Miyakogusa Predicted Gene
- chr4.CM0421.390.nc
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr4.CM0421.390.nc - phase: 0
(597 letters)
Database: TAIR8_pep
32,825 sequences; 13,166,001 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G11710.1 | Symbols: | lysyl-tRNA synthetase, putative / lysi... 902 0.0
AT3G13490.1 | Symbols: OVA5 | OVA5 (OVULE ABORTION 5); ATP bindi... 337 2e-92
AT4G26870.1 | Symbols: | aspartyl-tRNA synthetase, putative / a... 104 1e-22
AT4G31180.2 | Symbols: | aspartyl-tRNA synthetase, putative / a... 89 1e-17
AT4G31180.1 | Symbols: | aspartyl-tRNA synthetase, putative / a... 89 1e-17
AT4G33760.1 | Symbols: | tRNA synthetase class II (D, K and N) ... 72 9e-13
>AT3G11710.1 | Symbols: | lysyl-tRNA synthetase, putative /
lysine--tRNA ligase, putative | chr3:3702365-3705619
REVERSE
Length = 626
Score = 902 bits (2331), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/542 (77%), Positives = 472/542 (87%), Gaps = 6/542 (1%)
Query: 54 SNKPASADDDDMDPTQYHENRLKYLAAHKAEGNNPYPHKFAVSMSIEQYISKYEGLSDGE 113
S K +ADD++MD TQY+ENRLKYLAA KA+G NPYPHKFAVSMSI +YI Y L++G+
Sbjct: 74 SQKAVAADDEEMDATQYYENRLKYLAAEKAKGENPYPHKFAVSMSIPKYIETYGSLNNGD 133
Query: 114 HVEDVSVSLAGRIMHKRTSGAKLVFYDLHGGGLKVQVMADASKSDLGEVEFSKFHSNVKR 173
HVE+ SLAGRIM KR+S +KL FYDLHG KVQVMADASKS L E EF K HSN KR
Sbjct: 134 HVENAEESLAGRIMSKRSSSSKLFFYDLHGDDFKVQVMADASKSGLDEAEFLKLHSNAKR 193
Query: 174 GDIVGITGFPGKSKKGELSIFPKTFVVLSHCLHMMPRXXXXXXXXXXXXXXXXXWIPGST 233
GDIVG+ GFPGK+K+GELSIFP++F++LSHCLHMMPR W+PG T
Sbjct: 194 GDIVGVIGFPGKTKRGELSIFPRSFILLSHCLHMMPRKADNVNAKKPEI-----WVPGQT 248
Query: 234 RNPETYILKDQETRYRLRHLDLMLNPEVREIFKTRCKIISYIRRFLDDLDFLEVETPMMN 293
RNPE Y+LKDQE+RYR RHLD++LN EVR+IF+TR KIISY+RRFLD+ +FLEVETPMMN
Sbjct: 249 RNPEAYVLKDQESRYRQRHLDMILNVEVRQIFRTRAKIISYVRRFLDNKNFLEVETPMMN 308
Query: 294 MIAGGAAARPFVTHHNDLNMRLYMRIAPELYLKELVVGGLDRVYEIGKQFRNEGIDLTHN 353
MIAGGAAARPFVTHHNDL+MRLYMRIAPELYLK+L+VGGL+RVYEIGKQFRNEGIDLTHN
Sbjct: 309 MIAGGAAARPFVTHHNDLDMRLYMRIAPELYLKQLIVGGLERVYEIGKQFRNEGIDLTHN 368
Query: 354 PEFTTCEFYMAYMDYNDLMEITEQMLSGMVKELTKGSYKIKYHAEGIDKDPIEIDFTPPF 413
PEFTTCEFYMA+ DYNDLME+TE MLSGMVKELT G YKIKY+A G DKDPIEIDFTPPF
Sbjct: 369 PEFTTCEFYMAFADYNDLMEMTEVMLSGMVKELT-GGYKIKYNANGYDKDPIEIDFTPPF 427
