Miyakogusa Predicted Gene
- chr4.CM0172.160.nc
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr4.CM0172.160.nc - phase: 0
(585 letters)
Database: TAIR8_pep
32,825 sequences; 13,166,001 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G63120.2 | Symbols: | ethylene-responsive DEAD box RNA helic... 699 0.0
AT1G55150.1 | Symbols: | DEAD box RNA helicase, putative (RH20)... 671 0.0
AT5G63120.1 | Symbols: | ethylene-responsive DEAD box RNA helic... 618 e-177
AT3G01540.4 | Symbols: ATDRH1, DRH1 | DRH1 (DEAD box RNA helicas... 416 e-116
AT3G01540.3 | Symbols: ATDRH1, DRH1 | DRH1 (DEAD box RNA helicas... 416 e-116
AT3G01540.2 | Symbols: ATDRH1, DRH1 | DRH1 (DEAD box RNA helicas... 416 e-116
AT3G01540.1 | Symbols: ATDRH1, DRH1 | DRH1 (DEAD box RNA helicas... 416 e-116
AT3G06480.1 | Symbols: | DEAD box RNA helicase, putative | chr3... 412 e-115
AT5G14610.1 | Symbols: | ATP binding / ATP-dependent helicase |... 392 e-109
AT1G20920.2 | Symbols: | DEAD box RNA helicase, putative | chr1... 382 e-106
AT1G20920.1 | Symbols: | DEAD box RNA helicase, putative | chr1... 382 e-106
AT2G47330.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 362 e-100
AT3G09620.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 338 5e-93
AT1G31970.1 | Symbols: STRS1 | STRS1 (STRESS RESPONSE SUPPRESSOR... 330 1e-90
AT2G42520.1 | Symbols: | DEAD box RNA helicase, putative | chr2... 320 1e-87
AT3G58570.1 | Symbols: | DEAD box RNA helicase, putative | chr3... 320 2e-87
AT3G58510.3 | Symbols: | DEAD box RNA helicase, putative (RH11)... 306 2e-83
AT3G58510.2 | Symbols: | DEAD box RNA helicase, putative (RH11)... 306 2e-83
AT3G58510.1 | Symbols: | DEAD box RNA helicase, putative (RH11)... 306 2e-83
AT2G33730.1 | Symbols: | DEAD box RNA helicase, putative | chr2... 289 3e-78
AT5G51280.1 | Symbols: | DEAD-box protein abstrakt, putative | ... 268 8e-72
AT4G33370.1 | Symbols: | DEAD-box protein abstrakt, putative | ... 263 2e-70
AT3G22310.1 | Symbols: PMH1 | PMH1 (PUTATIVE MITOCHONDRIAL RNA H... 216 2e-56
AT3G22330.1 | Symbols: PMH2 | PMH2 (PUTATIVE MITOCHONDRIAL RNA H... 214 8e-56
AT3G02065.3 | Symbols: | DEAD/DEAH box helicase family protein ... 213 2e-55
AT3G02065.2 | Symbols: | DEAD/DEAH box helicase family protein ... 213 2e-55
AT5G26742.2 | Symbols: EMB1138 | EMB1138 (EMBRYO DEFECTIVE 1138)... 209 3e-54
AT5G26742.1 | Symbols: EMB1138 | EMB1138 (EMBRYO DEFECTIVE 1138)... 209 3e-54
AT3G09720.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 203 2e-52
AT3G19760.1 | Symbols: | eukaryotic translation initiation fact... 203 3e-52
AT5G60990.1 | Symbols: | DEAD/DEAH box helicase, putative (RH10... 195 5e-50
AT5G62190.1 | Symbols: PRH75 | PRH75 (plant RNA helicase 75); AT... 195 7e-50
AT1G51380.1 | Symbols: | eukaryotic translation initiation fact... 194 1e-49
AT1G16280.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 193 2e-49
AT1G77050.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 189 3e-48
AT3G02065.1 | Symbols: | DEAD/DEAH box helicase family protein ... 182 4e-46
AT4G00660.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 177 1e-44
AT4G00660.2 | Symbols: | DEAD/DEAH box helicase, putative | chr... 177 1e-44
AT4G16630.1 | Symbols: | DEAD/DEAH box helicase, putative (RH28... 177 1e-44
AT3G13920.2 | Symbols: RH4, TIF4A1, EIF4A1 | EIF4A1 (eukaryotic ... 177 2e-44
AT3G13920.1 | Symbols: RH4, TIF4A1, EIF4A1 | EIF4A1 (eukaryotic ... 177 2e-44
AT3G13920.3 | Symbols: RH4, TIF4A1, EIF4A1 | EIF4A1 (eukaryotic ... 177 2e-44
AT5G65900.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 176 4e-44
AT1G54270.1 | Symbols: EIF4A-2 | EIF4A-2 (eukaryotic translation... 174 1e-43
AT3G61240.2 | Symbols: | DEAD/DEAH box helicase, putative (RH12... 172 5e-43
AT3G61240.1 | Symbols: | DEAD/DEAH box helicase, putative (RH12... 172 5e-43
AT1G72730.1 | Symbols: | eukaryotic translation initiation fact... 171 1e-42
AT2G45810.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 171 2e-42
AT1G71370.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 167 1e-41
AT3G18600.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 166 3e-41
AT5G11170.1 | Symbols: | DEAD/DEAH box helicase, putative (RH15... 162 7e-40
AT5G11200.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 162 7e-40
AT5G08620.1 | Symbols: STRS2 | STRS2 (STRESS RESPONSE SUPPRESSOR... 156 3e-38
AT5G63630.1 | Symbols: | DEAD box RNA helicase, putative | chr5... 156 3e-38
AT5G08610.1 | Symbols: | DEAD box RNA helicase (RH26) | chr5:27... 155 5e-38
AT5G54910.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 155 6e-38
AT5G05450.1 | Symbols: | DEAD/DEAH box helicase, putative (RH18... 151 1e-36
AT2G40700.1 | Symbols: | DEAD/DEAH box helicase, putative (RH17... 150 2e-36
AT1G63250.1 | Symbols: | DEAD box RNA helicase, putative | chr1... 148 9e-36
AT2G07750.1 | Symbols: | DEAD box RNA helicase, putative | chr2... 147 1e-35
AT4G09730.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 147 2e-35
AT5G11170.2 | Symbols: | DEAD/DEAH box helicase, putative (RH15... 143 3e-34
AT3G53110.1 | Symbols: LOS4 | LOS4 (Low expression of osmoticall... 140 3e-33
AT1G71280.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 136 3e-32
AT1G12770.1 | Symbols: EMB1586 | EMB1586 (EMBRYO DEFECTIVE 1586)... 134 1e-31
AT5G19210.2 | Symbols: | DEAD/DEAH box helicase, putative | chr... 130 2e-30
AT3G16840.1 | Symbols: | ATP-dependent helicase | chr3:5738026-... 129 4e-30
AT4G34910.1 | Symbols: | DEAD/DEAH box helicase, putative (RH16... 110 4e-24
AT3G06980.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 102 9e-22
AT4G15850.1 | Symbols: ATRH1 | ATRH1 (Arabidopsis thaliana RNA h... 92 8e-19
AT2G28600.1 | Symbols: | ATP binding / ATP-dependent helicase/ ... 78 2e-14
AT1G10930.1 | Symbols: ATSGS1, RECQL4A, ATRECQ4A | ATRECQ4A/ATSG... 67 3e-11
AT5G19210.1 | Symbols: | DEAD/DEAH box helicase, putative | chr... 67 4e-11
AT4G35740.1 | Symbols: RecQl3 | RecQl3 (Recq-like 3); ATP bindin... 62 7e-10
AT1G59990.1 | Symbols: | DEAD/DEAH box helicase, putative (RH22... 61 2e-09
AT1G31360.1 | Symbols: RECQL2 | RECQL2 (Arabidopsis RecQ helicas... 60 4e-09
AT1G27880.1 | Symbols: | ATP-dependent DNA helicase, putative |... 54 3e-07
AT1G60930.1 | Symbols: RECQL4B, ATRECQ4B | ATRECQ4B/RECQL4B (ARA... 50 5e-06
AT4G35740.2 | Symbols: RecQl3 | RecQl3 (Recq-like 3); ATP bindin... 48 2e-05
AT3G05740.1 | Symbols: RECQI1 | RECQI1 (Arabidopsis RecQ helicas... 44 4e-04
AT1G31360.2 | Symbols: RECQL2 | RECQL2 (Arabidopsis RecQ helicas... 43 7e-04
>AT5G63120.2 | Symbols: | ethylene-responsive DEAD box RNA
helicase, putative (RH30) | chr5:25336193-25339297
REVERSE
Length = 591
Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/438 (76%), Positives = 380/438 (86%)
Query: 103 KDDLNNISLPKQDFRNLVPFEKNFYIESPAVRAMSEQEVMQYRASRDITVQGQDVPRPIR 162
K +L+++SLPKQ+F NLV FEKNFY+ESP V+AM+EQ+V YR RDI+V+G+DVP+P++
Sbjct: 106 KRELDSVSLPKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMK 165
Query: 163 SFHEASFPGYCLEVFARLGFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLAYLLPALV 222
F +A+FP LE A+LGF EPTPIQAQGWPMAL GRDLIGIAETGSGKTLAYLLPALV
Sbjct: 166 MFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALV 225
Query: 223 HVNAQPRLVQGDGPIVLVLAPTRELAVQIQQEAMKFGSRANIRITCIYGGAPKGPQIRDL 282
HV+AQPRL Q DGPIVL+LAPTRELAVQIQ+E+ KFG R+ +R TCIYGGAPKGPQIRDL
Sbjct: 226 HVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDL 285
Query: 283 QRGVEIVIATPGRLIDMLEAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 342
+RGVEIVIATPGRLIDMLE QHTNL+RVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ
Sbjct: 286 RRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 345
Query: 343 TLYWSATWPREVETLARQFLRNAYKVIIGSPDLKANHCINQVVEVVTDIEKYNRLIKLLK 402
TL WSATWPREVETLARQFLR+ YK IIGS DLKAN INQV+E+V EKYNRL+ LLK
Sbjct: 346 TLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLK 405
Query: 403 EVMDGGRILIFMETKKGCDQVTRQLRMEGWPALSIHGDKNQAERDWVLAEFKSGRSPIMT 462
++MDG +ILIF+ETK+GCDQVTRQLRM+GWPAL+IHGDK Q+ERD VLAEFKSGRSPIMT
Sbjct: 406 QLMDGSKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMT 465
Query: 463 ATDVAARGLDVKDIKFVINYDFPSSLEDYVHXXXXXXXXXXXXXXXXFFTHANAKYAREL 522
ATDVAARGLDVKDIK V+NYDFP++LEDY+H FFTH NAK+AREL
Sbjct: 466 ATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKFAREL 525
Query: 523 IKILQDAGQVVSPALSVM 540
+KILQ+AGQVV P LS +
Sbjct: 526 VKILQEAGQVVPPTLSAL 543
>AT1G55150.1 | Symbols: | DEAD box RNA helicase, putative (RH20) |
chr1:20578301-20580808 FORWARD
Length = 501
Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/439 (71%), Positives = 370/439 (84%)
Query: 103 KDDLNNISLPKQDFRNLVPFEKNFYIESPAVRAMSEQEVMQYRASRDITVQGQDVPRPIR 162
KD+ N S K D L PFEKNFY+ESPAV AM++ EV +YR R+ITV+G+D+P+P++
Sbjct: 40 KDNDGNESPRKLDLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVK 99
Query: 163 SFHEASFPGYCLEVFARLGFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLAYLLPALV 222
SF + FP Y LE + GF EPTPIQ+QGWPMA+ GRDLIGIAETGSGKTL+YLLPA+V
Sbjct: 100 SFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIV 159
Query: 223 HVNAQPRLVQGDGPIVLVLAPTRELAVQIQQEAMKFGSRANIRITCIYGGAPKGPQIRDL 282
HVNAQP L GDGPIVLVLAPTRELAVQIQQEA KFGS + I+ TCIYGG PKGPQ+RDL
Sbjct: 160 HVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDL 219
Query: 283 QRGVEIVIATPGRLIDMLEAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 342
Q+GVEIVIATPGRLIDM+E+ +TNL+RVTYLVLDEADRMLDMGF+PQIRKIVS IRPDRQ
Sbjct: 220 QKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQ 279
Query: 343 TLYWSATWPREVETLARQFLRNAYKVIIGSPDLKANHCINQVVEVVTDIEKYNRLIKLLK 402
TLYWSATWP+EVE L+++FL N YKVIIGS DLKAN I Q+V+V+++ +KYN+L+KLL+
Sbjct: 280 TLYWSATWPKEVEQLSKKFLYNPYKVIIGSSDLKANRAIRQIVDVISESQKYNKLVKLLE 339
Query: 403 EVMDGGRILIFMETKKGCDQVTRQLRMEGWPALSIHGDKNQAERDWVLAEFKSGRSPIMT 462
++MDG RIL+F++TKKGCDQ+TRQLRM+GWPALSIHGDK+QAERDWVL+EF+SG+SPIMT
Sbjct: 340 DIMDGSRILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMT 399
Query: 463 ATDVAARGLDVKDIKFVINYDFPSSLEDYVHXXXXXXXXXXXXXXXXFFTHANAKYAREL 522
ATDVAARGLDVKD+K+VINYDFP SLEDYVH FFT ANA++A+EL
Sbjct: 400 ATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANARFAKEL 459
Query: 523 IKILQDAGQVVSPALSVMA 541
ILQ+AGQ VSP L+ M
Sbjct: 460 TNILQEAGQKVSPELASMG 478
>AT5G63120.1 | Symbols: | ethylene-responsive DEAD box RNA
helicase, putative (RH30) | chr5:25337024-25339297
REVERSE
Length = 484
Score = 618 bits (1594), Expect = e-177, Method: Compositional matrix adjust.
