTE 227
A++ L +F +++ ++ + +D+ T R KG+ + RA+ E
Sbjct: 253 GAELDPQKLL-MFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEE 305
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 85/217 (39%), Gaps = 24/217 (11%)
Query: 161 DDSPDY-TIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADES 219
D+ P + IFV L D L E F+ +Y ++ K V D+++ ++KGYGF+ + S
Sbjct: 134 DEDPVHRKIFVHGLGWDTKTETLIEAFK-QYGEIEDCKAVFDKISGKSKGYGFILYKSRS 192
Query: 220 EQVRAMTEMQGVVCS----TRPMRIGPAANKNLGTGTGTQPKASYQNSQGPQNENDPNNT 275
A+ + Q + S + GP A + NS+ Q +
Sbjct: 193 GARNALKQPQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKK------ 246
Query: 276 TIFVGNLDPNVTDDHLRQVFGLYGDLVHVKIP----QGKRCGFVQFADRS------CAEE 325
I+V N+ + L F +G++ + G+ GF F +S EE
Sbjct: 247 -IYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEE 305
Query: 326 ALRVLNGTLLGGQNVRLSWGRSPSNKQTQSDPSQWNN 362
+ G +L Q + + +Q +P +NN
Sbjct: 306 PHKTFEGHILHCQKA-IDGPKPGKQQQHHHNPHAYNN 341
>AT3G56860.1 | Symbols: UBA2A | UBA2A; RNA binding |
chr3:21061687-21063123 REVERSE
Length = 478
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 76/174 (43%), Gaps = 26/174 (14%)
Query: 72 RTLWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQ 131
R +++ L + L + F GE+ K + +K + +S+GYGF+ + SR+GA L+
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALK 199
Query: 132 TYNGTIMPNGGQNFRLNWATFSAGG---------------ERRHDDSPDYT---IFVGDL 173
I R+ ++ G +H +S ++T I+V ++
Sbjct: 200 QPQKKI------GSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNS-EHTQKKIYVSNV 252
Query: 174 AADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTE 227
A++ L +F +++ ++ + +D+ T R KG+ + RA+ E
Sbjct: 253 GAELDPQKLL-MFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEE 305
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 85/217 (39%), Gaps = 24/217 (11%)
Query: 161 DDSPDY-TIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADES 219
D+ P + IFV L D L E F+ +Y ++ K V D+++ ++KGYGF+ + S
Sbjct: 134 DEDPVHRKIFVHGLGWDTKTETLIEAFK-QYGEIEDCKAVFDKISGKSKGYGFILYKSRS 192
Query: 220 EQVRAMTEMQGVVCS----TRPMRIGPAANKNLGTGTGTQPKASYQNSQGPQNENDPNNT 275
A+ + Q + S + GP A + NS+ Q +
Sbjct: 193 GARNALKQPQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKK------ 246
Query: 276 TIFVGNLDPNVTDDHLRQVFGLYGDLVHVKIP----QGKRCGFVQFADRS------CAEE 325
I+V N+ + L F +G++ + G+ GF F +S EE
Sbjct: 247 -IYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEE 305
Query: 326 ALRVLNGTLLGGQNVRLSWGRSPSNKQTQSDPSQWNN 362
+ G +L Q + + +Q +P +NN
Sbjct: 306 PHKTFEGHILHCQKA-IDGPKPGKQQQHHHNPHAYNN 341
>AT3G56860.3 | Symbols: UBA2A | UBA2A; RNA binding |
chr3:21061687-21063123 REVERSE
Length = 478
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 76/174 (43%), Gaps = 26/174 (14%)
Query: 72 RTLWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQ 131
R +++ L + L + F GE+ K + +K + +S+GYGF+ + SR+GA L+
Sbjct: 140 RKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALK 199
Query: 132 TYNGTIMPNGGQNFRLNWATFSAGG---------------ERRHDDSPDYT---IFVGDL 173
I R+ ++ G +H +S ++T I+V ++
Sbjct: 200 QPQKKI------GSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNS-EHTQKKIYVSNV 252
Query: 174 AADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTE 227
A++ L +F +++ ++ + +D+ T R KG+ + RA+ E
Sbjct: 253 GAELDPQKLL-MFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEE 305
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 85/217 (39%), Gaps = 24/217 (11%)
Query: 161 DDSPDY-TIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADES 219
D+ P + IFV L D L E F+ +Y ++ K V D+++ ++KGYGF+ + S
Sbjct: 134 DEDPVHRKIFVHGLGWDTKTETLIEAFK-QYGEIEDCKAVFDKISGKSKGYGFILYKSRS 192
Query: 220 EQVRAMTEMQGVVCS----TRPMRIGPAANKNLGTGTGTQPKASYQNSQGPQNENDPNNT 275
A+ + Q + S + GP A + NS+ Q +
Sbjct: 193 GARNALKQPQKKIGSRMTACQLASKGPVFGGAPIAAAAVSAPAQHSNSEHTQKK------ 246
Query: 276 TIFVGNLDPNVTDDHLRQVFGLYGDLVHVKIP----QGKRCGFVQFADRS------CAEE 325
I+V N+ + L F +G++ + G+ GF F +S EE
Sbjct: 247 -IYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEE 305
Query: 326 ALRVLNGTLLGGQNVRLSWGRSPSNKQTQSDPSQWNN 362
+ G +L Q + + +Q +P +NN
Sbjct: 306 PHKTFEGHILHCQKA-IDGPKPGKQQQHHHNPHAYNN 341
>AT3G53460.2 | Symbols: CP29 | CP29 (chloroplast 29 kDa
ribonucleoprotein); RNA binding / poly(U) binding |
chr3:19830716-19832401 REVERSE
Length = 342
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 159 RHDDSPDYTIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADE 218
R+ SPD +FVG+L+ +V L ++F + N V+ +V+ D++T R++G+GFV +
Sbjct: 92 RNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGN-VEMVEVIYDKVTGRSRGFGFVTMSTA 150
Query: 219 SEQVRAMTEMQGVVCSTRPMRI--GPAANK 246
+E A + G RP+R+ GP K
Sbjct: 151 AEVEAAAQQFNGYEFEGRPLRVNAGPPPPK 180
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 168 IFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTE 227
++VG+L+ V D L +F + V+ A+V+ DR + R+KG+GFV + E +A+
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVE-ARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 228 MQGVVCSTRPMRIGPA 243
+ G R +R+ A
Sbjct: 318 LNGADLDGRQIRVSEA 333
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%)
Query: 74 LWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQTY 133
L++G+L + +D L Q F G + V+VI +K T +S G+GF+ ++ A E Q +
Sbjct: 101 LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 160
Query: 134 NG 135
NG
Sbjct: 161 NG 162
>AT3G53460.1 | Symbols: CP29 | CP29 (chloroplast 29 kDa
ribonucleoprotein); RNA binding / poly(U) binding |
chr3:19830716-19832401 REVERSE
Length = 342