Query: 414 RRIDMIEELEKMAGLSIPKDLSSEETNQYLKNACLKYDIKCPPPETTTRLLDKLVGHFLE 473
RRI+MI ELEK+A L+IPKDL+SEE N+YL +AC ++D+KCPPP+TT RLLDKLVG FLE
Sbjct: 428 RRIEMIGELEKVAKLNIPKDLASEEANKYLIDACARFDVKCPPPQTTARLLDKLVGEFLE 487
Query: 474 ETCVNPTFIINHPEIMSPLAKWHRSKPGLTERFELFVNKHELCNAYTELNDPVVQRQRFA 533
TCVNPTFIIN PEIMSPLAKWHRSK GLTERFELF+NKHELCNAYTELNDPVVQRQRFA
Sbjct: 488 PTCVNPTFIINQPEIMSPLAKWHRSKSGLTERFELFINKHELCNAYTELNDPVVQRQRFA 547
Query: 534 EQLKDRQSGDDEAMALDETFCTALEYGLPPTGGWGLGIDRLTMILTDSQNIKEVLLFPAM 593
+QLKDRQSGDDEAMALDETFC ALEYGL PTGGWGLGIDRL+M+LTDS NIKEVL FPAM
Sbjct: 548 DQLKDRQSGDDEAMALDETFCNALEYGLAPTGGWGLGIDRLSMLLTDSLNIKEVLFFPAM 607
Query: 594 KP 595
+P
Sbjct: 608 RP 609
>AT3G13490.1 | Symbols: OVA5 | OVA5 (OVULE ABORTION 5); ATP binding
/ aminoacyl-tRNA ligase | chr3:4395991-4399309 REVERSE
Length = 602
Score = 337 bits (863), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 206/553 (37%), Positives = 301/553 (54%), Gaps = 69/553 (12%)
Query: 74 RLKYLAAHKAEGNNPYPHKFAVSMSIEQYISKYEGLSDGEHVEDV--SVSLAGRIMHKRT 131
RLK + + +G PY +K+ S S Q Y+ L++GE ++ VS+AGR++ +R
Sbjct: 88 RLKKVEELRGQGLEPYAYKWEKSHSANQLQEIYKHLANGEESDNEIDCVSIAGRVVARRA 147
Query: 132 SGAKLVFYDLHGGGLKVQVMADASKSDLGEVEFSKFHSNVKRGDIVGITGFPGKSKKGEL 191
G KL F L +Q+ + K L + +F + + GDI+G +G +++KGEL
Sbjct: 148 FG-KLAFLTLRDDSGTIQLYCE--KERLSDDQFEQLKQFIDIGDILGASGSMKRTEKGEL 204
Query: 192 SIFPKTFVVLSHCLHMMPRXXXXXXXXXXXXXXXXXWIPGSTRNPETYILKDQETRYRLR 251
SI +F +L+ L +P + + L D + RYR R
Sbjct: 205 SICVNSFSILTKSLLPLP--------------------------DKYHGLTDIDKRYRQR 238
Query: 252 HLDLMLNPEVREIFKTRCKIISYIRRFLDDLDFLEVETPMMNMIAGGAAARPFVTHHNDL 311
++D++ NPEV ++F+ R KI+S IR+ ++ +LEVETP++ AGGA ARPFVT HN L
Sbjct: 239 YVDMIANPEVADVFRRRAKIVSEIRKTVESFGYLEVETPVLQGAAGGAEARPFVTFHNSL 298
Query: 312 NMRLYMRIAPELYLKELVVGGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAYMDYNDL 371
LY+RIA EL+LK ++VGG ++VYEIG+ FRNEGI HNPEFTT E Y AY DY+ +
Sbjct: 299 GRDLYLRIATELHLKRMLVGGFEKVYEIGRIFRNEGISTRHNPEFTTIEMYEAYSDYHSM 358
Query: 372 MEITEQMLSGMVKELTKGSYKIKYHAEGIDKDPIEIDFTPPFRRIDMIEELEKMAGLSIP 431
M++ E +++ G I Y EI P+RR M ++++ G++
Sbjct: 359 MDMAELIVT-QCSMAVNGKLTIDYQG-------TEICLERPWRRETMHNLVKEITGINF- 409
Query: 432 KDLSSEETNQYLKNACLKYDIKCPPPETTTRLLDKLVGHFLEET--------CVNPTFII 483
+L + N D+ P ++ R L GH L E V PTF++