Identities = 295/375 (78%), Positives = 334/375 (89%)
Query: 103 KDDLNNISLPKQDFRNLVPFEKNFYIESPAVRAMSEQEVMQYRASRDITVQGQDVPRPIR 162
K +L+++SLPKQ+F NLV FEKNFY+ESP V+AM+EQ+V YR RDI+V+G+DVP+P++
Sbjct: 106 KRELDSVSLPKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMK 165
Query: 163 SFHEASFPGYCLEVFARLGFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLAYLLPALV 222
F +A+FP LE A+LGF EPTPIQAQGWPMAL GRDLIGIAETGSGKTLAYLLPALV
Sbjct: 166 MFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALV 225
Query: 223 HVNAQPRLVQGDGPIVLVLAPTRELAVQIQQEAMKFGSRANIRITCIYGGAPKGPQIRDL 282
HV+AQPRL Q DGPIVL+LAPTRELAVQIQ+E+ KFG R+ +R TCIYGGAPKGPQIRDL
Sbjct: 226 HVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDL 285
Query: 283 QRGVEIVIATPGRLIDMLEAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 342
+RGVEIVIATPGRLIDMLE QHTNL+RVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ
Sbjct: 286 RRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 345
Query: 343 TLYWSATWPREVETLARQFLRNAYKVIIGSPDLKANHCINQVVEVVTDIEKYNRLIKLLK 402
TL WSATWPREVETLARQFLR+ YK IIGS DLKAN INQV+E+V EKYNRL+ LLK
Sbjct: 346 TLLWSATWPREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLK 405
Query: 403 EVMDGGRILIFMETKKGCDQVTRQLRMEGWPALSIHGDKNQAERDWVLAEFKSGRSPIMT 462
++MDG +ILIF+ETK+GCDQVTRQLRM+GWPAL+IHGDK Q+ERD VLAEFKSGRSPIMT
Sbjct: 406 QLMDGSKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMT 465
Query: 463 ATDVAARGLDVKDIK 477
ATDVAARGL I+
Sbjct: 466 ATDVAARGLVSSGIR 480
>AT3G01540.4 | Symbols: ATDRH1, DRH1 | DRH1 (DEAD box RNA helicase
1) | chr3:213084-216149 REVERSE
Length = 619
Score = 416 bits (1070), Expect = e-116, Method: Compositional matrix adjust.
Identities = 214/415 (51%), Positives = 281/415 (67%), Gaps = 9/415 (2%)
Query: 131 PAVRAMSEQEVMQYRASRDITVQGQDVPRPIRSFHEASFPGYCLEVFARLGFVEPTPIQA 190
P+ SE Y +ITV G VP P+ SF FP L GF PTPIQA
Sbjct: 127 PSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQA 186
Query: 191 QGWPMALTGRDLIGIAETGSGKTLAYLLPALVHVNAQPRLVQGD---GPIVLVLAPTREL 247
Q WP+A+ GRD++ IA+TGSGKTL YL+P +H+ + ++ D GP +LVL+PTREL
Sbjct: 187 QSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHL----QRIRNDSRMGPTILVLSPTREL 242
Query: 248 AVQIQQEAMKFGSRANIRITCIYGGAPKGPQIRDLQRGVEIVIATPGRLIDMLEAQHTNL 307
A QIQ+EA+KFG + I TC+YGGAPKGPQ+RDL+RG +IV+ATPGRL D+LE + +L
Sbjct: 243 ATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISL 302
Query: 308 QRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPREVETLARQFLRNAYK 367
++++YLVLDEADRMLDMGFEPQIRKIV +I RQTL ++ATWP+ V +A L N +
Sbjct: 303 RQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQ 362
Query: 368 VIIGSPD-LKANHCINQVVEVVTDIEKYNRLIKLLKEVMDGGRILIFMETKKGCDQVTRQ 426
V IG+ D L AN I Q +EVV +EK RL ++L+ G +++IF TK+ CDQ+TR
Sbjct: 363 VNIGNVDELVANKSITQHIEVVAPMEKQRRLEQILRSQEPGSKVIIFCSTKRMCDQLTRN 422
Query: 427 LRMEGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKFVINYDFPS 486
L + + A +IHGDK+Q ERD VL +F+SGR+P++ ATDVAARGLDVKDI+ V+NYDFP+
Sbjct: 423 LTRQ-FGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPN 481
Query: 487 SLEDYVHXXXXXXXXXXXXXXXXFFTHANAKYARELIKILQDAGQVVSPALSVMA 541
+EDYVH FF ++K+A +LIKIL+ A Q V P + MA
Sbjct: 482 GVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASDLIKILEGANQRVPPQIREMA 536
>AT3G01540.3 | Symbols: ATDRH1, DRH1 | DRH1 (DEAD box RNA helicase
1) | chr3:213084-216149 REVERSE
Length = 619
Score = 416 bits (1070), Expect = e-116, Method: Compositional matrix adjust.
Identities = 214/415 (51%), Positives = 281/415 (67%), Gaps = 9/415 (2%)
Query: 131 PAVRAMSEQEVMQYRASRDITVQGQDVPRPIRSFHEASFPGYCLEVFARLGFVEPTPIQA 190
P+ SE Y +ITV G VP P+ SF FP L GF PTPIQA
Sbjct: 127 PSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQA 186
Query: 191 QGWPMALTGRDLIGIAETGSGKTLAYLLPALVHVNAQPRLVQGD---GPIVLVLAPTREL 247
Q WP+A+ GRD++ IA+TGSGKTL YL+P +H+ + ++ D GP +LVL+PTREL
Sbjct: 187 QSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHL----QRIRNDSRMGPTILVLSPTREL 242
Query: 248 AVQIQQEAMKFGSRANIRITCIYGGAPKGPQIRDLQRGVEIVIATPGRLIDMLEAQHTNL 307
A QIQ+EA+KFG + I TC+YGGAPKGPQ+RDL+RG +IV+ATPGRL D+LE + +L
Sbjct: 243 ATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISL 302
Query: 308 QRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPREVETLARQFLRNAYK 367
++++YLVLDEADRMLDMGFEPQIRKIV +I RQTL ++ATWP+ V +A L N +
Sbjct: 303 RQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQ 362
Query: 368 VIIGSPD-LKANHCINQVVEVVTDIEKYNRLIKLLKEVMDGGRILIFMETKKGCDQVTRQ 426
V IG+ D L AN I Q +EVV +EK RL ++L+ G +++IF TK+ CDQ+TR
Sbjct: 363 VNIGNVDELVANKSITQHIEVVAPMEKQRRLEQILRSQEPGSKVIIFCSTKRMCDQLTRN 422
Query: 427 LRMEGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKFVINYDFPS 486
L + + A +IHGDK+Q ERD VL +F+SGR+P++ ATDVAARGLDVKDI+ V+NYDFP+
Sbjct: 423 LTRQ-FGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPN 481
Query: 487 SLEDYVHXXXXXXXXXXXXXXXXFFTHANAKYARELIKILQDAGQVVSPALSVMA 541
+EDYVH FF ++K+A +LIKIL+ A Q V P + MA
Sbjct: 482 GVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASDLIKILEGANQRVPPQIREMA 536
>AT3G01540.2 | Symbols: ATDRH1, DRH1 | DRH1 (DEAD box RNA helicase
1) | chr3:213084-216149 REVERSE
Length = 619
Score = 416 bits (1070), Expect = e-116, Method: Compositional matrix adjust.
Identities = 214/415 (51%), Positives = 281/415 (67%), Gaps = 9/415 (2%)
Query: 131 PAVRAMSEQEVMQYRASRDITVQGQDVPRPIRSFHEASFPGYCLEVFARLGFVEPTPIQA 190
P+ SE Y +ITV G VP P+ SF FP L GF PTPIQA
Sbjct: 127 PSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQA 186
Query: 191 QGWPMALTGRDLIGIAETGSGKTLAYLLPALVHVNAQPRLVQGD---GPIVLVLAPTREL 247
Q WP+A+ GRD++ IA+TGSGKTL YL+P +H+ + ++ D GP +LVL+PTREL
Sbjct: 187 QSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHL----QRIRNDSRMGPTILVLSPTREL 242
Query: 248 AVQIQQEAMKFGSRANIRITCIYGGAPKGPQIRDLQRGVEIVIATPGRLIDMLEAQHTNL 307
A QIQ+EA+KFG + I TC+YGGAPKGPQ+RDL+RG +IV+ATPGRL D+LE + +L
Sbjct: 243 ATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISL 302
Query: 308 QRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPREVETLARQFLRNAYK 367
++++YLVLDEADRMLDMGFEPQIRKIV +I RQTL ++ATWP+ V +A L N +
Sbjct: 303 RQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQ 362
Query: 368 VIIGSPD-LKANHCINQVVEVVTDIEKYNRLIKLLKEVMDGGRILIFMETKKGCDQVTRQ 426
V IG+ D L AN I Q +EVV +EK RL ++L+ G +++IF TK+ CDQ+TR
Sbjct: 363 VNIGNVDELVANKSITQHIEVVAPMEKQRRLEQILRSQEPGSKVIIFCSTKRMCDQLTRN 422
Query: 427 LRMEGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKFVINYDFPS 486
L + + A +IHGDK+Q ERD VL +F+SGR+P++ ATDVAARGLDVKDI+ V+NYDFP+
Sbjct: 423 LTRQ-FGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPN 481
Query: 487 SLEDYVHXXXXXXXXXXXXXXXXFFTHANAKYARELIKILQDAGQVVSPALSVMA 541
+EDYVH FF ++K+A +LIKIL+ A Q V P + MA
Sbjct: 482 GVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASDLIKILEGANQRVPPQIREMA 536
>AT3G01540.1 | Symbols: ATDRH1, DRH1 | DRH1 (DEAD box RNA helicase
1) | chr3:213084-216149 REVERSE
Length = 618
Score = 416 bits (1070), Expect = e-116, Method: Compositional matrix adjust.