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 159 RHDDSPDYTIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADE 218
R+ SPD +FVG+L+ +V L ++F + N V+ +V+ D++T R++G+GFV +
Sbjct: 92 RNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGN-VEMVEVIYDKVTGRSRGFGFVTMSTA 150
Query: 219 SEQVRAMTEMQGVVCSTRPMRI--GPAANK 246
+E A + G RP+R+ GP K
Sbjct: 151 AEVEAAAQQFNGYEFEGRPLRVNAGPPPPK 180
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 168 IFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTE 227
++VG+L+ V D L +F + V+ A+V+ DR + R+KG+GFV + E +A+
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVE-ARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 228 MQGVVCSTRPMRIGPA 243
+ G R +R+ A
Sbjct: 318 LNGADLDGRQIRVSEA 333
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%)
Query: 74 LWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQTY 133
L++G+L + +D L Q F G + V+VI +K T +S G+GF+ ++ A E Q +
Sbjct: 101 LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQF 160
Query: 134 NG 135
NG
Sbjct: 161 NG 162
>AT4G39260.3 | Symbols: GR-RBP8, ATGRP8, CCR1 | ATGRP8/GR-RBP8
(COLD, CIRCADIAN RHYTHM, AND RNA BINDING 1, GLYCINE-RICH
PROTEIN 8); RNA binding | chr4:18274160-18274952 REVERSE
Length = 92
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 165 DYTIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRA 224
+Y FVG LA D L F +++ V +K++ DR + R++G+GFV F DE A
Sbjct: 5 EYRCFVGGLAWATNDEDLQRTF-SQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDA 63
Query: 225 MTEMQGVVCSTRPMRIGPAANKNLGTG 251
+ EM G R + + A ++ G G
Sbjct: 64 IEEMNGKELDGRVITVNEAQSRGSGGG 90
>AT5G55550.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:22519303-22520884 REVERSE
Length = 448
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 77/181 (42%), Gaps = 21/181 (11%)
Query: 168 IFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTE 227
+F+G ++ D + L + F + Y V A ++ DR T R +G+GF+ FAD R + +
Sbjct: 8 LFIGGISWDTDEERLRDYF-SNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 228 MQGVVCST-RPMRIGPAANKNLGTGTGTQPKASYQNSQGPQNENDPNNTTIFVGNLDPNV 286
+ T + P ++ + + AS + P + IFVG L ++
Sbjct: 67 KHIIDGRTVEAKKAVPRDDQQV-----LKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSI 121
Query: 287 TDDHLRQVFGLYGDLVHVKI--------PQGKRCGFVQFADRSCAEEALRV----LNGTL 334
T++ + F +G + V + P+G GF+ F + L LNG L
Sbjct: 122 TEEEFKNYFDQFGTIADVVVMYDHNTQRPRG--FGFITFDSDDAVDRVLHKTFHELNGKL 179
Query: 335 L 335
+
Sbjct: 180 V 180
>AT5G10800.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:3412899-3418383 REVERSE
Length = 947
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Query: 265 GPQNENDPNNTTIFVGNLDPNVTDDHLRQVFGLYGDLVHVKI---------PQGKRCGFV 315
G ++ DP T ++V NL V ++ L + FG +G + VKI + + CGFV
Sbjct: 177 GSLDDGDPQTTNLYVVNLSSKVDENFLLRTFGRFGPIASVKIMWPRTEEEKRRERHCGFV 236
Query: 316 QFADRSCAEEALRVLNGTLLGGQNVRLSWGR 346
F +R+ E A + G ++ +++ WG+
Sbjct: 237 AFMNRADGEAAKEKMQGIIVYEYELKIGWGK 267
>AT5G55550.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:22519361-22520884 REVERSE
Length = 460
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 77/181 (42%), Gaps = 21/181 (11%)
Query: 168 IFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTE 227
+F+G ++ D + L + F + Y V A ++ DR T R +G+GF+ FAD R + +
Sbjct: 8 LFIGGISWDTDEERLRDYF-SNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 228 MQGVVCST-RPMRIGPAANKNLGTGTGTQPKASYQNSQGPQNENDPNNTTIFVGNLDPNV 286
+ T + P ++ + + AS + P + IFVG L ++
Sbjct: 67 KHIIDGRTVEAKKAVPRDDQQV-----LKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSI 121
Query: 287 TDDHLRQVFGLYGDLVHVKI--------PQGKRCGFVQFADRSCAEEALRV----LNGTL 334
T++ + F +G + V + P+G GF+ F + L LNG L
Sbjct: 122 TEEEFKNYFDQFGTIADVVVMYDHNTQRPRG--FGFITFDSDDAVDRVLHKTFHELNGKL 179
Query: 335 L 335
+
Sbjct: 180 V 180
>AT5G55550.3 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:22519361-22520884 REVERSE
Length = 460
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 77/181 (42%), Gaps = 21/181 (11%)
Query: 168 IFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTE 227
+F+G ++ D + L + F + Y V A ++ DR T R +G+GF+ FAD R + +
Sbjct: 8 LFIGGISWDTDEERLRDYF-SNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 228 MQGVVCST-RPMRIGPAANKNLGTGTGTQPKASYQNSQGPQNENDPNNTTIFVGNLDPNV 286
+ T + P ++ + + AS + P + IFVG L ++
Sbjct: 67 KHIIDGRTVEAKKAVPRDDQQV-----LKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSI 121
Query: 287 TDDHLRQVFGLYGDLVHVKI--------PQGKRCGFVQFADRSCAEEALRV----LNGTL 334
T++ + F +G + V + P+G GF+ F + L LNG L
Sbjct: 122 TEEEFKNYFDQFGTIADVVVMYDHNTQRPRG--FGFITFDSDDAVDRVLHKTFHELNGKL 179
Query: 335 L 335
+
Sbjct: 180 V 180
>AT4G09040.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:5795072-5797312 REVERSE
Length = 304
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%)
Query: 164 PDYTIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVR 223
P + +FV +LA + HL E F +V +V+ R+ GYGFV F + +
Sbjct: 187 PTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEA 246
Query: 224 AMTEMQGVVCSTRPMRIG 241
A+ E QG RP+R+
Sbjct: 247 ALIEFQGKDFLGRPIRLA 264
>AT1G16610.1 | Symbols: SR45 | SR45 (arginine/serine-rich 45); RNA
binding | chr1:5675918-5678679 REVERSE
Length = 414
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 49/84 (58%), Gaps = 10/84 (11%)
Query: 276 TIFVGNLDPNVTDDHLRQVFGLYGDLVHVKI--------PQGKRCGFVQFADRSCAEEAL 327
+ V +L NV + HL+++FG +G+++HV+I P+G G+V+F R+ AE+A
Sbjct: 99 VLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRG--HGYVEFKARADAEKAQ 156