Sbjct: 410 SELGEDLGNAKDTVLLALQDVLEPKDKSGIRACSSL-GHLLNEIFEVVVEPKLVQPTFVL 468
Query: 484 NHPEIMSPLAKWHRSKPGLTERFELFVNKHELCNAYTELNDPVVQRQRFAEQLKD----- 538
++P +SPLAK HR GLTERFELF+ E+ NA++EL DPV QR R EQ++
Sbjct: 469 DYPIEISPLAKPHRGNAGLTERFELFICGREMANAFSELTDPVDQRTRLEEQVRQHNAKR 528
Query: 539 -------------RQSGDDEA--MALDETFCTALEYGLPPTGGWGLGIDRLTMILTDSQN 583
+ DDE+ + LDE F TALEYG+PP G GLGIDRL M+LT+S +
Sbjct: 529 AEAVRESPEPNAKKDDDDDESYEVTLDEDFLTALEYGMPPASGMGLGIDRLVMLLTNSAS 588
Query: 584 IKEVLLFPAMKPQ 596
I++V+ FP +K Q
Sbjct: 589 IRDVIAFPVLKLQ 601
>AT4G26870.1 | Symbols: | aspartyl-tRNA synthetase, putative /
aspartate--tRNA ligase, putative |
chr4:13505387-13507625 FORWARD
Length = 532
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 114/485 (23%), Positives = 201/485 (41%), Gaps = 47/485 (9%)
Query: 113 EHVEDVSVSLAGRIMHKRTSGAKLVFYDLHGGGLKVQVMADASKSDLGEVEFSKFHSNVK 172
E + VS+ GR+ R G KL F L G VQ + + ++ ++F K S
Sbjct: 81 EEIVGSEVSIRGRLHKNRLVGTKL-FVILRESGFTVQCVVEETRVGANMIKFVKQLSRES 139
Query: 173 RGDIVGITGFPGKSKKG---ELSIFPKTFVVLSHCLHMMPRXXXXXXXXXXXXXXXXXWI 229
+++G+ P K G ++ I + LS L +P I
Sbjct: 140 VVELIGVVSHPKKPLTGTTQQVEIHVRKMYCLSRSLPNLP-------LVVEDAARSESDI 192
Query: 230 PGSTRNPETYILKDQETRYRLRHLDLMLNPEVREIFKTRCKIISYIRRFLDDLDFLEVET 289
S ++ + Q+TR R LD+ P + IF+ +C++ R +L FLE+ T
Sbjct: 193 EKSGKDGKQAARVLQDTRLNNRVLDIR-TPANQAIFRIQCQVQIAFREYLQSKGFLEIHT 251
Query: 290 PMMNMIAGGAAARPFVTHHNDLNMRLYMRIAPELYLKELVVGGLDRVYEIGKQFRNE-GI 348
P +IAG + V + + +P+L+ + + G + RV+E+G FR E
Sbjct: 252 P--KLIAGSSEGGSAVFRLDYKGQPACLAQSPQLHKQMAICGDMRRVFEVGPVFRAEDSF 309
Query: 349 DLTHNPEFTTCEFYMAY-MDYNDLMEITEQMLSGMVKELTKGSYKIKYHAEGIDKDPIEI 407
H EF + M M Y+++M++ ++ + TK + E + K
Sbjct: 310 THRHLCEFVGLDVEMEIRMHYSEIMDLVGELFPFI---FTKIEERCPKELESVRKQY--- 363
Query: 408 DFTPPFRRIDMIEELEKMAGLSIPKDLSSEETNQYLKNACLKYDIKCPPPETTTRLLDKL 467
PF+ + + + + L+ E Q LK A + D P + T KL
Sbjct: 364 ----PFQSLKFLPQTLR---------LTFAEGIQMLKEAGEEVD---PLGDLNTESERKL 407
Query: 468 VGHFLEETCVNPTFIINHPEIMSPLAKW-HRSKPGLTERFELFVNKHELCNAYTELNDPV 526
LE+ + +P + P + + + F++F+ E+ + ++DP
Sbjct: 408 GQLVLEKYKTEFYMLHRYPSAVRPFYTMPYENDSNYSNSFDVFIRGEEIMSGAQRIHDPE 467
Query: 527 VQRQRFAEQLKDRQSGDDEAMALDETFCTALEYGLPPTGGWGLGIDRLTMILTDSQNIKE 586
+ +R R+ G D + T+ A YG PP GG+G+G++R+ M+L NI++