Identities = 214/415 (51%), Positives = 281/415 (67%), Gaps = 9/415 (2%)
Query: 131 PAVRAMSEQEVMQYRASRDITVQGQDVPRPIRSFHEASFPGYCLEVFARLGFVEPTPIQA 190
P+ SE Y +ITV G VP P+ SF FP L GF PTPIQA
Sbjct: 127 PSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQA 186
Query: 191 QGWPMALTGRDLIGIAETGSGKTLAYLLPALVHVNAQPRLVQGD---GPIVLVLAPTREL 247
Q WP+A+ GRD++ IA+TGSGKTL YL+P +H+ + ++ D GP +LVL+PTREL
Sbjct: 187 QSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHL----QRIRNDSRMGPTILVLSPTREL 242
Query: 248 AVQIQQEAMKFGSRANIRITCIYGGAPKGPQIRDLQRGVEIVIATPGRLIDMLEAQHTNL 307
A QIQ+EA+KFG + I TC+YGGAPKGPQ+RDL+RG +IV+ATPGRL D+LE + +L
Sbjct: 243 ATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISL 302
Query: 308 QRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPREVETLARQFLRNAYK 367
++++YLVLDEADRMLDMGFEPQIRKIV +I RQTL ++ATWP+ V +A L N +
Sbjct: 303 RQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQ 362
Query: 368 VIIGSPD-LKANHCINQVVEVVTDIEKYNRLIKLLKEVMDGGRILIFMETKKGCDQVTRQ 426
V IG+ D L AN I Q +EVV +EK RL ++L+ G +++IF TK+ CDQ+TR
Sbjct: 363 VNIGNVDELVANKSITQHIEVVAPMEKQRRLEQILRSQEPGSKVIIFCSTKRMCDQLTRN 422
Query: 427 LRMEGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKFVINYDFPS 486
L + + A +IHGDK+Q ERD VL +F+SGR+P++ ATDVAARGLDVKDI+ V+NYDFP+
Sbjct: 423 LTRQ-FGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPN 481
Query: 487 SLEDYVHXXXXXXXXXXXXXXXXFFTHANAKYARELIKILQDAGQVVSPALSVMA 541
+EDYVH FF ++K+A +LIKIL+ A Q V P + MA
Sbjct: 482 GVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASDLIKILEGANQRVPPQIREMA 536
>AT3G06480.1 | Symbols: | DEAD box RNA helicase, putative |
chr3:1985703-1989672 REVERSE
Length = 1088
Score = 412 bits (1060), Expect = e-115, Method: Compositional matrix adjust.
Identities = 211/420 (50%), Positives = 279/420 (66%), Gaps = 11/420 (2%)
Query: 126 FYIESPAVRAMSEQEVMQYRASRDITVQGQDVPRPIRSFHEASFPGYCLEVFARLGFVEP 185
++ SP V +S E+ YR ++T G+++P P +F + P L GF P
Sbjct: 401 HFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELLSAGFPSP 458
Query: 186 TPIQAQGWPMALTGRDLIGIAETGSGKTLAYLLPALV---HVNAQPRLVQGDGPIVLVLA 242
TPIQAQ WP+AL RD++ IA+TGSGKTL YL+PA + H R +GP VL+LA
Sbjct: 459 TPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSR----NGPTVLILA 514
Query: 243 PTRELAVQIQQEAMKFGSRANIRITCIYGGAPKGPQIRDLQRGVEIVIATPGRLIDMLEA 302
PTRELA QIQ EA++FG + I TC+YGGAPKGPQ+++L+RG +IV+ATPGRL D+LE
Sbjct: 515 PTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELERGADIVVATPGRLNDILEM 574
Query: 303 QHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPREVETLARQFL 362
+ + Q+V+ LVLDEADRMLDMGFEPQIRKIV++I P RQTL ++ATWP+EV +A L
Sbjct: 575 KMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLL 634
Query: 363 RNAYKVIIGSPD-LKANHCINQVVEVVTDIEKYNRLIKLLKEVMDGGRILIFMETKKGCD 421
N +V IG D L AN I Q VEVV +EK RL ++L+ G +++IF TK+ CD
Sbjct: 635 VNPVQVNIGRVDELAANKAITQYVEVVPQMEKERRLEQILRSQERGSKVIIFCSTKRLCD 694
Query: 422 QVTRQLRMEGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKFVIN 481
+ R + + A+ IHGDK Q ERDWVL +F+SG+S ++ ATDVAARGLD+KDI+ VIN
Sbjct: 695 HLARSVGRH-FGAVVIHGDKTQGERDWVLNQFRSGKSCVLIATDVAARGLDIKDIRVVIN 753
Query: 482 YDFPSSLEDYVHXXXXXXXXXXXXXXXXFFTHANAKYARELIKILQDAGQVVSPALSVMA 541
YDFP+ +EDYVH FFT + KYA +LIK+L+ A Q V P + +A
Sbjct: 754 YDFPTGVEDYVHRIGRTGRAGATGVAFTFFTEQDWKYAPDLIKVLEGANQQVPPQVRDIA 813
>AT5G14610.1 | Symbols: | ATP binding / ATP-dependent helicase |
chr5:4711274-4714716 FORWARD
Length = 712
Score = 392 bits (1008), Expect = e-109, Method: Compositional matrix adjust.
Identities = 195/365 (53%), Positives = 261/365 (71%), Gaps = 9/365 (2%)
Query: 181 GFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLAYLLPALVHVNAQPRLVQGD---GPI 237
GF P+PIQAQ WP+A+ RD++ IA+TGSGKTL YL+P +H+ + + D GP
Sbjct: 248 GFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHL----QRIHNDSRMGPT 303
Query: 238 VLVLAPTRELAVQIQQEAMKFGSRANIRITCIYGGAPKGPQIRDLQRGVEIVIATPGRLI 297
+LVL+PTRELA QIQ EA+KFG + I C+YGGAPKGPQ+++++RGV+IV+ATPGRL
Sbjct: 304 ILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLN 363
Query: 298 DMLEAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPREVETL 357
D+LE + +L +V+YLVLDEADRMLDMGFEPQIRKIV+++ RQTL ++ATWP+EV +
Sbjct: 364 DILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVRKI 423
Query: 358 ARQFLRNAYKVIIGSPD-LKANHCINQVVEVVTDIEKYNRLIKLLKEVMDGGRILIFMET 416
A L N +V IG+ D L AN I Q +EV+ +EK++RL ++L+ G +I+IF T
Sbjct: 424 AADLLVNPAQVNIGNVDELVANKSITQTIEVLAPMEKHSRLEQILRSQEPGSKIIIFCST 483
Query: 417 KKGCDQVTRQLRMEGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDI 476
K+ CDQ+ R L + A +IHGDK+QAERD VL +F+SGR+P++ ATDVAARGLDVKDI
Sbjct: 484 KRMCDQLARNL-TRTFGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDI 542
Query: 477 KFVINYDFPSSLEDYVHXXXXXXXXXXXXXXXXFFTHANAKYARELIKILQDAGQVVSPA 536
+ V+NYDFP+ +EDYVH FF +AK+A +LIKIL+ A Q V P
Sbjct: 543 RVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKILEGANQKVPPQ 602
Query: 537 LSVMA 541
+ MA
Sbjct: 603 VREMA 607
>AT1G20920.2 | Symbols: | DEAD box RNA helicase, putative |
chr1:7286345-7288831 FORWARD
Length = 828
Score = 382 bits (981), Expect = e-106, Method: Compositional matrix adjust.
Identities = 188/424 (44%), Positives = 277/424 (65%), Gaps = 4/424 (0%)
Query: 121 PFEKNFYIESPAVRAMSEQEVMQYRASRDITVQGQDVPRPIRSFHEASFPGYCLEVFARL 180
PF KNFYIE + M+++EV YR ++ V G+DVPRPI+ +H+ L+ +L
Sbjct: 150 PFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKKL 209
Query: 181 GFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLAYLLPALVHVNAQPRLVQGDGPIVLV 240
+ +P PIQ Q P+ ++GRD IG+A+TGSGKTL ++LP L H+ QP + GDGPI LV
Sbjct: 210 NYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLV 269
Query: 241 LAPTRELAVQIQQEAMKFGSRANIRITCIYGGAPKGPQIRDLQRGVEIVIATPGRLIDML 300
+APTREL QI + KF IR +YGG+ QI +L+RG EIV+ TPGR+ID+L
Sbjct: 270 MAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDIL 329
Query: 301 ---EAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPREVETL 357
+ TNL+RVT+LV+DEADRM DMGFEPQI +I+ IRP+RQT+ +SAT+PR+VETL
Sbjct: 330 CTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQTVLFSATFPRQVETL 389
Query: 358 ARQFLRNAYKVIIGSPDLKANHCINQVVEVVTDIEKYNRLIKLLKEVMDGGRILIFMETK 417
AR+ L ++ +G + N I Q+VEV + +++ RL++LL E + G+IL+F++++
Sbjct: 390 ARKVLNKPVEIQVGGRSV-VNKDITQLVEVRPESDRFLRLLELLGEWSEKGKILVFVQSQ 448
Query: 418 KGCDQVTRQLRMEGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIK 477
+ CD + R + +P LS+HG K+Q +R+ +++FK+ ++ AT VAARGLDVK+++
Sbjct: 449 EKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLLIATSVAARGLDVKELE 508
Query: 478 FVINYDFPSSLEDYVHXXXXXXXXXXXXXXXXFFTHANAKYARELIKILQDAGQVVSPAL 537
V+N+D P+ EDYVH F + +AKYA +L+K L+ + Q V L
Sbjct: 509 LVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKALELSEQPVPDDL 568
Query: 538 SVMA 541
+A
Sbjct: 569 KALA 572
>AT1G20920.1 | Symbols: | DEAD box RNA helicase, putative |
chr1:7285331-7288831 FORWARD
Length = 1166
Score = 382 bits (980), Expect = e-106, Method: Compositional matrix adjust.