Query: 328 RVLNGTLLGGQNVRLSWGRSPSNK 351
++G + G+ V+ ++ P K
Sbjct: 157 LYMDGAQIDGKVVKATFTLPPRQK 180
>AT1G16610.2 | Symbols: SR45 | SR45 (arginine/serine-rich 45); RNA
binding | chr1:5675918-5678679 REVERSE
Length = 407
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 49/84 (58%), Gaps = 10/84 (11%)
Query: 276 TIFVGNLDPNVTDDHLRQVFGLYGDLVHVKI--------PQGKRCGFVQFADRSCAEEAL 327
+ V +L NV + HL+++FG +G+++HV+I P+G G+V+F R+ AE+A
Sbjct: 99 VLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRG--HGYVEFKARADAEKAQ 156
Query: 328 RVLNGTLLGGQNVRLSWGRSPSNK 351
++G + G+ V+ ++ P K
Sbjct: 157 LYMDGAQIDGKVVKATFTLPPRQK 180
>AT1G74230.1 | Symbols: GR-RBP5 | GR-RBP5 (glycine-rich RNA-binding
protein 5); RNA binding | chr1:27919007-27920518 FORWARD
Length = 289
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 168 IFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTE 227
IFVG ++ ++ L E F ++Y V AK+++DR T R++G+ FV F E AM +
Sbjct: 36 IFVGGISYSTDEFGLREAF-SKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM-Q 93
Query: 228 MQGVVCSTRPMRI 240
+ G R +R+
Sbjct: 94 LDGQDLHGRRIRV 106
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 74 LWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQTY 133
+++G + Y DE L + F+ GE+ K+I ++ T +S G+ F+ FTS A +Q
Sbjct: 36 IFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ-L 94
Query: 134 NGTIMPNGGQNFRLNWAT 151
+G + G+ R+N+AT
Sbjct: 95 DGQDLH--GRRIRVNYAT 110
>AT1G60650.2 | Symbols: | glycine-rich RNA-binding protein,
putative | chr1:22343754-22345813 FORWARD
Length = 292
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
Query: 157 ERRHDDSPDYTIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFA 216
+R +D + + IFVG L+ DVT+ L F RY + ++++ R T R +G+GF+ F
Sbjct: 3 DRENDGNLESRIFVGGLSWDVTERQLESTF-DRYGKITECQIMVGRDTGRPRGFGFITFT 61
Query: 217 DESEQVRAMTEMQGVVCSTRPMRIGPAANKNLGTGTGTQPKASYQNSQGPQNEND 271
D A+ M G + + + A K G K +S+G E++
Sbjct: 62 DRRGADDAIKHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGTEDE 116
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 269 ENDPN-NTTIFVGNLDPNVTDDHLRQVFGLYGDLVHVKIPQGKRC------GFVQFADRS 321
END N + IFVG L +VT+ L F YG + +I G+ GF+ F DR
Sbjct: 5 ENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRR 64
Query: 322 CAEEALRVLNGTLLGGQNV 340
A++A++ ++G LG + +
Sbjct: 65 GADDAIKHMHGRELGNKVI 83
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 74 LWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQTY 133
+++G L + + E L F G++ +++ ++T + G+GF+ FT R GA+ ++
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73
Query: 134 NGTIMPNGGQNFRLNWATFSAGGE 157
+G + G + +N A GGE
Sbjct: 74 HGREL--GNKVISVNKAEPKVGGE 95
>AT1G60650.1 | Symbols: | glycine-rich RNA-binding protein,
putative | chr1:22343754-22345813 FORWARD
Length = 292
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
Query: 157 ERRHDDSPDYTIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFA 216
+R +D + + IFVG L+ DVT+ L F RY + ++++ R T R +G+GF+ F
Sbjct: 3 DRENDGNLESRIFVGGLSWDVTERQLESTF-DRYGKITECQIMVGRDTGRPRGFGFITFT 61
Query: 217 DESEQVRAMTEMQGVVCSTRPMRIGPAANKNLGTGTGTQPKASYQNSQGPQNEND 271
D A+ M G + + + A K G K +S+G E++
Sbjct: 62 DRRGADDAIKHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGTEDE 116
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 269 ENDPN-NTTIFVGNLDPNVTDDHLRQVFGLYGDLVHVKIPQGKRC------GFVQFADRS 321
END N + IFVG L +VT+ L F YG + +I G+ GF+ F DR
Sbjct: 5 ENDGNLESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRR 64
Query: 322 CAEEALRVLNGTLLGGQNV 340
A++A++ ++G LG + +
Sbjct: 65 GADDAIKHMHGRELGNKVI 83
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 74 LWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQTY 133
+++G L + + E L F G++ +++ ++T + G+GF+ FT R GA+ ++
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73
Query: 134 NGTIMPNGGQNFRLNWATFSAGGE 157
+G + G + +N A GGE
Sbjct: 74 HGREL--GNKVISVNKAEPKVGGE 95
>AT4G09040.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:5795072-5797190 REVERSE
Length = 244
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%)
Query: 164 PDYTIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVR 223
P + +FV +LA + HL E F +V +V+ R+ GYGFV F + +
Sbjct: 127 PTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEA 186
Query: 224 AMTEMQGVVCSTRPMRIG 241
A+ E QG RP+R+
Sbjct: 187 ALIEFQGKDFLGRPIRLA 204
>AT5G24440.1 | Symbols: CID13 | CID13 (CTC-Interacting Domain 13);
RNA binding | chr5:8345405-8347779 REVERSE
Length = 320
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 87/200 (43%), Gaps = 28/200 (14%)
Query: 159 RHDDSPDYTIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKG---YGFVRF 215
+++D T++V D+ VT+ L +F + +VV R+ K + F+ F
Sbjct: 130 QNEDMIKRTVYVSDIDNQVTEEQLASLF------LSCGQVVDCRMCGDYKSILRFAFIEF 183
Query: 216 ADESEQVRAMTEMQGVVCSTRPMRIGPAANKNLGTGTGTQPKASYQNSQGPQNENDPNNT 275
D +E R+ G + + P+R+ + P++ ++E +
Sbjct: 184 TD-AEGARSALRKSGTMFGSHPIRVFMSKTAIAPVNPSFLPQS--------KDELEKCGK 234
Query: 276 TIFVGNLDPNVTDDHLRQVFG-LYGDLVHVKIP----QGKRCGFVQFADRSCAEEALRVL 330
T++ N+D VT L F + G++ H+++ R FV+F AE A+ L
Sbjct: 235 TVYCTNIDKEVTKMELENFFKTVCGEVHHLRLLGDFYHQTRIAFVEF---KLAESAISAL 291
Query: 331 N--GTLLGGQNVRLSWGRSP 348
N G +LG +R+S ++P
Sbjct: 292 NCSGVVLGELPIRVSPSKTP 311
>AT1G03457.1 | Symbols: | RNA-binding protein, putative |
chr1:861109-864019 REVERSE
Length = 429
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 87/210 (41%), Gaps = 35/210 (16%)
Query: 156 GERRHDDSPDYTIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRF 215
