Miyakogusa Predicted Gene

chr4.CM0234.40.nc
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr4.CM0234.40.nc + phase: 0 
         (307 letters)

Database: TAIR8_pep 
           32,825 sequences; 13,166,001 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G15340.1 | Symbols: MBD10 | MBD10 (methyl-CpG-binding domain ...   149   2e-36
AT3G15790.1 | Symbols: MBD11 | MBD11 (methyl-CpG-binding domain ...   139   2e-33

>AT1G15340.1 | Symbols: MBD10 | MBD10 (methyl-CpG-binding domain
           10); DNA binding | chr1:5275890-5277469 REVERSE
          Length = 384

 Score =  149 bits (376), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 63/88 (71%), Positives = 77/88 (87%), Gaps = 1/88 (1%)

Query: 25  SLELPAPSGWQKKFFPKKSGTPKKNEIVFTAPTGEEITSKKQLEQYLKAHPGGPAASEFD 84
           S+ELPAP+ W+K F+PK++GTP+K EIVF APTGEEI+S+KQLEQYLKAHPG P  SEF+
Sbjct: 9   SIELPAPASWKKLFYPKRAGTPRKTEIVFVAPTGEEISSRKQLEQYLKAHPGNPVISEFE 68

Query: 85  WGTGETPRRSARISEKVK-VTPTPESDP 111
           W TGETPRRS+RIS+KVK  TPTP+ +P
Sbjct: 69  WTTGETPRRSSRISQKVKATTPTPDKEP 96


>AT3G15790.1 | Symbols: MBD11 | MBD11 (methyl-CpG-binding domain
           11); DNA binding | chr3:5343216-5344393 FORWARD
          Length = 254

 Score =  139 bits (351), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 60/88 (68%), Positives = 73/88 (82%)

Query: 25  SLELPAPSGWQKKFFPKKSGTPKKNEIVFTAPTGEEITSKKQLEQYLKAHPGGPAASEFD 84
           S+ELPAPS W+K F+P K G+ KK E+VF APTGEEI+++KQLEQYLK+HPG PA +EFD
Sbjct: 9   SVELPAPSSWKKLFYPNKVGSVKKTEVVFVAPTGEEISNRKQLEQYLKSHPGNPAIAEFD 68

Query: 85  WGTGETPRRSARISEKVKVTPTPESDPP 112
           W T  TPRRSARISEK K TP+P+ +PP
Sbjct: 69  WTTSGTPRRSARISEKTKATPSPDKEPP 96