Identities = 188/424 (44%), Positives = 277/424 (65%), Gaps = 4/424 (0%)
Query: 121 PFEKNFYIESPAVRAMSEQEVMQYRASRDITVQGQDVPRPIRSFHEASFPGYCLEVFARL 180
PF KNFYIE + M+++EV YR ++ V G+DVPRPI+ +H+ L+ +L
Sbjct: 488 PFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKKL 547
Query: 181 GFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLAYLLPALVHVNAQPRLVQGDGPIVLV 240
+ +P PIQ Q P+ ++GRD IG+A+TGSGKTL ++LP L H+ QP + GDGPI LV
Sbjct: 548 NYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLV 607
Query: 241 LAPTRELAVQIQQEAMKFGSRANIRITCIYGGAPKGPQIRDLQRGVEIVIATPGRLIDML 300
+APTREL QI + KF IR +YGG+ QI +L+RG EIV+ TPGR+ID+L
Sbjct: 608 MAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDIL 667
Query: 301 ---EAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPREVETL 357
+ TNL+RVT+LV+DEADRM DMGFEPQI +I+ IRP+RQT+ +SAT+PR+VETL
Sbjct: 668 CTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQTVLFSATFPRQVETL 727
Query: 358 ARQFLRNAYKVIIGSPDLKANHCINQVVEVVTDIEKYNRLIKLLKEVMDGGRILIFMETK 417
AR+ L ++ +G + N I Q+VEV + +++ RL++LL E + G+IL+F++++
Sbjct: 728 ARKVLNKPVEIQVGGRSV-VNKDITQLVEVRPESDRFLRLLELLGEWSEKGKILVFVQSQ 786
Query: 418 KGCDQVTRQLRMEGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIK 477
+ CD + R + +P LS+HG K+Q +R+ +++FK+ ++ AT VAARGLDVK+++
Sbjct: 787 EKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLLIATSVAARGLDVKELE 846
Query: 478 FVINYDFPSSLEDYVHXXXXXXXXXXXXXXXXFFTHANAKYARELIKILQDAGQVVSPAL 537
V+N+D P+ EDYVH F + +AKYA +L+K L+ + Q V L
Sbjct: 847 LVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKALELSEQPVPDDL 906
Query: 538 SVMA 541
+A
Sbjct: 907 KALA 910
>AT2G47330.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr2:19436153-19438687 REVERSE
Length = 760
Score = 362 bits (929), Expect = e-100, Method: Compositional matrix adjust.
Identities = 189/423 (44%), Positives = 263/423 (62%), Gaps = 3/423 (0%)
Query: 121 PFEKNFYIESPAVRAMSEQEVMQYRASRDITVQGQDVPRPIRSFHEASFPGYCLEVFARL 180
P K+FY E ++ M+EQE YR I V G DV RP+++F + F + +
Sbjct: 187 PINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSAIKKQ 246
Query: 181 GFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLAYLLPALVHVNAQPRLVQGDGPIVLV 240
+ +PT IQ Q P+ L+GRD+IGIA+TGSGKT A++LP +VH+ QP L + +GPI ++
Sbjct: 247 AYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVI 306
Query: 241 LAPTRELAVQIQQEAMKFGSRANIRITCIYGGAPKGPQIRDLQRGVEIVIATPGRLIDML 300
APTRELA QI EA KF +R++ +YGG K Q ++L+ G EIV+ATPGRLIDML
Sbjct: 307 CAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKELKAGCEIVVATPGRLIDML 366
Query: 301 EAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPREVETLARQ 360
+ + + R +YLVLDEADRM D+GFEPQ+R IV QIRPDRQTL +SAT P +VE LAR+
Sbjct: 367 KMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPWKVEKLARE 426
Query: 361 FLRNAYKVIIGSPDLKANHCINQVVEVV-TDIEKYNRLIKLLKEVMDGGRILIFMETKKG 419
L + +V +G + AN I QVV V+ +D EK L++ L ++D G +L+F K
Sbjct: 427 ILSDPIRVTVGEVGM-ANEDITQVVNVIPSDAEKLPWLLEKLPGMIDEGDVLVFASKKAT 485
Query: 420 CDQVTRQLRMEGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKFV 479
D++ QL + + ++HGDK+QA R L +FKSG ++ ATDVAARGLD+K +K V
Sbjct: 486 VDEIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSGVHHVLIATDVAARGLDIKSLKTV 545
Query: 480 INYDFPSSLEDYVHXXXXXXXXXXXXXXX-XFFTHANAKYARELIKILQDAGQVVSPALS 538
+NYD ++ +VH T A++A EL+ L AGQ V P L+
Sbjct: 546 VNYDIAKDMDMHVHRIGRTGRAGDRDGVAYTLVTQREARFAGELVNSLVAAGQNVPPELT 605
Query: 539 VMA 541
+A
Sbjct: 606 DLA 608
>AT3G09620.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr3:2949157-2952210 REVERSE
Length = 989
Score = 338 bits (868), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 178/424 (41%), Positives = 257/424 (60%), Gaps = 33/424 (7%)
Query: 121 PFEKNFYIESPAVRAMSEQEVMQYRASRDITVQGQDVPRPIRSFHEASFPGYCLEVFARL 180
PF KNFYIE + M++ V YR ++ V G+DVPRPI+ +H+ L+ +L
Sbjct: 355 PFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDTLKKL 414
Query: 181 GFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLAYLLPALVHVNAQPRLVQGDGPIVLV 240
+ +P PIQAQ P+ ++GRD IG+A+TGSGKTL ++LP L H+ QP + GDGPI LV
Sbjct: 415 NYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLV 474
Query: 241 LAPTRELAVQIQQEAMKFGSRANIRITCIYGGAPKGPQIRDLQRGVEIVIATPGRLIDML 300
+APTREL QI + KF I +YGG+ QI +L+RG EIV+ TPGR+ID+L
Sbjct: 475 MAPTRELVQQIYSDIRKFSKALGIICVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDIL 534
Query: 301 ---EAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPREVETL 357
+ TNL+RVTYLV+DEADRM DMGFEPQI +IV IRPDRQT+ +SAT+PR+VETL
Sbjct: 535 CTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVETL 594
Query: 358 ARQFLRNAYKVIIGSPDLKANHCINQVVEVVTDIEKYNRLIKLLKEVMDGGRILIFMETK 417
AR+ L ++ +G + N I Q+VE+ + E+++RL++LL E + G++L+F+ ++
Sbjct: 595 ARKVLNKPVEIQVGGRSV-VNKDITQLVEIRPESERFSRLLELLGEWYEKGKVLVFVRSQ 653
Query: 418 KGCDQVTRQLRMEGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIK 477
+ +++FKS ++ AT VAARGLDVK+++
Sbjct: 654 EKS-----------------------------ISDFKSDVCNLLIATSVAARGLDVKELE 684
Query: 478 FVINYDFPSSLEDYVHXXXXXXXXXXXXXXXXFFTHANAKYARELIKILQDAGQVVSPAL 537
V+N+D P+ EDYVH F + +AKYA +L+K L+ + Q V +
Sbjct: 685 LVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKALELSEQPVPDDV 744
Query: 538 SVMA 541
+A
Sbjct: 745 KAVA 748
>AT1G31970.1 | Symbols: STRS1 | STRS1 (STRESS RESPONSE SUPPRESSOR
1); ATP-dependent helicase | chr1:11479901-11482687
FORWARD
Length = 537
Score = 330 bits (847), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 175/380 (46%), Positives = 243/380 (63%), Gaps = 9/380 (2%)
Query: 161 IRSFHEASFPGYCLEVFARLGFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLAYLLPA 220
+++F E++ P L+ F +P+PIQ+ WP L GRDLIGIA+TGSGKTLA+ +PA
Sbjct: 115 LKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPA 172
Query: 221 LVHVNAQPRLVQGDG----PIVLVLAPTRELAVQIQQEAMKFGSRANIRITCIYGGAPKG 276
++HV + + + G P LVL+PTRELAVQI + G ++ C+YGG+ KG
Sbjct: 173 IMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKG 232
Query: 277 PQIRDLQRGVEIVIATPGRLIDMLEAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVSQ 336
PQI ++ GV+IVI TPGRL D++E+ L V+++VLDEADRMLDMGFE +R I+S
Sbjct: 233 PQISAIRSGVDIVIGTPGRLRDLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFILSN 292
Query: 337 IRPDRQTLYWSATWPREVETLARQFLR-NAYKVIIGSPDLKANHCINQVVEVVTDIEKYN 395
RQ + +SATWP +V LA++F+ N KVIIGS DL ANH + Q++EV+ + +
Sbjct: 293 TNKVRQMVMFSATWPLDVHKLAQEFMDPNPIKVIIGSVDLAANHDVMQIIEVLDERARDQ 352
Query: 396 RLIKLLKEVMDG--GRILIFMETKKGCDQVTRQLRMEGWPALSIHGDKNQAERDWVLAEF 453
RLI LL++ R+L+F K +++ R L+ GW A+SIHG+K Q+ER L+ F
Sbjct: 353 RLIALLEKYHKSQKNRVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLF 412
Query: 454 KSGRSPIMTATDVAARGLDVKDIKFVINYDFPSSLEDYVHXXXXXXXXXXXXXXXXFFTH 513
K G P++ ATDVAARGLD+ D++ VINY FP + EDYVH FFT
Sbjct: 413 KEGSCPLLVATDVAARGLDIPDVEVVINYTFPLTTEDYVHRIGRTGRAGKKGVAHTFFTP 472
Query: 514 ANAKYARELIKILQDAGQVV 533
N A EL+ +L++AGQVV
Sbjct: 473 LNKGLAGELVNVLREAGQVV 492
>AT2G42520.1 | Symbols: | DEAD box RNA helicase, putative |
chr2:17712460-17715822 FORWARD
Length = 633
Score = 320 bits (820), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 187/446 (41%), Positives = 262/446 (58%), Gaps = 27/446 (6%)
Query: 117 RNLVPFEKNFYIESPAVRAMSEQE--VMQYRASRDITVQ--GQDVPRPIRSFHEASFPGY 172
R + PFE + PA +EQ+ V+ + A DI ++ G +VP P+ +F E G
Sbjct: 113 REVNPFENDDSEPEPA---FTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDL-GE 168
Query: 173 CLEV-FARLGFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLAYLLPALV------HVN 225
L + R +V+PTP+Q P+ L GRDL+ A+TGSGKT A+ P + HV
Sbjct: 169 ALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQ 228
Query: 226 AQPRLVQGDGPIVLVLAPTRELAVQIQQEAMKFGSRANIRITCIYGGAPKGPQIRDLQRG 285
+PR + P+ ++L+PTRELA QI EA KF + +++ YGG P Q+R+L+RG
Sbjct: 229 -RPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELERG 287
Query: 286 VEIVIATPGRLIDMLEAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVSQI----RPDR 341
V+I++ATPGRL D+LE ++Q + +L LDEADRMLDMGFEPQIRKIV Q+ R R
Sbjct: 288 VDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVR 347