E ++ +FVG + +T+ L +FR ++ V ++ ++ T +G F+
Sbjct: 2 AEETMENEERVKLFVGQVPKHMTEIQLLTLFR-EFSIVNEVNIIKEKTTRAPRGCCFL-- 58
Query: 216 ADESEQVRAMTEMQGVVCSTRP---MRIGPAANKNLGTGTGTQPKASYQNSQGPQNENDP 272
C TR I NK G + + Y + + + E+
Sbjct: 59 ----------------TCPTREDADKVINSFHNKKTLPGASSPLQVKYADGELERLEHK- 101
Query: 273 NNTTIFVGNLDPNVTDDHLRQVFGLYGDLVHVKIPQG-----KRCGFVQFADRSCAEEAL 327
+FVG L NV++ ++ +F YG + ++I +G K C F+++ + A A+
Sbjct: 102 ----LFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAM 157
Query: 328 RVLNGT-LLGGQNVRL--SWGRSPSNKQTQ 354
LNG ++ G NV L W + +Q +
Sbjct: 158 EALNGRHIMEGANVPLIVKWADTEKERQAR 187
>AT4G39260.1 | Symbols: GR-RBP8, ATGRP8, CCR1 | ATGRP8/GR-RBP8
(COLD, CIRCADIAN RHYTHM, AND RNA BINDING 1, GLYCINE-RICH
PROTEIN 8); RNA binding | chr4:18274160-18274952 REVERSE
Length = 169
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 165 DYTIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRA 224
+Y FVG LA D L F +++ V +K++ DR + R++G+GFV F DE A
Sbjct: 5 EYRCFVGGLAWATNDEDLQRTF-SQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDA 63
Query: 225 MTEMQGVVCSTRPMRIGPA 243
+ EM G R + + A
Sbjct: 64 IEEMNGKELDGRVITVNEA 82
>AT4G13860.1 | Symbols: | glycine-rich RNA-binding protein,
putative | chr4:8022597-8023158 FORWARD
Length = 87
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 275 TTIFVGNLDPNVTDDHLRQVFGLYGDLVHVKI------PQGKRCGFVQFADRSCAEEALR 328
T ++VGNL P TDD LR+ F YG++V + + + GFV ++ S AE A+
Sbjct: 3 TRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVS 62
Query: 329 VLNGTLLGGQNVRLSW 344
++G L G+ V +
Sbjct: 63 GMDGKELNGRRVSVKL 78
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 168 IFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTE 227
++VG+L+ TD L E F + Y +V A V+ DR T R++G+GFV ++ SE A++
Sbjct: 5 VYVGNLSPTTTDDMLREAF-SGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 228 MQG 230
M G
Sbjct: 64 MDG 66
>AT5G44200.2 | Symbols: ATCBP20, CBP20 | CBP20 (CAP-BINDING PROTEIN
20) | chr5:17819289-17821102 REVERSE
Length = 257
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 10/103 (9%)
Query: 73 TLWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQT 132
T++IG++ ++ E LY+ F+ GE+ + + +KNT G+ F+ F SR E ++
Sbjct: 35 TVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVKY 94
Query: 133 YNGTIMPN---------GGQNFRLNWATFSAGGERRHDDSPDY 166
+GTI+ + G Q R W +GG+ R + DY
Sbjct: 95 ISGTILDDRPIRVDFDWGFQEGR-QWGRGRSGGQVRDEYRTDY 136
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 19/111 (17%)
Query: 265 GPQNENDPN---NTTIFVGNLDPNVTDDHLRQVFGLYGDLVHVKIPQGKR----CGF--V 315
G Q E D +TT+++GN+ T++ L ++F G++ + + K CGF V
Sbjct: 21 GTQEEFDEALRASTTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFV 80
Query: 316 QFADRSCAEEALRVLNGTLLGGQNVRLS----------WGRSPSNKQTQSD 356
F R E+A++ ++GT+L + +R+ WGR S Q + +
Sbjct: 81 LFYSREDTEDAVKYISGTILDDRPIRVDFDWGFQEGRQWGRGRSGGQVRDE 131
>AT5G44200.1 | Symbols: ATCBP20, CBP20 | CBP20 (CAP-BINDING PROTEIN
20); RNA binding | chr5:17819289-17821102 REVERSE
Length = 257
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 10/103 (9%)
Query: 73 TLWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQT 132
T++IG++ ++ E LY+ F+ GE+ + + +KNT G+ F+ F SR E ++
Sbjct: 35 TVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVKY 94
Query: 133 YNGTIMPN---------GGQNFRLNWATFSAGGERRHDDSPDY 166
+GTI+ + G Q R W +GG+ R + DY
Sbjct: 95 ISGTILDDRPIRVDFDWGFQEGR-QWGRGRSGGQVRDEYRTDY 136
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 19/111 (17%)
Query: 265 GPQNENDPN---NTTIFVGNLDPNVTDDHLRQVFGLYGDLVHVKIPQGKR----CGF--V 315
G Q E D +TT+++GN+ T++ L ++F G++ + + K CGF V
Sbjct: 21 GTQEEFDEALRASTTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFV 80
Query: 316 QFADRSCAEEALRVLNGTLLGGQNVRLS----------WGRSPSNKQTQSD 356
F R E+A++ ++GT+L + +R+ WGR S Q + +
Sbjct: 81 LFYSREDTEDAVKYISGTILDDRPIRVDFDWGFQEGRQWGRGRSGGQVRDE 131
>AT4G39260.2 | Symbols: GR-RBP8, ATGRP8, CCR1 | ATGRP8/GR-RBP8
(COLD, CIRCADIAN RHYTHM, AND RNA BINDING 1, GLYCINE-RICH
PROTEIN 8); RNA binding | chr4:18274160-18274952 REVERSE
Length = 126
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 165 DYTIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRA 224
+Y FVG LA D L F +++ V +K++ DR + R++G+GFV F DE A
Sbjct: 5 EYRCFVGGLAWATNDEDLQRTF-SQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDA 63
Query: 225 MTEMQGVVCSTRPMRIGPA 243
+ EM G R + + A
Sbjct: 64 IEEMNGKELDGRVITVNEA 82
>AT2G21660.2 | Symbols: GR-RBP7, GRP7, CCR2, ATGRP7 | ATGRP7 (COLD,
CIRCADIAN RHYTHM, AND RNA BINDING 2); RNA binding |
chr2:9272557-9273396 REVERSE
Length = 159
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 165 DYTIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRA 224
+Y FVG LA D L F +Y V +K++ DR T R++G+GFV F DE A
Sbjct: 7 EYRCFVGGLAWATDDRALETAF-AQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDA 65
Query: 225 MTEMQGVVCSTRPMRIGPA 243
+ M G R + + A
Sbjct: 66 IEGMNGQDLDGRSITVNEA 84
>AT2G21660.1 | Symbols: GR-RBP7, GRP7, CCR2, ATGRP7 | ATGRP7 (COLD,
CIRCADIAN RHYTHM, AND RNA BINDING 2); RNA binding /
double-stranded DNA binding / single-stranded DNA
binding | chr2:9272557-9273396 REVERSE
Length = 176
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 165 DYTIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRA 224
+Y FVG LA D L F +Y V +K++ DR T R++G+GFV F DE A
Sbjct: 7 EYRCFVGGLAWATDDRALETAF-AQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDA 65
Query: 225 MTEMQGVVCSTRPMRIGPA 243
+ M G R + + A