Sbjct: 468 LLEKR------ARECGID--VKTISTYIDAFRYGAPPHGGFGVGLERVVMLLCALNNIRK 519
Query: 587 VLLFP 591
LFP
Sbjct: 520 TSLFP 524
>AT4G31180.2 | Symbols: | aspartyl-tRNA synthetase, putative /
aspartate--tRNA ligase, putative |
chr4:15156702-15159368 FORWARD
Length = 558
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 117/492 (23%), Positives = 203/492 (41%), Gaps = 57/492 (11%)
Query: 113 EHVEDVSVSLAGRIMHKRTSGAKLVFYDLHGGGLKVQ-VMADASKSDLGE--VEFSKFHS 169
E + + V + GR+ R + KL F L G VQ V++ + K+ +G V++ K S
Sbjct: 103 EEMLESEVLIRGRVHTNRPTSNKLGFVVLRESGSTVQCVVSQSEKTKVGANMVKYLKQLS 162
Query: 170 NVKRGDIVGITGFPGKSKKG---ELSIFPKTFVVLSHCLHMMPRXXXXXXXXXXXXXXXX 226
D++G+ P + G ++ I + ++ L +P
Sbjct: 163 RESFVDVIGVVTLPKEPLTGTTQQVEIQVRKVYCINKSLAKLPLSVEDAARSEAD----- 217
Query: 227 XWIPGSTRNPETYILKDQETRYRLRHLDLMLNPEVREIFKTRCKIISYIRRFLDDLDFLE 286
I S + P +Q+TR R LDL P + IF+ + ++ R L +F+
Sbjct: 218 --IEASLQTPSPAARVNQDTRLNYRVLDLR-TPANQAIFQLQYEVEYAFREKLRFKNFVG 274
Query: 287 VETPMMNMIAGGAAARPFVTHHNDLNMRLYMRIAPELYLKELVVGGLDRVYEIGKQFRNE 346
+ TP ++AG + V + +P+L+ + + G L RV+E+G FR E
Sbjct: 275 IHTP--KLMAGSSEGGSAVFRLEYKGQPACLAQSPQLHKQMAICGDLRRVFEVGPVFRAE 332
Query: 347 -GIDLTHNPEFTTCEFYMAYMD-YNDLMEITEQMLSGMVKELTKGSYKIKYHAEGIDKD- 403
H EF + M Y+++M++ +++ + L + + K + + K
Sbjct: 333 DSFTHRHLCEFVGLDVEMEIRKHYSEIMDLVDELFVFIFTSLNE---RCKKELQAVGKQY 389
Query: 404 PIE-IDFTPPFRRIDMIEELEKMAGLSIPKDLSSEETNQYLKNACLKYDIKCPPPETTTR 462
P E + F P R L+ EE Q LK A ++ D P + T
Sbjct: 390 PFEPLKFLPKTLR------------------LTFEEGVQMLKEAGVEVD---PLGDLNTE 428
Query: 463 LLDKLVGHFLEETCVNPTFIINH--PEIMSPLAKWHRS-KPGLTERFELFVNKHELCNAY 519
KL LE+ N F I H P+ + P + P + F++F+ E+ +
Sbjct: 429 SERKLGQLVLEK--YNTEFYILHRYPKAVRPFYTMTCADNPLYSNSFDVFIRGEEIISGA 486
Query: 520 TELNDPVVQRQRFAEQLKDRQSGDDEAMALDETFCTALEYGLPPTGGWGLGIDRLTMILT 579
++ P V QR E G D + T+ + YG P GG+G+G++R+ M+
Sbjct: 487 QRVHIPEVLEQRAGE------CGID--VKTISTYIDSFRYGAPLHGGFGVGLERVVMLFC 538
Query: 580 DSQNIKEVLLFP 591
NI++ LFP
Sbjct: 539 ALNNIRKTSLFP 550
>AT4G31180.1 | Symbols: | aspartyl-tRNA synthetase, putative /
aspartate--tRNA ligase, putative |
chr4:15156702-15159368 FORWARD
Length = 558
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 117/492 (23%), Positives = 203/492 (41%), Gaps = 57/492 (11%)
Query: 113 EHVEDVSVSLAGRIMHKRTSGAKLVFYDLHGGGLKVQ-VMADASKSDLGE--VEFSKFHS 169