Query: 342 QTLYWSATWPREVETLARQFLRNAYKVIIGSPDLKANHCINQVVEVVTDIEKYNRLIKLL 401
QTL +SAT+PRE++ LA FL N + +G + I Q VE V D +K + L+ LL
Sbjct: 348 QTLLFSATFPREIQRLAADFLANYIFLAVGRVG-SSTDLIVQRVEFVLDSDKRSHLMDLL 406
Query: 402 KEVMDGG------RILIFMETKKGCDQVTRQLRMEGWPALSIHGDKNQAERDWVLAEFKS 455
+ G L+F+ETK+G D + L + G+PA SIHGD+ Q ER+ L FKS
Sbjct: 407 HAQRENGIQGKQALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAFKS 466
Query: 456 GRSPIMTATDVAARGLDVKDIKFVINYDFPSSLEDYVHXXXXXXXXXXXXXXXXFFTHAN 515
GR+PI+ ATDVAARGLD+ + V+N+D P+ ++DYVH FF N
Sbjct: 467 GRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNDGN 526
Query: 516 AKYARELIKILQDAGQVVSPALSVMA 541
AR L +++Q+A Q V L+ A
Sbjct: 527 TSLARPLAELMQEANQEVPEWLTRYA 552
>AT3G58570.1 | Symbols: | DEAD box RNA helicase, putative |
chr3:21668076-21671329 FORWARD
Length = 646
Score = 320 bits (819), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 182/427 (42%), Positives = 257/427 (60%), Gaps = 22/427 (5%)
Query: 135 AMSEQE--VMQYRASRDITVQ--GQDVPRPIRSFHEASFPGYCLEV-FARLGFVEPTPIQ 189
A++EQE V+ + A DI ++ G +VP P+ +F E G L + R +V+PTP+Q
Sbjct: 115 AVNEQENTVINFEAYEDIPIETSGDNVPPPVNTFAEIDL-GEALNLNIQRCKYVKPTPVQ 173
Query: 190 AQGWPMALTGRDLIGIAETGSGKTLAYLLPALVHVNA-----QPRLVQGDGPIVLVLAPT 244
P+ GRDL+ A+TGSGKT A+ P + + +PR V+G P+ ++L+PT
Sbjct: 174 RNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPT 233
Query: 245 RELAVQIQQEAMKFGSRANIRITCIYGGAPKGPQIRDLQRGVEIVIATPGRLIDMLEAQH 304
RELA QI EA KF + +++ YGG P QIR+L+RGV+I++ATPGRL D+LE
Sbjct: 234 RELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIRELERGVDILVATPGRLNDLLERGR 293
Query: 305 TNLQRVTYLVLDEADRMLDMGFEPQIRKIVSQIR---PD-RQTLYWSATWPREVETLARQ 360
+LQ V +L LDEADRMLDMGFEPQIRKIV Q+ P RQT+ +SAT+PRE++ LA
Sbjct: 294 VSLQMVRFLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPREIQRLASD 353
Query: 361 FLRNAYKVIIGSPDLKANHCINQVVEVVTDIEKYNRLIKLLKEVMDGGR------ILIFM 414
FL N + +G + I Q VE V D +K + L+ LL + G L+F+
Sbjct: 354 FLSNYIFLAVGRVG-SSTDLIVQRVEFVHDSDKRSHLMDLLHAQRENGNQGKQALTLVFV 412
Query: 415 ETKKGCDQVTRQLRMEGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVK 474
ETKKG D + L + G+PA +IHGD++Q ER+ L FK+GR+PI+ ATDVAARGLD+
Sbjct: 413 ETKKGADSLENWLCINGFPATTIHGDRSQQEREVALRSFKTGRTPILVATDVAARGLDIP 472
Query: 475 DIKFVINYDFPSSLEDYVHXXXXXXXXXXXXXXXXFFTHANAKYARELIKILQDAGQVVS 534
+ V+N+D P+ ++DYVH FF N A+ L +++Q+A Q V
Sbjct: 473 HVAHVVNFDLPNDIDDYVHRIGRTGRAGNSGLATAFFNDNNTTMAKPLAELMQEANQEVP 532
Query: 535 PALSVMA 541
L+ A
Sbjct: 533 DWLTRYA 539
>AT3G58510.3 | Symbols: | DEAD box RNA helicase, putative (RH11) |
chr3:21651585-21654441 FORWARD
Length = 612
Score = 306 bits (784), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 177/441 (40%), Positives = 253/441 (57%), Gaps = 20/441 (4%)
Query: 117 RNLVPFEKNFYIESPAVRAMSEQEVMQYRASRDITVQ--GQDVPRPIRSFHEASFPGYCL 174
R + PF + +E V E + + A DI V+ G DVP P+ +F +
Sbjct: 106 REVNPFGDDAELEP--VFTEQENTGINFDAYEDIPVETSGGDVPPPVNTFADIDLGDALN 163
Query: 175 EVFARLGFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLAYLLPALV------HVNAQP 228
R +V PTP+Q P+ L RDL+ A+TGSGKT A+ P + HV +P
Sbjct: 164 LNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGIMKDQHVE-RP 222
Query: 229 RLVQGDGPIVLVLAPTRELAVQIQQEAMKFGSRANIRITCIYGGAPKGPQIRDLQRGVEI 288
R + P ++L+PTRELA QI EA KF + +++ YGG P Q+R+L+RG +I
Sbjct: 223 RGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDI 282
Query: 289 VIATPGRLIDMLEAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVSQI----RPDRQTL 344
++ATPGRL D+LE ++Q + +L LDEADRMLDMGFEPQIRKIV Q+ R RQT+
Sbjct: 283 LVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTM 342
Query: 345 YWSATWPREVETLARQFLRNAYKVIIGSPDLKANHCINQVVEVVTDIEKYNRLIKLL--- 401
+SAT+P +++ LA F+ N + +G + I Q VE V + +K + L+ LL
Sbjct: 343 LFSATFPSQIQRLAADFMSNYIFLAVGRVG-SSTDLITQRVEFVQESDKRSHLMDLLHAQ 401
Query: 402 KEVMDGGRI-LIFMETKKGCDQVTRQLRMEGWPALSIHGDKNQAERDWVLAEFKSGRSPI 460
+E D + L+F+ETK+G D + L M +PA SIHGD+ Q ER+ L FK+GR+PI
Sbjct: 402 RETQDKQSLTLVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTPI 461
Query: 461 MTATDVAARGLDVKDIKFVINYDFPSSLEDYVHXXXXXXXXXXXXXXXXFFTHANAKYAR 520
+ ATDVAARGLD+ + V+N+D P+ ++DYVH FF NA+ AR
Sbjct: 462 LVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNENNAQLAR 521
Query: 521 ELIKILQDAGQVVSPALSVMA 541
L +++Q+A Q V L+ A
Sbjct: 522 SLAELMQEANQEVPEWLTRYA 542
>AT3G58510.2 | Symbols: | DEAD box RNA helicase, putative (RH11) |
chr3:21651585-21654441 FORWARD
Length = 612
Score = 306 bits (784), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 177/441 (40%), Positives = 253/441 (57%), Gaps = 20/441 (4%)
Query: 117 RNLVPFEKNFYIESPAVRAMSEQEVMQYRASRDITVQ--GQDVPRPIRSFHEASFPGYCL 174
R + PF + +E V E + + A DI V+ G DVP P+ +F +
Sbjct: 106 REVNPFGDDAELEP--VFTEQENTGINFDAYEDIPVETSGGDVPPPVNTFADIDLGDALN 163
Query: 175 EVFARLGFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLAYLLPALV------HVNAQP 228
R +V PTP+Q P+ L RDL+ A+TGSGKT A+ P + HV +P
Sbjct: 164 LNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGIMKDQHVE-RP 222
Query: 229 RLVQGDGPIVLVLAPTRELAVQIQQEAMKFGSRANIRITCIYGGAPKGPQIRDLQRGVEI 288
R + P ++L+PTRELA QI EA KF + +++ YGG P Q+R+L+RG +I
Sbjct: 223 RGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDI 282
Query: 289 VIATPGRLIDMLEAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVSQI----RPDRQTL 344
++ATPGRL D+LE ++Q + +L LDEADRMLDMGFEPQIRKIV Q+ R RQT+
Sbjct: 283 LVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTM 342
Query: 345 YWSATWPREVETLARQFLRNAYKVIIGSPDLKANHCINQVVEVVTDIEKYNRLIKLL--- 401
+SAT+P +++ LA F+ N + +G + I Q VE V + +K + L+ LL
Sbjct: 343 LFSATFPSQIQRLAADFMSNYIFLAVGRVG-SSTDLITQRVEFVQESDKRSHLMDLLHAQ 401
Query: 402 KEVMDGGRI-LIFMETKKGCDQVTRQLRMEGWPALSIHGDKNQAERDWVLAEFKSGRSPI 460
+E D + L+F+ETK+G D + L M +PA SIHGD+ Q ER+ L FK+GR+PI
Sbjct: 402 RETQDKQSLTLVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTPI 461
Query: 461 MTATDVAARGLDVKDIKFVINYDFPSSLEDYVHXXXXXXXXXXXXXXXXFFTHANAKYAR 520
+ ATDVAARGLD+ + V+N+D P+ ++DYVH FF NA+ AR
Sbjct: 462 LVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNENNAQLAR 521
Query: 521 ELIKILQDAGQVVSPALSVMA 541
L +++Q+A Q V L+ A
Sbjct: 522 SLAELMQEANQEVPEWLTRYA 542
>AT3G58510.1 | Symbols: | DEAD box RNA helicase, putative (RH11) |
chr3:21651585-21654441 FORWARD
Length = 612
Score = 306 bits (784), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 177/441 (40%), Positives = 253/441 (57%), Gaps = 20/441 (4%)
Query: 117 RNLVPFEKNFYIESPAVRAMSEQEVMQYRASRDITVQ--GQDVPRPIRSFHEASFPGYCL 174
R + PF + +E V E + + A DI V+ G DVP P+ +F +
Sbjct: 106 REVNPFGDDAELEP--VFTEQENTGINFDAYEDIPVETSGGDVPPPVNTFADIDLGDALN 163
Query: 175 EVFARLGFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLAYLLPALV------HVNAQP 228
R +V PTP+Q P+ L RDL+ A+TGSGKT A+ P + HV +P
Sbjct: 164 LNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGIMKDQHVE-RP 222
Query: 229 RLVQGDGPIVLVLAPTRELAVQIQQEAMKFGSRANIRITCIYGGAPKGPQIRDLQRGVEI 288
R + P ++L+PTRELA QI EA KF + +++ YGG P Q+R+L+RG +I
Sbjct: 223 RGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDI 282
Query: 289 VIATPGRLIDMLEAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVSQI----RPDRQTL 344
++ATPGRL D+LE ++Q + +L LDEADRMLDMGFEPQIRKIV Q+ R RQT+
Sbjct: 283 LVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTM 342
Query: 345 YWSATWPREVETLARQFLRNAYKVIIGSPDLKANHCINQVVEVVTDIEKYNRLIKLL--- 401
+SAT+P +++ LA F+ N + +G + I Q VE V + +K + L+ LL
Sbjct: 343 LFSATFPSQIQRLAADFMSNYIFLAVGRVG-SSTDLITQRVEFVQESDKRSHLMDLLHAQ 401
Query: 402 KEVMDGGRI-LIFMETKKGCDQVTRQLRMEGWPALSIHGDKNQAERDWVLAEFKSGRSPI 460
+E D + L+F+ETK+G D + L M +PA SIHGD+ Q ER+ L FK+GR+PI
Sbjct: 402 RETQDKQSLTLVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTPI 461
Query: 461 MTATDVAARGLDVKDIKFVINYDFPSSLEDYVHXXXXXXXXXXXXXXXXFFTHANAKYAR 520
+ ATDVAARGLD+ + V+N+D P+ ++DYVH FF NA+ AR
Sbjct: 462 LVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNENNAQLAR 521
Query: 521 ELIKILQDAGQVVSPALSVMA 541
L +++Q+A Q V L+ A
Sbjct: 522 SLAELMQEANQEVPEWLTRYA 542