Sbjct: 66 IEGMNGQDLDGRSITVNEA 84
>AT2G47310.1 | Symbols: | flowering time control protein-related /
FCA gamma-related | chr2:19430861-19433916 FORWARD
Length = 512
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 82/194 (42%), Gaps = 28/194 (14%)
Query: 168 IFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESE---QVRA 224
++V ++ T+Y + +VF +Y +V + D++T Y F+++ E + A
Sbjct: 112 LYVAPISKTATEYDIRQVFE-KYGNVTEIILPKDKMTGERAAYCFIKYKKVEEGNAAIAA 170
Query: 225 MTEMQGVVCSTRPMRIGPAANKNLGTGTGTQPKASYQNSQGPQNENDPNNTTIFVGNLDP 284
+TE P+++ A + G P+N ++V L+
Sbjct: 171 LTEQFTFPGEMLPVKVRFAEAERERIGFAPV--------------QLPDNPKLYVRCLNK 216
Query: 285 NVTDDHLRQVFGLYGDL--VHVKIPQGKRC---GFVQFADRSCAEEALRVLNG--TLLGG 337
T + +VF YG + +++ + K C FVQF+ + A A++ LNG T+ G
Sbjct: 217 QTTKMEVNEVFSRYGIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKALNGLFTIRGS 276
Query: 338 QN---VRLSWGRSP 348
VR + + P
Sbjct: 277 DQPLIVRFADPKKP 290
>AT5G51300.3 | Symbols: | splicing factor-related |
chr5:20867107-20869521 REVERSE
Length = 804
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 247 NLGTGTGTQPKASYQNSQGPQNENDPNNTTIFVGNLDPNVTDDHLRQVFGLYGDLVHVKI 306
N G G P ++ P E D T +++G L P + DD L +F +G++V K+
Sbjct: 454 NAGNGASAHPGLGSTPTKPPSKEYD--ETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKV 511
Query: 307 PQ------GKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRL 342
+ K GFV++AD A A++ +NG G+ + +
Sbjct: 512 IKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAV 553
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%)
Query: 74 LWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQTY 133
L+IG L ++++ L F+ GE+ KVI+++ T S+GYGF+++ A +Q
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 134 NG 135
NG
Sbjct: 542 NG 543
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 168 IFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTE 227
+++G L + D L +F + + + AKV+ DR+T +KGYGFV++AD A+
Sbjct: 482 LYIGFLPPMLEDDGLINLFSS-FGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQA 540
Query: 228 MQG 230
M G
Sbjct: 541 MNG 543
>AT5G51300.2 | Symbols: | splicing factor-related |
chr5:20867107-20869521 REVERSE
Length = 804
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 247 NLGTGTGTQPKASYQNSQGPQNENDPNNTTIFVGNLDPNVTDDHLRQVFGLYGDLVHVKI 306
N G G P ++ P E D T +++G L P + DD L +F +G++V K+
Sbjct: 454 NAGNGASAHPGLGSTPTKPPSKEYD--ETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKV 511
Query: 307 PQ------GKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRL 342
+ K GFV++AD A A++ +NG G+ + +
Sbjct: 512 IKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAV 553
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%)
Query: 74 LWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQTY 133
L+IG L ++++ L F+ GE+ KVI+++ T S+GYGF+++ A +Q
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 134 NG 135
NG
Sbjct: 542 NG 543
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 168 IFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTE 227
+++G L + D L +F + + + AKV+ DR+T +KGYGFV++AD A+
Sbjct: 482 LYIGFLPPMLEDDGLINLFSS-FGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQA 540
Query: 228 MQG 230
M G
Sbjct: 541 MNG 543
>AT5G51300.1 | Symbols: | splicing factor-related |
chr5:20867107-20869521 REVERSE
Length = 804
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 247 NLGTGTGTQPKASYQNSQGPQNENDPNNTTIFVGNLDPNVTDDHLRQVFGLYGDLVHVKI 306
N G G P ++ P E D T +++G L P + DD L +F +G++V K+
Sbjct: 454 NAGNGASAHPGLGSTPTKPPSKEYD--ETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKV 511
Query: 307 PQ------GKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRL 342
+ K GFV++AD A A++ +NG G+ + +
Sbjct: 512 IKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAV 553
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%)
Query: 74 LWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQTY 133
L+IG L ++++ L F+ GE+ KVI+++ T S+GYGF+++ A +Q
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 134 NG 135
NG
Sbjct: 542 NG 543
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 168 IFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTE 227
+++G L + D L +F + + + AKV+ DR+T +KGYGFV++AD A+
Sbjct: 482 LYIGFLPPMLEDDGLINLFSS-FGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQA 540
Query: 228 MQG 230
M G
Sbjct: 541 MNG 543
>AT3G08000.1 | Symbols: | RNA-binding protein, putative |
chr3:2555040-2555835 REVERSE
Length = 143
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 168 IFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTE 227
+F+G L+ V + L + F + + V ++ D+ + R++G+GFV FA+E + + A
Sbjct: 43 LFIGGLSWSVDEQSLKDAFSS-FGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDA 101
Query: 228 MQGVVCSTRPMRIGPAANKNLG 249
M G RP+RI A + G
Sbjct: 102 MDGKGLLGRPLRISFALERVRG 123
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 74 LWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQTY 133
L+IG L + +DE L F+ GE+A V++ +K + +S G+GF++F A
Sbjct: 43 LFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAM 102
Query: 134 NGTIMPNGGQNFRLNWA 150
+G + G+ R+++A
Sbjct: 103 DGKGLL--GRPLRISFA 117
>AT4G20030.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:10846372-10847256 FORWARD
Length = 152
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 44/70 (62%), Gaps = 5/70 (7%)
Query: 74 LWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQT- 132
+ + +L + E++L + F+ GE+A VK+I+++ +S+GY F++FTS+ A ++T
Sbjct: 42 IMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETM 101