E + + V + GR+ R + KL F L G VQ V++ + K+ +G V++ K S
Sbjct: 103 EEMLESEVLIRGRVHTNRPTSNKLGFVVLRESGSTVQCVVSQSEKTKVGANMVKYLKQLS 162
Query: 170 NVKRGDIVGITGFPGKSKKG---ELSIFPKTFVVLSHCLHMMPRXXXXXXXXXXXXXXXX 226
D++G+ P + G ++ I + ++ L +P
Sbjct: 163 RESFVDVIGVVTLPKEPLTGTTQQVEIQVRKVYCINKSLAKLPLSVEDAARSEAD----- 217
Query: 227 XWIPGSTRNPETYILKDQETRYRLRHLDLMLNPEVREIFKTRCKIISYIRRFLDDLDFLE 286
I S + P +Q+TR R LDL P + IF+ + ++ R L +F+
Sbjct: 218 --IEASLQTPSPAARVNQDTRLNYRVLDLR-TPANQAIFQLQYEVEYAFREKLRFKNFVG 274
Query: 287 VETPMMNMIAGGAAARPFVTHHNDLNMRLYMRIAPELYLKELVVGGLDRVYEIGKQFRNE 346
+ TP ++AG + V + +P+L+ + + G L RV+E+G FR E
Sbjct: 275 IHTP--KLMAGSSEGGSAVFRLEYKGQPACLAQSPQLHKQMAICGDLRRVFEVGPVFRAE 332
Query: 347 -GIDLTHNPEFTTCEFYMAYMD-YNDLMEITEQMLSGMVKELTKGSYKIKYHAEGIDKD- 403
H EF + M Y+++M++ +++ + L + + K + + K
Sbjct: 333 DSFTHRHLCEFVGLDVEMEIRKHYSEIMDLVDELFVFIFTSLNE---RCKKELQAVGKQY 389
Query: 404 PIE-IDFTPPFRRIDMIEELEKMAGLSIPKDLSSEETNQYLKNACLKYDIKCPPPETTTR 462
P E + F P R L+ EE Q LK A ++ D P + T
Sbjct: 390 PFEPLKFLPKTLR------------------LTFEEGVQMLKEAGVEVD---PLGDLNTE 428
Query: 463 LLDKLVGHFLEETCVNPTFIINH--PEIMSPLAKWHRS-KPGLTERFELFVNKHELCNAY 519
KL LE+ N F I H P+ + P + P + F++F+ E+ +
Sbjct: 429 SERKLGQLVLEK--YNTEFYILHRYPKAVRPFYTMTCADNPLYSNSFDVFIRGEEIISGA 486
Query: 520 TELNDPVVQRQRFAEQLKDRQSGDDEAMALDETFCTALEYGLPPTGGWGLGIDRLTMILT 579
++ P V QR E G D + T+ + YG P GG+G+G++R+ M+
Sbjct: 487 QRVHIPEVLEQRAGE------CGID--VKTISTYIDSFRYGAPLHGGFGVGLERVVMLFC 538
Query: 580 DSQNIKEVLLFP 591
NI++ LFP
Sbjct: 539 ALNNIRKTSLFP 550
>AT4G33760.1 | Symbols: | tRNA synthetase class II (D, K and N)
family protein | chr4:16189287-16193262 REVERSE
Length = 664
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 76/147 (51%), Gaps = 2/147 (1%)
Query: 241 LKDQETRYRLRHLDLMLNPEVREIFKTRCKIISYIRRFLDDL-DFLEVETPMMNMIAGGA 299
L +E R R R LDL +++ R ++ IRR+L+D F+E+ETP+++
Sbjct: 196 LIKEEIRLRFRCLDLR-RQQMKNNIVLRHNVVKLIRRYLEDRHGFIEIETPILSRSTPEG 254
Query: 300 AARPFVTHHNDLNMRLYMRIAPELYLKELVVGGLDRVYEIGKQFRNEGIDLTHNPEFTTC 359
A V + +P+L+ + L+V G D+ Y+I + FR+E + PEFT
Sbjct: 255 ARDYLVPSRIQSGTFYALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQL 314
Query: 360 EFYMAYMDYNDLMEITEQMLSGMVKEL 386
+ MA+M D++++ E ++ + E+
Sbjct: 315 DMEMAFMPMEDMLKLNEDLIRKVFSEI 341