>AT2G33730.1 | Symbols: | DEAD box RNA helicase, putative |
chr2:14272755-14274956 REVERSE
Length = 733
Score = 289 bits (740), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 163/423 (38%), Positives = 243/423 (57%), Gaps = 22/423 (5%)
Query: 136 MSEQEVMQYRASRDITVQGQDVPRPIRSFHEASFPGYCLEVFARLGFVEPTPIQAQGWPM 195
M+E++ +R +I+ +G +PRP+RS+ E+ L+ R G+ +P+PIQ P+
Sbjct: 287 MTERDWRIFREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPL 346
Query: 196 ALTGRDLIGIAETGSGKTLAYLLPALVHVNAQPRLVQ---GDGPIVLVLAPTRELAVQIQ 252
L RD+IGIAETGSGKT A++LP L +++ P + + +GP +V+APTRELA QI+
Sbjct: 347 GLQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIE 406
Query: 253 QEAMKFGSRANIRITCIYGGAPKGPQIRDLQRGVEIVIATPGRLIDMLEAQHTNLQRVTY 312
+E +KF R+T I GG Q + +G EIVIATPGRLID LE ++ L + Y
Sbjct: 407 EETVKFAHYLGFRVTSIVGGQSIEEQGLKITQGCEIVIATPGRLIDCLERRYAVLNQCNY 466
Query: 313 LVLDEADRMLDMGFEPQIRKIV-----SQIRPD------------RQTLYWSATWPREVE 355
+VLDEADRM+DMGFEPQ+ ++ S ++P+ R T +SAT P VE
Sbjct: 467 VVLDEADRMIDMGFEPQVAGVLDAMPSSNLKPENEEEELDEKKIYRTTYMFSATMPPGVE 526
Query: 356 TLARQFLRNAYKVIIGSPDLKANHCINQVVEVVTDIEKYNRLIKLLKEVMDGGRILIFME 415
LAR++LRN V IG+ K I+Q V ++ + EK+ RL KLL E+ + I +F+
Sbjct: 527 RLARKYLRNPVVVTIGTAG-KTTDLISQHVIMMKESEKFFRLQKLLDELGEKTAI-VFVN 584
Query: 416 TKKGCDQVTRQLRMEGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKD 475
TKK CD + + L G+ ++HG K+Q +R+ L F++ R ++ ATDV RG+D+ D
Sbjct: 585 TKKNCDSIAKNLDKAGYRVTTLHGGKSQEQREISLEGFRAKRYNVLVATDVVGRGIDIPD 644
Query: 476 IKFVINYDFPSSLEDYVHXXXXXXXXXXXXXXXXFFTHANAKYARELIKILQDAGQVVSP 535
+ VINYD P +E Y H F T + + +L ++L + V P
Sbjct: 645 VAHVINYDMPKHIEMYTHRIGRTGRAGKSGVATSFLTLHDTEVFYDLKQMLVQSNSAVPP 704
Query: 536 ALS 538
L+
Sbjct: 705 ELA 707
>AT5G51280.1 | Symbols: | DEAD-box protein abstrakt, putative |
chr5:20858682-20860871 FORWARD
Length = 591
Score = 268 bits (685), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 156/417 (37%), Positives = 232/417 (55%), Gaps = 15/417 (3%)
Query: 133 VRAMSEQEVMQYRASRDITVQGQDVPRPIRSFHEASFPGYCLEVFARLGFVEPTPIQAQG 192
+R MS ++ R I V G D+P PI++F + FP L+ G V+PTPIQ QG
Sbjct: 117 IRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQG 176
Query: 193 WPMALTGRDLIGIAETGSGKTLAYLLPALVHVNAQPRLVQ----GDGPIVLVLAPTRELA 248
P+ L GRD+IGIA TGSGKTL ++LP ++ + Q ++ G+GPI L++ P+RELA
Sbjct: 177 LPVILAGRDMIGIAFTGSGKTLVFVLP-MIMIALQEEMMMPIAAGEGPIGLIVCPSRELA 235
Query: 249 VQIQQEAMKF------GSRANIRITCIYGGAPKGPQIRDLQRGVEIVIATPGRLIDMLEA 302
Q + +F +R GG Q+ ++RGV IV+ATPGRL DML
Sbjct: 236 RQTYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVHIVVATPGRLKDMLAK 295
Query: 303 QHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPREVETLARQFL 362
+ +L YL LDEADR++D+GFE IR++ + RQTL +SAT P +++ AR L
Sbjct: 296 KKMSLDACRYLTLDEADRLVDLGFEDDIREVFDHFKSQRQTLLFSATMPTKIQIFARSAL 355
Query: 363 RNAYKVIIGSPDLKANHCINQVVEVVTDIEKYNRLIKLLKEVMDGGRILIFMETKKGCDQ 422
V +G AN + Q VE V K L++ L++ +LIF E K D
Sbjct: 356 VKPVTVNVGRAG-AANLDVIQEVEYVKQEAKIVYLLECLQKT--SPPVLIFCENKADVDD 412
Query: 423 VTRQLRMEGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKFVINY 482
+ L ++G A++IHG K+Q +R++ ++ FK+G+ ++ ATDVA++GLD DI+ VINY
Sbjct: 413 IHEYLLLKGVEAVAIHGGKDQEDREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINY 472
Query: 483 DFPSSLEDYVHXXXXXXXXXXXXXXXXFFTHANAKYA-RELIKILQDAGQVVSPALS 538
D P+ +E+YVH F ++ +L +LQ+A Q + P L+
Sbjct: 473 DMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLA 529
>AT4G33370.1 | Symbols: | DEAD-box protein abstrakt, putative |
chr4:16069672-16071408 REVERSE
Length = 542
Score = 263 bits (673), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 154/416 (37%), Positives = 230/416 (55%), Gaps = 13/416 (3%)
Query: 133 VRAMSEQEVMQYRASRDITVQGQDVPRPIRSFHEASFPGYCLEVFARLGFVEPTPIQAQG 192
VR MS +++ R ITV G+D+P PI++F + FP L + G + PTPIQ QG
Sbjct: 68 VRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQG 127
Query: 193 WPMALTGRDLIGIAETGSGKTLAYLLPALVHVNAQPRLV---QGDGPIVLVLAPTRELAV 249
P+ L+GRD+IGIA TGSGKTL ++LP ++ + ++ G+GPI LV+ P+RELA
Sbjct: 128 LPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAK 187
Query: 250 QIQQEAMKFGSRA------NIRITCIYGGAPKGPQIRDLQRGVEIVIATPGRLIDMLEAQ 303
Q +F + +R GG Q+ +++GV IV+ATPGRL D+L +
Sbjct: 188 QTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVATPGRLKDILAKK 247
Query: 304 HTNLQRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPREVETLARQFLR 363
+L L LDEADR++D+GFE IR + + RQTL +SAT P +++ A L
Sbjct: 248 KMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLLFSATMPAKIQIFATSALV 307
Query: 364 NAYKVIIGSPDLKANHCINQVVEVVTDIEKYNRLIKLLKEVMDGGRILIFMETKKGCDQV 423
V +G AN + Q VE V K L++ L++ +LIF E K D +
Sbjct: 308 KPVTVNVGRAG-AANLDVIQEVEYVKQEAKIVYLLECLQKTTP--PVLIFCENKADVDDI 364
Query: 424 TRQLRMEGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKFVINYD 483
L ++G A++IHG K+Q +RD+ ++ FK+G+ ++ ATDVA++GLD DI+ VINYD
Sbjct: 365 HEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDVLVATDVASKGLDFPDIQHVINYD 424
Query: 484 FPSSLEDYVHXXXXXXXXXXXXXXXXFFTHANAKYA-RELIKILQDAGQVVSPALS 538
P +E+YVH F ++ +L +LQ+A Q + P L+
Sbjct: 425 MPGEIENYVHRIGRTGRCGKTGIATTFINKNQSEITLLDLKHLLQEAKQRIPPVLA 480
>AT3G22310.1 | Symbols: PMH1 | PMH1 (PUTATIVE MITOCHONDRIAL RNA
HELICASE 1); ATP-dependent helicase |
chr3:7887389-7889813 FORWARD
Length = 610
Score = 216 bits (551), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 117/311 (37%), Positives = 189/311 (60%), Gaps = 9/311 (2%)
Query: 187 PIQAQGWPMALTGRDLIGIAETGSGKTLAYLLP---ALVHVNAQPRLVQGDGPIVLVLAP 243
PIQ A+ GRD+IG A TG+GKTLA+ +P ++ NA+ +G P LVLAP
Sbjct: 141 PIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHG--RGKNPQCLVLAP 198
Query: 244 TRELAVQIQQEAMKFGSRANIRITCIYGGAPKGPQIRDLQRGVEIVIATPGRLIDMLEAQ 303
TRELA Q+++E + S ++ C+YGG P G Q+R+L G+++ + TPGR+ID+++
Sbjct: 199 TRELARQVEKEFRE--SAPSLDTICLYGGTPIGQQMRELNYGIDVAVGTPGRIIDLMKRG 256
Query: 304 HTNLQRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPREVETLARQFLR 363
NL V ++VLDEAD+ML +GF + I+ ++ RQ++ +SAT P + +L +++L
Sbjct: 257 ALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQSMMFSATMPSWIRSLTKKYLN 316
Query: 364 NAYKV-IIGSPDLKANHCINQVVEVVTDIEKYNRLIKLLKEVMDGGRILIFMETKKGCDQ 422
N + ++G D K I + + + L+KE GG+ ++F +TK+ D+
Sbjct: 317 NPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIGPLVKEHGKGGKCIVFTQTKRDADR 376
Query: 423 VTRQLRMEGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKFVINY 482
+ L + + ++HGD +QA+R+ LA F+ G I+ ATDVAARGLDV ++ VI+Y
Sbjct: 377 LAFGL-AKSYKCEALHGDISQAQRERTLAGFRDGNFSILVATDVAARGLDVPNVDLVIHY 435
Query: 483 DFPSSLEDYVH 493
+ P++ E +VH
Sbjct: 436 ELPNNTETFVH 446
>AT3G22330.1 | Symbols: PMH2 | PMH2 (PUTATIVE MITOCHONDRIAL RNA
HELICASE 2); ATP-dependent helicase |
chr3:7892648-7895152 FORWARD
Length = 616
Score = 214 bits (546), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 116/311 (37%), Positives = 189/311 (60%), Gaps = 9/311 (2%)
Query: 187 PIQAQGWPMALTGRDLIGIAETGSGKTLAYLLP---ALVHVNAQPRLVQGDGPIVLVLAP 243
PIQ A+ GRD+IG A TG+GKTLA+ +P ++ NA+ +G P+ LVLAP
Sbjct: 129 PIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHG--RGRNPLCLVLAP 186
Query: 244 TRELAVQIQQEAMKFGSRANIRITCIYGGAPKGPQIRDLQRGVEIVIATPGRLIDMLEAQ 303
TRELA Q+++E + S ++ C+YGG P G Q+R L GV++ + TPGR+ID+++
Sbjct: 187 TRELARQVEKEFRE--SAPSLDTICLYGGTPIGQQMRQLDYGVDVAVGTPGRVIDLMKRG 244
Query: 304 HTNLQRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPREVETLARQFLR 363
NL V ++VLDEAD+ML +GF + I+ ++ RQ++ +SAT P + +L +++L
Sbjct: 245 ALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFSATMPSWIRSLTKKYLN 304
Query: 364 NAYKV-IIGSPDLKANHCINQVVEVVTDIEKYNRLIKLLKEVMDGGRILIFMETKKGCDQ 422
N V ++G D K I + + + + L+ E GG+ ++F +TK+ D+
Sbjct: 305 NPLTVDLVGDSDQKLADGITTYSIIADSYGRASIIGPLVTEHAKGGKCIVFTQTKRDADR 364
Query: 423 VTRQLRMEGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKFVINY 482
++ L + ++HGD +Q++R+ LA F+ G I+ ATDVAARGLDV ++ +I+Y
Sbjct: 365 LSYAL-ARSFKCEALHGDISQSQRERTLAGFRDGHFNILVATDVAARGLDVPNVDLIIHY 423
Query: 483 DFPSSLEDYVH 493
+ P++ E +VH
Sbjct: 424 ELPNNTETFVH 434