Query: 133 ----YNGTIM 138
YNG ++
Sbjct: 102 DRRMYNGRMI 111
>AT3G46020.1 | Symbols: | RNA-binding protein, putative |
chr3:16923496-16924235 REVERSE
Length = 102
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 168 IFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTE 227
+FV L+A TD L ++F + + +K A+++ D T R KG+GF+ F E + +A+
Sbjct: 9 LFVSRLSAYTTDQSLRQLF-SPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKS 67
Query: 228 MQGVVCSTRPMRIGPAAN 245
+ G + R + + A N
Sbjct: 68 LDGKIVDGRLIFVEVAKN 85
>AT3G18610.1 | Symbols: ATRANGAP1 | ATRANGAP1 (RAN GTPASE-ACTIVATING
PROTEIN 1); nucleic acid binding | chr3:6404276-6407828
REVERSE
Length = 636
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 75/150 (50%), Gaps = 12/150 (8%)
Query: 72 RTLWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQ 131
+TL+ G+L Y + + + F GE+ V+ + + + +GYG +EF S A++ L+
Sbjct: 384 KTLFAGNLSYQIARSDIENFFKEAGEVVDVR-LSSFDDGSFKGYGHIEFASPEEAQKALE 442
Query: 132 TYNGTIMPNGGQNFRLNWA-----TFSAGGERRHDDSPDYTIFVGDLAADVTDYHLTEVF 186
NG ++ G++ RL+ A ++ R+ + S TI+V ++ + + + +
Sbjct: 443 -MNGKLL--LGRDVRLDLANERGTPRNSNPGRKGEGSQSRTIYVRGFSSSLGEDEIKKEL 499
Query: 187 RTRYNS---VKGAKVVIDRLTSRTKGYGFV 213
R+ ++ V V DR T ++G+ ++
Sbjct: 500 RSHFSKCGEVTRVHVPTDRETGASRGFAYI 529
>AT4G19610.1 | Symbols: | RNA binding | chr4:10677492-10681633
FORWARD
Length = 816
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 75/195 (38%), Gaps = 26/195 (13%)
Query: 164 PDYT----IFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTK----GYGFVRF 215
PD T + V +L+ TD L + F K V I + K GYGFV F
Sbjct: 596 PDVTESNVLNVKNLSFKTTDEGLKKHFTKLVKQGKILSVTIIKHKKNEKYLSSGYGFVEF 655
Query: 216 ADESEQVRAMTEMQGVVCSTRPMRIGPAANKNLGTGTGTQPKASYQNSQGPQNENDPNNT 275
++QG V + + NK + G + D T
Sbjct: 656 DSVETATSVYRDLQGTVLDGHALILRFCENKR-------------SDKVGKDSNKDKPCT 702
Query: 276 TIFVGNLDPNVTDDHLRQVFGLYGDLVHVKIPQ---GKRCG--FVQFADRSCAEEALRVL 330
+ V N+ T LRQ+F +G + +++P+ G+ G FV+F + A A + L
Sbjct: 703 KLHVKNIAFEATKRELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEALNAKKAL 762
Query: 331 NGTLLGGQNVRLSWG 345
T G+++ L W
Sbjct: 763 ASTHFYGRHLVLEWA 777
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 74/165 (44%), Gaps = 10/165 (6%)
Query: 68 PD--EVRTLWIGDLQYWMDENYLYQCF---AHTGELATVKVIRNKNTNQ--SEGYGFLEF 120
PD E L + +L + + L + F G++ +V +I++K + S GYGF+EF
Sbjct: 596 PDVTESNVLNVKNLSFKTTDEGLKKHFTKLVKQGKILSVTIIKHKKNEKYLSSGYGFVEF 655
Query: 121 TSRAGAERILQTYNGTIMPNGGQNFRLNWATFSAG-GERRHDDSPDYTIFVGDLAADVTD 179
S A + + GT++ R S G+ + D P + V ++A + T
Sbjct: 656 DSVETATSVYRDLQGTVLDGHALILRFCENKRSDKVGKDSNKDKPCTKLHVKNIAFEATK 715
Query: 180 YHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRA 224
L ++F + + +K ++ + + GY FV F + E + A
Sbjct: 716 RELRQLF-SPFGQIKSMRLPKKNI-GQYAGYAFVEFVTKQEALNA 758
>AT4G03110.1 | Symbols: | RNA-binding protein, putative |
chr4:1376612-1379275 REVERSE
Length = 441
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 272 PNNTTIFVGNLDPNVTDDHLRQVFGLYGDLVHVKIPQGK-----RC-GFVQFADRSCAEE 325
P +F+ N+ D L F +G ++ K+ K +C GFV + ++ A+
Sbjct: 346 PEGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQN 405
Query: 326 ALRVLNGTLLGGQNVRLSWGRSPSNKQTQSDPS 358
A+ ++NG LGG+ +++ R +N Q S+PS
Sbjct: 406 AIDMMNGRHLGGKKLKVQLKRDSNNGQPSSNPS 438
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 76/170 (44%), Gaps = 26/170 (15%)
Query: 168 IFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTE 227
+FVG + +++ L +F+ + V ++ D++T ++G F+ E + +
Sbjct: 20 LFVGQIPKHMSESQLLTLFQ-EFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVN- 77
Query: 228 MQGVVCSTRPMRIGPAANKNLGTGTGTQPKASYQNSQGPQNENDPNNTTIFVGNLDPNVT 287
C + + P AN L + Y + + + E+ +FVG L NV+
Sbjct: 78 ----ACHNK--KTLPGANSLL--------QVKYADGELERLEHK-----LFVGMLPKNVS 118
Query: 288 DDHLRQVFGLYGDLVHVKIPQG-----KRCGFVQFADRSCAEEALRVLNG 332
+ ++ +F YG + ++I +G K C F+++ + A A+ +NG
Sbjct: 119 EAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESING 168
>AT4G39260.4 | Symbols: GR-RBP8, ATGRP8, CCR1 | ATGRP8/GR-RBP8
(COLD, CIRCADIAN RHYTHM, AND RNA BINDING 1, GLYCINE-RICH
PROTEIN 8); RNA binding | chr4:18274160-18274952 REVERSE
Length = 105
Score = 45.1 bits (105), Expect = 7e-05, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 165 DYTIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRA 224
+Y FVG LA D L F +++ V +K++ DR + R++G+GFV F DE A
Sbjct: 5 EYRCFVGGLAWATNDEDLQRTF-SQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDA 63
Query: 225 MTEM 228
+ EM
Sbjct: 64 IEEM 67
>AT2G46780.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:19236586-19238017 FORWARD
Length = 304
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 8/103 (7%)
Query: 155 GGERRHDDSPDYTIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVR 214
GG D+ IFVG LA + + F ++ + A V+ D+ T R+KGYGFV
Sbjct: 11 GGNNNTTDTKLTKIFVGGLAWETQRDTMRRYFE-QFGEIVEAVVITDKNTGRSKGYGFVT 69
Query: 215 FADESEQVRAMTEMQGVVCSTRPMRIGPAANKNLGTGTGTQPK 257
F + +RA M V+ R AN NL +P+
Sbjct: 70 FKEAEAAMRACQNMNPVIDGRR-------ANCNLACLGAQKPR 105
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%)
Query: 67 TPDEVRTLWIGDLQYWMDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGA 126
T ++ +++G L + + + + F GE+ VI +KNT +S+GYGF+ F A
Sbjct: 17 TDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAA 76
Query: 127 ERILQTYNGTI 137
R Q N I
Sbjct: 77 MRACQNMNPVI 87
>AT5G54580.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:22188558-22189882 FORWARD
Length = 156
