Miyakogusa Predicted Gene

chr4.CM0617.290.nd
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr4.CM0617.290.nd - phase: 2 /partial
         (237 letters)

Database: TAIR8_pep 
           32,825 sequences; 13,166,001 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G48240.1 | Symbols:  | similar to unnamed protein product [Vi...    66   1e-11
AT5G48240.2 | Symbols:  | similar to unnamed protein product [Vi...    66   2e-11

>AT5G48240.1 | Symbols:  | similar to unnamed protein product [Vitis
           vinifera] (GB:CAO41129.1); contains InterPro domain
           Protein of unknown function DUF1665 (InterPro:IPR012459)
           | chr5:19576527-19578379 FORWARD
          Length = 309

 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/179 (35%), Positives = 90/179 (50%), Gaps = 30/179 (16%)

Query: 40  ADETQLMEPGRDPRKRKF-VKNQRHKNSKLRPKGKPAQHGQKKVKVNQEMKKLYHKRARE 98
            +E  +    R  RKR+  VK         + K KP+     + KV  + +KL+ KRAR+
Sbjct: 4   GEEGHMAMADRGSRKRRVGVKKGTKAARNKKQKSKPST--SDRFKVTMKNQKLFQKRARD 61

Query: 99  YNSDDDEEDETAV---PATTRPRRMTSIKYEKNEVDDIENEDLSDDEGAAGGEKVKNKNV 155
           YNSDDDEE++      P  T   ++ S        ++I  ED  +DE + G         
Sbjct: 62  YNSDDDEEEDDESKKQPEVTIREKIFSDANMGPNYEEIGEED--NDENSDG--------- 110

Query: 156 TFMKNHNYEGEEEDDGEILPGITKF-TEGCKAFKLAFMSIVKKSVSDDLLNPILSANKN 213
                       ED GEI  GITKF T+GC AFK+AF +I+KK+  DD L P+LSA+K+
Sbjct: 111 ------------EDHGEIESGITKFATDGCNAFKIAFKAIMKKTKGDDTLGPVLSAHKH 157


>AT5G48240.2 | Symbols:  | similar to unnamed protein product [Vitis
           vinifera] (GB:CAO41129.1); contains InterPro domain
           Protein of unknown function DUF1665 (InterPro:IPR012459)
           | chr5:19576527-19577845 FORWARD
          Length = 290

 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/179 (35%), Positives = 90/179 (50%), Gaps = 30/179 (16%)

Query: 40  ADETQLMEPGRDPRKRKF-VKNQRHKNSKLRPKGKPAQHGQKKVKVNQEMKKLYHKRARE 98
            +E  +    R  RKR+  VK         + K KP+     + KV  + +KL+ KRAR+
Sbjct: 4   GEEGHMAMADRGSRKRRVGVKKGTKAARNKKQKSKPST--SDRFKVTMKNQKLFQKRARD 61

Query: 99  YNSDDDEEDETAV---PATTRPRRMTSIKYEKNEVDDIENEDLSDDEGAAGGEKVKNKNV 155
           YNSDDDEE++      P  T   ++ S        ++I  ED  +DE + G         
Sbjct: 62  YNSDDDEEEDDESKKQPEVTIREKIFSDANMGPNYEEIGEED--NDENSDG--------- 110

Query: 156 TFMKNHNYEGEEEDDGEILPGITKF-TEGCKAFKLAFMSIVKKSVSDDLLNPILSANKN 213
                       ED GEI  GITKF T+GC AFK+AF +I+KK+  DD L P+LSA+K+
Sbjct: 111 ------------EDHGEIESGITKFATDGCNAFKIAFKAIMKKTKGDDTLGPVLSAHKH 157