>AT3G02065.3 | Symbols: | DEAD/DEAH box helicase family protein |
chr3:359143-360741 FORWARD
Length = 505
Score = 213 bits (543), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 134/418 (32%), Positives = 210/418 (50%), Gaps = 12/418 (2%)
Query: 123 EKNFYIESPAVRAMSEQEVMQYRASRDITVQGQD--VPRPIRSFHEASFPGYCLEVFARL 180
++ FY+ P S + R DI VQGQ VP P+ +F P L
Sbjct: 72 DECFYVRDPG---SSSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETA 128
Query: 181 GFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLAYLLPALVHV---NAQPRLVQGDGPI 237
G+ PTPIQ Q P ALTG+ L+ A+TGSGKT ++L+P + +++ Q P+
Sbjct: 129 GYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPL 188
Query: 238 VLVLAPTRELAVQIQQEAMKFGSRANIRITCIYGGAPKGPQIRDLQRGVEIVIATPGRLI 297
+VLAPTREL VQ++ +A G + + GG P Q+ +Q+GVE++I TPGR++
Sbjct: 189 AMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGRVV 248
Query: 298 DMLEAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPREVETL 357
D+L L + VLDE D ML GF Q+ +I Q Q L +SAT REVE +
Sbjct: 249 DLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIF-QALSQPQVLLFSATISREVEKV 307
Query: 358 ARQFLRNAYKVIIGSPDLKANHCINQVVEVVTDIEKYNRLIKLLKEVMD-GGRILIFMET 416
+ V IG+P+ K N +NQ+ V +K +L +L+ ++++ +
Sbjct: 308 GGSLAKEIILVSIGNPN-KPNKAVNQLAIWVDAKQKKQKLFDILRSQNHFKPPAVVYVSS 366
Query: 417 KKGCDQVTRQLR-MEGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKD 475
+ G D + + + G ALSIHG+K ER V+ F G P++ +T V RG+D+
Sbjct: 367 RVGADLLANAITVVTGVKALSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDLLV 426
Query: 476 IKFVINYDFPSSLEDYVHXXXXXXXXXXXXXXXXFFTHANAKYARELIKILQDAGQVV 533
++ VI +D PS++++Y+H F + +L+ L+ +G +
Sbjct: 427 VRQVIVFDMPSTIKEYIHVIGRASRMGEKGTAIVFVNEDDRNLFPDLVAALKSSGAAI 484
>AT3G02065.2 | Symbols: | DEAD/DEAH box helicase family protein |
chr3:359143-360741 FORWARD
Length = 505
Score = 213 bits (543), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 134/418 (32%), Positives = 210/418 (50%), Gaps = 12/418 (2%)
Query: 123 EKNFYIESPAVRAMSEQEVMQYRASRDITVQGQD--VPRPIRSFHEASFPGYCLEVFARL 180
++ FY+ P S + R DI VQGQ VP P+ +F P L
Sbjct: 72 DECFYVRDPG---SSSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETA 128
Query: 181 GFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLAYLLPALVHV---NAQPRLVQGDGPI 237
G+ PTPIQ Q P ALTG+ L+ A+TGSGKT ++L+P + +++ Q P+
Sbjct: 129 GYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPL 188
Query: 238 VLVLAPTRELAVQIQQEAMKFGSRANIRITCIYGGAPKGPQIRDLQRGVEIVIATPGRLI 297
+VLAPTREL VQ++ +A G + + GG P Q+ +Q+GVE++I TPGR++
Sbjct: 189 AMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGRVV 248
Query: 298 DMLEAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPREVETL 357
D+L L + VLDE D ML GF Q+ +I Q Q L +SAT REVE +
Sbjct: 249 DLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIF-QALSQPQVLLFSATISREVEKV 307
Query: 358 ARQFLRNAYKVIIGSPDLKANHCINQVVEVVTDIEKYNRLIKLLKEVMD-GGRILIFMET 416
+ V IG+P+ K N +NQ+ V +K +L +L+ ++++ +
Sbjct: 308 GGSLAKEIILVSIGNPN-KPNKAVNQLAIWVDAKQKKQKLFDILRSQNHFKPPAVVYVSS 366
Query: 417 KKGCDQVTRQLR-MEGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKD 475
+ G D + + + G ALSIHG+K ER V+ F G P++ +T V RG+D+
Sbjct: 367 RVGADLLANAITVVTGVKALSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDLLV 426
Query: 476 IKFVINYDFPSSLEDYVHXXXXXXXXXXXXXXXXFFTHANAKYARELIKILQDAGQVV 533
++ VI +D PS++++Y+H F + +L+ L+ +G +
Sbjct: 427 VRQVIVFDMPSTIKEYIHVIGRASRMGEKGTAIVFVNEDDRNLFPDLVAALKSSGAAI 484
>AT5G26742.2 | Symbols: EMB1138 | EMB1138 (EMBRYO DEFECTIVE 1138);
ATP binding / ATP-dependent helicase |
chr5:9285543-9288874 REVERSE
Length = 748
Score = 209 bits (533), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 127/374 (33%), Positives = 194/374 (51%), Gaps = 9/374 (2%)
Query: 168 SFPGYCLEVFARLGFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLAYLLPALVHVNAQ 227
S P E + G PIQ AL GRD+I A+TG+GKTLA+ +P + + +
Sbjct: 108 SLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEE 167
Query: 228 PRLV-----QGDGPIVLVLAPTRELAVQIQQEAMKFGSRANIRITCIYGGAPKGPQIRDL 282
G P LVLAPTRELA Q+++E + S + C+YGG Q L
Sbjct: 168 AGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKE--SAPYLSTVCVYGGVSYTIQQSAL 225
Query: 283 QRGVEIVIATPGRLIDMLEAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 342
RGV++V+ TPGR+ID++E + L V YLVLDEAD+ML +GFE + I+ + RQ
Sbjct: 226 TRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQ 285
Query: 343 TLYWSATWPREVETLARQFLRNAYKV-IIGSPDLKANHCINQVVEVVTDIEKYNRLIKLL 401
++ +SAT P V+ LAR++L N + ++G D K I T K L L+
Sbjct: 286 SMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRTILSDLI 345
Query: 402 KEVMDGGRILIFMETKKGCDQVTRQLRMEGWPALSIHGDKNQAERDWVLAEFKSGRSPIM 461
GG+ ++F +TK+ D+V+ L ++HGD +Q +R+ L F+ G+ ++
Sbjct: 346 TVYAKGGKTIVFTQTKRDADEVSLALS-NSIATEALHGDISQHQRERTLNAFRQGKFTVL 404
Query: 462 TATDVAARGLDVKDIKFVINYDFPSSLEDYVHXXXXXXXXXXXXXXXXFFTHANAKYARE 521
ATDVA+RGLD+ ++ VI+Y+ P+ E +VH T + + R
Sbjct: 405 VATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRS 464
Query: 522 LIKILQDAGQVVSP 535
L + + + +SP
Sbjct: 465 LERDVGCHFEFISP 478
>AT5G26742.1 | Symbols: EMB1138 | EMB1138 (EMBRYO DEFECTIVE 1138);
ATP binding / ATP-dependent helicase |
chr5:9285543-9288874 REVERSE
Length = 747
Score = 209 bits (533), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 127/374 (33%), Positives = 194/374 (51%), Gaps = 9/374 (2%)
Query: 168 SFPGYCLEVFARLGFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLAYLLPALVHVNAQ 227
S P E + G PIQ AL GRD+I A+TG+GKTLA+ +P + + +
Sbjct: 108 SLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEE 167
Query: 228 PRLV-----QGDGPIVLVLAPTRELAVQIQQEAMKFGSRANIRITCIYGGAPKGPQIRDL 282
G P LVLAPTRELA Q+++E + S + C+YGG Q L
Sbjct: 168 AGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKE--SAPYLSTVCVYGGVSYTIQQSAL 225
Query: 283 QRGVEIVIATPGRLIDMLEAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 342
RGV++V+ TPGR+ID++E + L V YLVLDEAD+ML +GFE + I+ + RQ
Sbjct: 226 TRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQ 285
Query: 343 TLYWSATWPREVETLARQFLRNAYKV-IIGSPDLKANHCINQVVEVVTDIEKYNRLIKLL 401
++ +SAT P V+ LAR++L N + ++G D K I T K L L+
Sbjct: 286 SMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRTILSDLI 345
Query: 402 KEVMDGGRILIFMETKKGCDQVTRQLRMEGWPALSIHGDKNQAERDWVLAEFKSGRSPIM 461
GG+ ++F +TK+ D+V+ L ++HGD +Q +R+ L F+ G+ ++
Sbjct: 346 TVYAKGGKTIVFTQTKRDADEVSLALS-NSIATEALHGDISQHQRERTLNAFRQGKFTVL 404
Query: 462 TATDVAARGLDVKDIKFVINYDFPSSLEDYVHXXXXXXXXXXXXXXXXFFTHANAKYARE 521
ATDVA+RGLD+ ++ VI+Y+ P+ E +VH T + + R
Sbjct: 405 VATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRS 464
Query: 522 LIKILQDAGQVVSP 535
L + + + +SP
Sbjct: 465 LERDVGCHFEFISP 478
>AT3G09720.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr3:2980488-2983273 REVERSE
Length = 541
Score = 203 bits (517), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 134/414 (32%), Positives = 209/414 (50%), Gaps = 15/414 (3%)
Query: 124 KNFYIESPA--VRAMSEQEVMQYRASRDITVQGQDVPRPIRSFHEAS----FPGYCLEVF 177
KN +E+P + E++ + R I V G ++P P++SF E S GY L
Sbjct: 98 KNEIVENPKKELNRQMERDALS-RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNL 156
Query: 178 ARLGFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLAYLLPALVHVNAQPRLVQGDGPI 237
A LGF EPTPIQ Q P+ L+GR+ A TGSGKT A++ P L+ + +P DG
Sbjct: 157 AELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPMLIKLK-RP---STDGIR 212
Query: 238 VLVLAPTRELAVQIQQEAMKFGSRANIRITCIYGGAPKGPQIRDLQRGVEIVIATPGRLI 297
++L+P RELA Q +E K +N I + K L +++I+TP RL
Sbjct: 213 AVILSPARELAAQTAREGKKLIKGSNFHIRLMTKPLVKTADFSKLW--CDVLISTPMRLK 270
Query: 298 DMLEAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVSQI-RPDRQTLYWSATWPREVET 356
++A+ +L +V YLVLDE+D++ + QI +V P +SAT P VE
Sbjct: 271 RAIKAKKIDLSKVEYLVLDESDKLFEQSLLKQIDCVVKACSNPSIIRSLFSATLPDSVEE 330
Query: 357 LARQFLRNAYKVIIGSPDLKANHCINQVVEVVTDIEKYNRLIKLLKEVMDGGRILIFMET 416
LAR + +A +VIIG + + ++V ++ K L + E ++ +LIF+++
Sbjct: 331 LARSIMHDAVRVIIGRKNTASETVKQKLVFAGSEEGKLLALRQSFAESLNPP-VLIFVQS 389
Query: 417 KKGCDQVTRQLRMEGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDI 476