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 159 RHDDSPDYTIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADE 218
R P +FV L+ T L F ++ V AKVV DR++ +KG+GFVR+A
Sbjct: 49 RPQAEPSTNLFVSGLSKRTTSEGLRTAF-AQFGEVADAKVVTDRVSGYSKGFGFVRYATL 107
Query: 219 SEQVRAMTEMQG 230
+ + + M G
Sbjct: 108 EDSAKGIAGMDG 119
>AT4G03110.2 | Symbols: | RNA-binding protein, putative |
chr4:1376710-1379275 REVERSE
Length = 439
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/170 (20%), Positives = 73/170 (42%), Gaps = 26/170 (15%)
Query: 168 IFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTE 227
+FVG + +++ L +F+ + V ++ D++T ++G F+ E + +
Sbjct: 20 LFVGQIPKHMSESQLLTLFQ-EFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNA 78
Query: 228 MQGVVCSTRPMRIGPAANKNLGTGTGTQPKASYQNSQGPQNENDPNNTTIFVGNLDPNVT 287
NK G + + Y + + + E+ +FVG L NV+
Sbjct: 79 CH---------------NKKTLPGANSLLQVKYADGELERLEHK-----LFVGMLPKNVS 118
Query: 288 DDHLRQVFGLYGDLVHVKIPQG-----KRCGFVQFADRSCAEEALRVLNG 332
+ ++ +F YG + ++I +G K C F+++ + A A+ +NG
Sbjct: 119 EAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESING 168
>AT5G46840.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:19023289-19024836 FORWARD
Length = 364
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 80/169 (47%), Gaps = 27/169 (15%)
Query: 71 VRTLWIGDLQYWMDENYLYQCFAHTGELATVKV-----------------IRNKNTNQSE 113
+RT+++G+L + + + + F+ GE+ +V++ ++ N S
Sbjct: 33 LRTVFVGNLPLKVKKKVILKEFSKFGEVESVRIRSVPIVDSKRTRKGAIMLKQINEKASS 92
Query: 114 GYGFLEFTSRAGAERILQTYNGTIMPNGGQNFRLNWATFSAGGERRHDDS----PDYTIF 169
+ ++ F + A L +N +++ G + R++ A ++ HDD+ P T+F
Sbjct: 93 VHAYVVFETEQSAAASL-AHNMSLI--DGNHVRVDRACPPRKKQKGHDDTHLYDPKRTVF 149
Query: 170 VGDLAADVTDYHLTEVFRTRY---NSVKGAKVVIDRLTSRTKGYGFVRF 215
+G+L DV D + ++F + NS++ +V+ D + KG +V F
Sbjct: 150 MGNLPFDVKDEEVYQLFTGKSNLENSIEAVRVIRDPHLNIGKGIAYVLF 198
>AT3G13700.2 | Symbols: | RNA-binding protein, putative |
chr3:4490866-4492639 REVERSE
Length = 287
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 275 TTIFVGNLDPNVTDDHLRQVFGLYG--DLVHVKIPQGKRCGFVQFADRSCAEEALRVLNG 332
+T+F+ NL PN T+D L+Q+ Y ++ ++ G F F + A +A+ L G
Sbjct: 205 STLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQG 264
Query: 333 TLLGGQN---VRLSWGRSPSNKQ 352
LL + + + + RS KQ
Sbjct: 265 NLLSSSDRGGMHIEYARSKMRKQ 287
>AT2G21690.1 | Symbols: | RNA-binding protein, putative |
chr2:9277194-9277677 REVERSE
Length = 117
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 165 DYTIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRA 224
+YT FV L D + LT++F +++ +V +K++ DR T +++ +GFV F +E A
Sbjct: 6 EYTCFVRGLDQDTDEKDLTDIF-SKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDA 64
Query: 225 MTEM 228
+ M
Sbjct: 65 IMIM 68
>AT1G60900.1 | Symbols: | U2 snRNP auxiliary factor large subunit,
putative | chr1:22427673-22431471 FORWARD
Length = 589
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 86/219 (39%), Gaps = 28/219 (12%)
Query: 162 DSPDYTIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQ 221
+ PD IFVG L T+ + E+ + + ++G +V DR T +KGY F + D S
Sbjct: 372 EGPD-RIFVGGLPYYFTEVQIRELLES-FGPLRGFNLVKDRETGNSKGYAFCVYQDPSVT 429
Query: 222 VRAMTEMQGVVCSTRPMRIGPAANKNLGTGTGTQPKASYQNSQGPQNEN--DPNNTTIFV 279
A + G+ + + + A + + Y Q P T +
Sbjct: 430 DIACAALNGIKMGDKTLTVRRAIQGAIQPKPEQEEVLLYAQQQIALQRLMFQPGGTPTKI 489
Query: 280 GNLDPNVTDDHL-------------RQVFGLYGDLVHVKIPQ---------GKRCGFVQF 317
L VT D L RQ G +G+LV+V IP+ G F+++
Sbjct: 490 VCLTQVVTADDLRDDEEYAEIMEDMRQEGGKFGNLVNVVIPRPNPDHDPTPGVGKVFLEY 549
Query: 318 ADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQTQSD 356
AD + +A +NG GG V + P +K Q D
Sbjct: 550 ADVDGSSKARSGMNGRKFGGNQVVAVY--YPEDKYAQGD 586
>AT5G46840.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:19022878-19024836 FORWARD
Length = 501
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 80/169 (47%), Gaps = 27/169 (15%)
Query: 71 VRTLWIGDLQYWMDENYLYQCFAHTGELATVKV-----------------IRNKNTNQSE 113
+RT+++G+L + + + + F+ GE+ +V++ ++ N S
Sbjct: 170 LRTVFVGNLPLKVKKKVILKEFSKFGEVESVRIRSVPIVDSKRTRKGAIMLKQINEKASS 229
Query: 114 GYGFLEFTSRAGAERILQTYNGTIMPNGGQNFRLNWATFSAGGERRHDDS----PDYTIF 169
+ ++ F + A L +N +++ G + R++ A ++ HDD+ P T+F
Sbjct: 230 VHAYVVFETEQSAAASL-AHNMSLI--DGNHVRVDRACPPRKKQKGHDDTHLYDPKRTVF 286
Query: 170 VGDLAADVTDYHLTEVFRTR---YNSVKGAKVVIDRLTSRTKGYGFVRF 215
+G+L DV D + ++F + NS++ +V+ D + KG +V F
Sbjct: 287 MGNLPFDVKDEEVYQLFTGKSNLENSIEAVRVIRDPHLNIGKGIAYVLF 335
>AT5G19030.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:6357572-6359026 REVERSE
Length = 126
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 33/55 (60%)
Query: 83 MDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQTYNGTI 137
+ E L + F+ G++ VK+I N+ T QS GYG++ F S+ A+ ++ NG +
Sbjct: 69 VSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMNGKV 123
>AT2G43370.1 | Symbols: | U1 small nuclear ribonucleoprotein 70
kDa, putative | chr2:18020508-18022453 FORWARD
Length = 333
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 148 NWATFSAGGERRHDDSPDYTIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRT 207
N + G+ + P T+FVG L+ T+ L EV ++Y +K ++V +T +
Sbjct: 46 NAGLYDPSGDSKAVGDPYCTLFVGRLSHHTTEDTLREVM-SKYGRIKNLRLVRHIVTGAS 104
Query: 208 KGYGFVRFADESEQVRAMTEMQGVVCSTRPM 238
+GYGFV + E E +RA + + R +
Sbjct: 105 RGYGFVEYETEKEMLRAYEDAHHSLIDGREI 135
>AT1G76460.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:28691826-28693400 REVERSE
Length = 285
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 168 IFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTE 227
