Miyakogusa Predicted Gene

chr4.CM0229.400.nc
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr4.CM0229.400.nc + phase: 0 
         (289 letters)

Database: TAIR8_pep 
           32,825 sequences; 13,166,001 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G32080.2 | Symbols: PUR ALPHA-1 | PUR ALPHA-1 (purin-rich alp...   468   e-132
AT2G32080.1 | Symbols: PUR ALPHA-1 | PUR ALPHA-1 (purin-rich alp...   463   e-131

>AT2G32080.2 | Symbols: PUR ALPHA-1 | PUR ALPHA-1 (purin-rich alpha
           1); nucleic acid binding | chr2:13649793-13651113
           REVERSE
          Length = 295

 Score =  468 bits (1205), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 229/271 (84%), Positives = 247/271 (91%), Gaps = 3/271 (1%)

Query: 19  DVELLCKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPFSGISWFLDLFNYYV 78
           DVEL+ KTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVP SGISWFLDLFNYYV
Sbjct: 28  DVELVSKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPSSGISWFLDLFNYYV 87

Query: 79  NSDDQDLFSKELQLDTKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSRDEGWAA 138
           NS++ +LFSKELQLD+KVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSS DEGWAA
Sbjct: 88  NSEEHELFSKELQLDSKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSPDEGWAA 147

Query: 139 FRNILAEINEASRLFIMPNQQNSESSERLVGLSDDVGAGFISGHSTQPATSSELNVDRSV 198
           FRNILAEI+EAS LF+MPNQ+ S+  E LV   DDVGAGFI GH +Q  +SSE NVDR++
Sbjct: 148 FRNILAEIHEASGLFVMPNQKPSDGQEHLV---DDVGAGFIPGHGSQQPSSSEHNVDRTI 204

Query: 199 DLPAQDEIGNLGVSKVIRADQKRFFFDLGSNNRGHFLRISEVAGSDRSSIILPLSGLKQF 258
           D P Q+E G  GVSKVIRADQKRFFFDLG+NNRGHFLRISEVAGSDRSSIILPLSGLKQF
Sbjct: 205 DSPGQEETGMTGVSKVIRADQKRFFFDLGNNNRGHFLRISEVAGSDRSSIILPLSGLKQF 264

Query: 259 HEIVGHFVEITKDRIEGMAVANVRTVDPPQR 289
           HE++GHFVEITKD+IEGM  ANVRTVDPPQR
Sbjct: 265 HEVIGHFVEITKDKIEGMTGANVRTVDPPQR 295


>AT2G32080.1 | Symbols: PUR ALPHA-1 | PUR ALPHA-1 (purin-rich alpha
           1); nucleic acid binding | chr2:13649793-13651113
           REVERSE
          Length = 296

 Score =  463 bits (1192), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 229/272 (84%), Positives = 247/272 (90%), Gaps = 4/272 (1%)

Query: 19  DVELLCKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPFSGISWFLDLFNYYV 78
           DVEL+ KTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVP SGISWFLDLFNYYV
Sbjct: 28  DVELVSKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPSSGISWFLDLFNYYV 87

Query: 79  NSDDQDLFSKELQLDTKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSRDEGWAA 138
           NS++ +LFSKELQLD+KVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSS DEGWAA
Sbjct: 88  NSEEHELFSKELQLDSKVFYFDIGENRRGRFLKVSEASVSRNRSTIIVPAGSSPDEGWAA 147

Query: 139 FRNILAEINEASRLFIMPNQ-QNSESSERLVGLSDDVGAGFISGHSTQPATSSELNVDRS 197
           FRNILAEI+EAS LF+MPNQ + S+  E LV   DDVGAGFI GH +Q  +SSE NVDR+
Sbjct: 148 FRNILAEIHEASGLFVMPNQVKPSDGQEHLV---DDVGAGFIPGHGSQQPSSSEHNVDRT 204

Query: 198 VDLPAQDEIGNLGVSKVIRADQKRFFFDLGSNNRGHFLRISEVAGSDRSSIILPLSGLKQ 257
           +D P Q+E G  GVSKVIRADQKRFFFDLG+NNRGHFLRISEVAGSDRSSIILPLSGLKQ
Sbjct: 205 IDSPGQEETGMTGVSKVIRADQKRFFFDLGNNNRGHFLRISEVAGSDRSSIILPLSGLKQ 264

Query: 258 FHEIVGHFVEITKDRIEGMAVANVRTVDPPQR 289
           FHE++GHFVEITKD+IEGM  ANVRTVDPPQR
Sbjct: 265 FHEVIGHFVEITKDKIEGMTGANVRTVDPPQR 296