Miyakogusa Predicted Gene

chr4.CM0244.330.nc
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr4.CM0244.330.nc + phase: 0 
         (403 letters)

Database: TAIR8_pep 
           32,825 sequences; 13,166,001 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G57120.1 | Symbols:  | similar to unnamed protein product [Vi...   103   2e-22

>AT5G57120.1 | Symbols:  | similar to unnamed protein product [Vitis
           vinifera] (GB:CAO69558.1); contains InterPro domain
           SRP40, C-terminal (InterPro:IPR007718); contains
           InterPro domain LisH dimerisation motif
           (InterPro:IPR006594) | chr5:23139993-23141626 REVERSE
          Length = 330

 Score =  103 bits (257), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/135 (45%), Positives = 80/135 (59%), Gaps = 5/135 (3%)

Query: 271 KRRKIENL--NEGKLQKTSNEQANKEANGYLENATEKSGQRSQKKQPKGSSEPKPAFQRV 328
           +R+K EN+  N+  +Q+T  ++   + NG  E +  KS  +   K    S EPK  FQRV
Sbjct: 198 RRKKEENVVENDEGVQETPVKETETKENGNAEKSETKSTNQKSGKGLSNSKEPKKPFQRV 257

Query: 329 QVDKIEFHDERLQDNSYWAKDGAENGYGAKAQEILGQVRGRDFRHEXXXXXXXXXXXXPI 388
            VD+I + +     NSY++K GAE GYG KAQE+LGQVRGRDFRHE             I
Sbjct: 258 NVDEIVYTE---NSNSYYSKGGAEIGYGLKAQEVLGQVRGRDFRHEKTKKKRGSYRGGLI 314

Query: 389 DLQSHSIKFNYSDDE 403
           D +SHS KFN SDDE
Sbjct: 315 DQESHSTKFNNSDDE 329



 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 36/57 (63%)

Query: 23 QSIARYFDRRGLSKSLKKFRSEAKIEKDNVDESSVDLEELFLKYLETCSQDVKSNVN 79
          +S+A+Y +R G SK  KK  SEA+IEK  ++ S  DLEE+F ++L     +  +N N
Sbjct: 20 RSVAQYLERCGFSKCFKKLLSEAEIEKKELNTSLPDLEEIFSEFLNKRDHEAAANGN 76