+FVG LA + L + F +Y + A V+ D+ T R+KGYGFV F D RA +
Sbjct: 26 VFVGGLAWETQSETLRQHFE-QYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACAD 84
Query: 228 MQGVVCSTRPMRIGPAANKNLGTGTGTQPKASY 260
++ R AN NL + +P Y
Sbjct: 85 PTPIIDGRR-------ANCNLASLGRPRPPLPY 110
>AT1G71800.1 | Symbols: | cleavage stimulation factor, putative |
chr1:27003268-27005512 FORWARD
Length = 461
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 168 IFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTE 227
+FVG++ D T+ L E+ V ++V DR T + KGYGF + DE + A
Sbjct: 11 VFVGNIPYDATEEQLREIC-GEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRN 69
Query: 228 MQGVVCSTRPMRIGPAAN 245
+Q + R +R+ A N
Sbjct: 70 LQSYEINGRQLRVDFAEN 87
>AT5G47320.1 | Symbols: RPS19 | RPS19 (40S ribosomal protein S19);
RNA binding | chr5:19221028-19222178 FORWARD
Length = 212
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 168 IFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTE 227
+++G L+ ++ L + F + +N V A+V+ +++T R++GYGFV F E A++
Sbjct: 33 LYIGGLSPGTDEHSLKDAFSS-FNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91
Query: 228 MQG 230
M G
Sbjct: 92 MNG 94
>AT5G10350.1 | Symbols: | polyadenylate-binding protein family
protein / PABP family protein | chr5:3255675-3257747
REVERSE
Length = 217
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 70/150 (46%), Gaps = 13/150 (8%)
Query: 219 SEQVRAMTEMQGVVCSTRPMRIGPAANKNLGTGTGTQPKASYQNSQGPQNENDPNNTTIF 278
+E R + EM+ + R M+ K +G TQ AS +Q + E D +++
Sbjct: 40 AEMKRRLKEMEEEAAALREMQA--KVEKEMG---ATQDPASMAANQEGKEEVD--ARSVY 92
Query: 279 VGNLDPNVTDDHLRQVFGLYGDLVHV-----KIPQGKRCGFVQFADRSCAEEALRVLNGT 333
VGN+D T + ++ F G + V K Q K +V+F + +EAL+ LN +
Sbjct: 93 VGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQ-LNES 151
Query: 334 LLGGQNVRLSWGRSPSNKQTQSDPSQWNNS 363
L G+ +++S R+ Q P ++N S
Sbjct: 152 ELHGRQLKVSPKRTNVPGMKQYHPGRFNPS 181
>AT5G10350.2 | Symbols: | polyadenylate-binding protein family
protein / PABP family protein | chr5:3255809-3257747
REVERSE
Length = 202
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 70/150 (46%), Gaps = 13/150 (8%)
Query: 219 SEQVRAMTEMQGVVCSTRPMRIGPAANKNLGTGTGTQPKASYQNSQGPQNENDPNNTTIF 278
+E R + EM+ + R M+ K +G TQ AS +Q + E D +++
Sbjct: 40 AEMKRRLKEMEEEAAALREMQA--KVEKEMG---ATQDPASMAANQEGKEEVDAR--SVY 92
Query: 279 VGNLDPNVTDDHLRQVFGLYGDLVHV-----KIPQGKRCGFVQFADRSCAEEALRVLNGT 333
VGN+D T + ++ F G + V K Q K +V+F + +EAL+ LN +
Sbjct: 93 VGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQ-LNES 151
Query: 334 LLGGQNVRLSWGRSPSNKQTQSDPSQWNNS 363
L G+ +++S R+ Q P ++N S
Sbjct: 152 ELHGRQLKVSPKRTNVPGMKQYHPGRFNPS 181
>AT5G06000.1 | Symbols: ATEIF3G2, EIF3G2 | EIF3G2 (eukaryotic
translation initiation factor 3G2); RNA binding /
translation initiation factor | chr5:1808170-1809743
FORWARD
Length = 308
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 150 ATFSAGG---ERRHDDSPDYTIFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSR 206
A AGG RHD++ ++ V +L+ D L E+FR + +V V ID+ TS
Sbjct: 190 ADRKAGGSDMRSRHDEN---SVRVTNLSEDTRGPDLMELFRP-FGAVTRCHVAIDQKTSM 245
Query: 207 TKGYGFVRFADESEQVRAMTEMQG 230
++G+GFV F + RA+ ++ G
Sbjct: 246 SRGFGFVSFVSREDAQRAINKLNG 269
>AT1G20880.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:7262868-7264823 REVERSE
Length = 274
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 168 IFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTE 227
+FVG LA + L F +Y + A V+ D+ T R+KGYGFV F D RA +
Sbjct: 26 VFVGGLAWETQSETLRRHF-DQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVD 84
Query: 228 MQGVVCSTRPMRIGPAANKNLGTGTGTQPKASY 260
++ R AN NL + ++P Y
Sbjct: 85 PTPIIDGRR-------ANCNLASLGRSRPPMQY 110
>AT5G61960.2 | Symbols: AML1 | AML1 (ARABIDOPSIS MEI2-LIKE PROTEIN
1); RNA binding | chr5:24896227-24900709 REVERSE
Length = 915
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Query: 262 NSQGPQNENDPNNTTIFVGNLDPNVTDDHLRQVFGLYGDLVHVKIPQGKRCGF--VQFAD 319
NS G N + + T+ VGN+ NV D L+ +F +GD+ + R GF V + D
Sbjct: 204 NSVGELNRGEIPSRTLLVGNISSNVEDYELKVLFEQFGDIQALHTACKNR-GFIMVSYCD 262
Query: 320 RSCAEEALRVLNGTLLGGQNVRLSWGRS---PSNKQT 353
A+ A R L LL G + + + S PS K T
Sbjct: 263 IRAAQNAARALQNKLLRGTKLDIRYSISKENPSQKDT 299
>AT5G61960.1 | Symbols: AML1 | AML1 (ARABIDOPSIS MEI2-LIKE PROTEIN
1); RNA binding | chr5:24896227-24900709 REVERSE
Length = 915
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Query: 262 NSQGPQNENDPNNTTIFVGNLDPNVTDDHLRQVFGLYGDLVHVKIPQGKRCGF--VQFAD 319
NS G N + + T+ VGN+ NV D L+ +F +GD+ + R GF V + D
Sbjct: 204 NSVGELNRGEIPSRTLLVGNISSNVEDYELKVLFEQFGDIQALHTACKNR-GFIMVSYCD 262
Query: 320 RSCAEEALRVLNGTLLGGQNVRLSWGRS---PSNKQT 353
A+ A R L LL G + + + S PS K T
Sbjct: 263 IRAAQNAARALQNKLLRGTKLDIRYSISKENPSQKDT 299
>AT1G22330.1 | Symbols: | RNA binding | chr1:7886682-7889230
FORWARD
Length = 291
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 168 IFVGDLAADVTDYHLTEVFRTRYNSVKGAKVVIDRLTSRTKGYGFVRFADESEQVRAMTE 227
+FVG LA + + F ++ + A ++ D+ T ++KGYGFV F D RA+ +
Sbjct: 19 VFVGGLAWETPTDEMRRYFD-QFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVAD 77
Query: 228 MQGVV 232
V+
Sbjct: 78 PNPVI 82
>AT5G19030.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:6357505-6359083 REVERSE
Length = 172
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 83 MDENYLYQCFAHTGELATVKVIRNKNTNQSEGYGFLEFTSRAGAERILQTYNGTIM 138
+ E L + F+ G++ VK+I N+ T QS GYG++ F S+ A+ ++ NG
Sbjct: 88 VSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMNGKFF 143