K+ ++ +L+ E A IH D ER+ + +F++G ++ ATDV ARG+D K I
Sbjct: 390 KERAKELYDELKCENIRAGVIHSDLPPGERENAVDQFRAGEKWVLIATDVIARGMDFKGI 449
Query: 477 KFVINYDFPSSLEDYVHXXXXXXXXXXXXXXXXFFTHANAKYARELIKILQDAG 530
VINYDFP S Y+H F+T + + R + + +G
Sbjct: 450 NCVINYDFPDSASAYIHRIGRSGRAGRSGEAITFYTEQDVPFLRNIANTMMSSG 503
>AT3G19760.1 | Symbols: | eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative | chr3:6863796-6866248 FORWARD
Length = 408
Score = 203 bits (516), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 117/344 (34%), Positives = 180/344 (52%), Gaps = 6/344 (1%)
Query: 150 ITVQGQDVPRPIRSFHEASFPGYCLEVFARLGFVEPTPIQAQGWPMALTGRDLIGIAETG 209
+ + D PI SF++ L GF +P+ IQ + L GRD+I A++G
Sbjct: 23 LVFETTDGIEPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSG 82
Query: 210 SGKTLAYLLPALVHVNAQPRLVQGDGPIVLVLAPTRELAVQIQQEAMKFGSRANIRITCI 269
+GKT L V+ R VQ L+L+PTRELA Q ++ G ANI+
Sbjct: 83 TGKTSMIALSVCQVVDTSSREVQA-----LILSPTRELATQTEKTIQAIGLHANIQAHAC 137
Query: 270 YGGAPKGPQIRDLQRGVEIVIATPGRLIDMLEAQHTNLQRVTYLVLDEADRMLDMGFEPQ 329
GG G IR L+ GV +V TPGR+ DM++ + + + L+LDE+D ML GF+ Q
Sbjct: 138 IGGNSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSRGFKDQ 197
Query: 330 IRKIVSQIRPDRQTLYWSATWPREVETLARQFLRNAYKVIIGSPDLKANHCINQVVEVVT 389
I + + PD Q SAT P E+ + +F+ K+++ +L V V
Sbjct: 198 IYDVYRYLPPDLQVCLVSATLPHEILEMTSKFMTEPVKILVKRDELTLEGIKQFFVAVEK 257
Query: 390 DIEKYNRLIKLLKEVMDGGRILIFMETKKGCDQVTRQLRMEGWPALSIHGDKNQAERDWV 449
+ K++ L L + + + +IF TK+ D ++ ++R + S+HGD Q ERD +
Sbjct: 258 EEWKFDTLCDLY-DTLTITQAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAI 316
Query: 450 LAEFKSGRSPIMTATDVAARGLDVKDIKFVINYDFPSSLEDYVH 493
+ EF+SG S ++ TDV ARG+DV+ + VINYD P++ E Y+H
Sbjct: 317 MNEFRSGDSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIH 360
>AT5G60990.1 | Symbols: | DEAD/DEAH box helicase, putative (RH10) |
chr5:24563827-24566374 REVERSE
Length = 456
Score = 195 bits (496), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 121/341 (35%), Positives = 190/341 (55%), Gaps = 10/341 (2%)
Query: 161 IRSFHEASFPGYCLEVFARLGFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLAYLLPA 220
+++F E ++ RLG+ P+ IQA+ P AL G+D+IG+A+TGSGKT A+ +P
Sbjct: 8 VKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPI 67
Query: 221 LVHV-----NAQPRLVQGDGP--IVLVLAPTRELAVQIQQEAMKFGSRANIRITCIYGGA 273
L + +++P+ + P VL+PTRELA+QI ++ G+ ++R + GG
Sbjct: 68 LQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGI 127
Query: 274 PKGPQIRDLQRGVEIVIATPGRLID-MLEAQHTNLQRVTYLVLDEADRMLDMGFEPQIRK 332
+ Q L + +++ATPGRL D M + + +L+ + YLVLDEADR+L+ FE + +
Sbjct: 128 DRMQQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQ 187
Query: 333 IVSQIRPDRQTLYWSATWPREVETLARQFLRNAYKVIIGSPDLKANHCINQVVEVVTDIE 392
I+ +I +R+T +SAT ++V L R LRN K+ S + Q V
Sbjct: 188 ILEEIPLERKTFLFSATMTKKVRKLQRACLRNPVKIEAASK-YSTVDTLKQQYRFVAAKY 246
Query: 393 KYNRLIKLLKEVMDGGRILIFMETKKGCDQVTRQLRMEGWPALSIHGDKNQAERDWVLAE 452
K L+ +L E M +IF T G + LR G+ A+ I G Q++R L +
Sbjct: 247 KDCYLVYILSE-MPESTSMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNK 305
Query: 453 FKSGRSPIMTATDVAARGLDVKDIKFVINYDFPSSLEDYVH 493
FK+G I+ TDVA+RGLD+ + VINYD P++ +DY+H
Sbjct: 306 FKAGECNILVCTDVASRGLDIPSVDVVINYDIPTNSKDYIH 346
>AT5G62190.1 | Symbols: PRH75 | PRH75 (plant RNA helicase 75);
ATP-dependent helicase | chr5:24997768-25001105 REVERSE
Length = 671
Score = 195 bits (495), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 118/317 (37%), Positives = 182/317 (57%), Gaps = 15/317 (4%)
Query: 187 PIQAQGWPMALTGRDLIGIAETGSGKTLAYLLPALVHVNAQP-----RLVQGDGPIVLVL 241
PIQA + M L G DL+G A TG GKTLA++LP L + P ++ G P VLVL
Sbjct: 121 PIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVL 180
Query: 242 APTRELAVQIQQEAMKFGSRANIRITCIYGGAPKGPQIRDLQRGVEIVIATPGRLIDMLE 301
PTRELA Q+ + +G + C+YGG Q L+RGV+IV+ TPGR+ D +E
Sbjct: 181 LPTRELAKQVAADFDAYGGSLGLSSCCLYGGDSYPVQEGKLKRGVDIVVGTPGRIKDHIE 240
Query: 302 AQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDR--QTLYWSATWPREVETLAR 359
Q+ + + + VLDEAD ML MGF + I+ ++ QTL +SAT P V+ ++
Sbjct: 241 RQNLDFSYLQFRVLDEADEMLRMGFVEDVELILGKVEDSTKVQTLLFSATLPSWVKNISN 300
Query: 360 QFLRNAYKVI--IGSPDLKANHCINQVVEVVTDIEKYNRLI-KLLKEVMDGGRILIFMET 416
+FL+ K I +G+ +KA++ + + + + RLI ++ GG+ +IF ET
Sbjct: 301 RFLKRDQKTIDLVGNDKMKASNSVRHIA-IPCNKAAMARLIPDIISCYSSGGQTIIFAET 359
Query: 417 KKGCDQVTRQLRMEGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDI 476
K +++ L +G AL HG+ Q++R+ LA F++G+ + AT+VAARGLD+ D+
Sbjct: 360 KVQVSELSGLL--DGSRAL--HGEIPQSQREVTLAGFRNGKFATLVATNVAARGLDINDV 415
Query: 477 KFVINYDFPSSLEDYVH 493
+ +I + P +E Y+H
Sbjct: 416 QLIIQCEPPREVEAYIH 432
>AT1G51380.1 | Symbols: | eukaryotic translation initiation factor
4A, putative / eIF-4A, putative | chr1:19051628-19053635
FORWARD
Length = 392
Score = 194 bits (493), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 113/335 (33%), Positives = 180/335 (53%), Gaps = 6/335 (1%)
Query: 159 RPIRSFHEASFPGYCLEVFARLGFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLAYLL 218
+PI+SF + L G+ +P+ IQ + L GRD+I A++G+GKT +
Sbjct: 19 KPIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAI 78
Query: 219 PALVHVNAQPRLVQGDGPIVLVLAPTRELAVQIQQEAMKFGSRANIRITCIYGGAPKGPQ 278
VN R VQ VLVL+P+RELA Q ++ G+ NI+ GG G
Sbjct: 79 SVCQIVNISSRKVQ-----VLVLSPSRELASQTEKTIQAIGAHTNIQAHACIGGKSIGED 133
Query: 279 IRDLQRGVEIVIATPGRLIDMLEAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVSQIR 338
I+ L+RGV V TPGR+ DM++ + V LVLDE+D ML G + QI + +
Sbjct: 134 IKKLERGVHAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALP 193
Query: 339 PDRQTLYWSATWPREVETLARQFLRNAYKVIIGSPDLKANHCINQVVEVVTDIEKYNRLI 398
D Q SAT P+E+ + +F+ + ++++ +L V+V + K++ L
Sbjct: 194 HDIQVCLISATLPQEILEMTEKFMTDPVRILVKPDELTLEGIKQYYVDVDKEEWKFDTLC 253
Query: 399 KLLKEVMDGGRILIFMETKKGCDQVTRQLRMEGWPALSIHGDKNQAERDWVLAEFKSGRS 458
L + + +IF T++ D +T ++R + S+HGDK Q ERD ++ +F+S +S
Sbjct: 254 DLYGR-LTINQAIIFCNTRQKVDWLTEKMRSSNFIVSSMHGDKRQKERDDIMNQFRSFKS 312
Query: 459 PIMTATDVAARGLDVKDIKFVINYDFPSSLEDYVH 493
++ A+DV ARG+DV+ + VINYD P++ E Y+H
Sbjct: 313 RVLIASDVWARGIDVQTVSHVINYDIPNNPELYIH 347
>AT1G16280.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr1:5568476-5570481 REVERSE
Length = 491
Score = 193 bits (491), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 121/336 (36%), Positives = 173/336 (51%), Gaps = 11/336 (3%)
Query: 163 SFHEASFPGYCLEVFARLGFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLAYLLPALV 222
+F + +E LG +PTP+Q P L GRD++G+A+TGSGKT A+ LP L
Sbjct: 59 NFEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILH 118
Query: 223 HVNAQPRLVQGDGPIVLVLAPTRELAVQIQQEAMKFGSRANIRITCIYGGAPKGPQIRDL 282
+ P G LV+ PTRELA Q+ ++ GS N+R + I GG Q L
Sbjct: 119 RLAEDPY-----GVFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSL 173
Query: 283 QRGVEIVIATPGRLIDMLEAQHTN---LQRVTYLVLDEADRMLDMGFEPQIRKIVSQIRP 339
IVI TPGR+ +LE R +LVLDEADR+LD+GF+ ++R I +
Sbjct: 174 VSRPHIVITTPGRIKVLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCLPK 233
Query: 340 DRQTLYWSATWPREVETLARQFLRNAYKVIIGSPDLKANHCINQVVEVVTDIEKYNRLIK 399
RQTL +SAT ++ L AY LK + Q K L+
Sbjct: 234 SRQTLLFSATMTSNLQALLEHSSNKAY-FYEAYEGLKTVDTLTQQFIFEDKDAKELYLVH 292
Query: 400 LLKEVMDGG--RILIFMETKKGCDQVTRQLRMEGWPALSIHGDKNQAERDWVLAEFKSGR 457
+L ++ D G +IF+ T + C +++ L +++H +Q+ R L++FKSG+
Sbjct: 293 ILSQMEDKGIRSAMIFVSTCRTCQRLSLMLDELEVENIAMHSLNSQSMRLSALSKFKSGK 352
Query: 458 SPIMTATDVAARGLDVKDIKFVINYDFPSSLEDYVH 493
PI+ ATDVA+RGLD+ + VINYD P DYVH
Sbjct: 353 VPILLATDVASRGLDIPTVDLVINYDIPRDPRDYVH 388
>AT1G77050.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr1:28954789-28956420 REVERSE
Length = 513
Score = 189 bits (481), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 112/320 (35%), Positives = 180/320 (56%), Gaps = 16/320 (5%)
Query: 181 GFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLAYLLPALVHVNAQPRLVQGDGPIVLV 240
G+ PTPIQ + P+ L+G D++ +A TGSGKT A+L+P L + V G L+
Sbjct: 47 GYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEKLKQH---VPQGGVRALI 103
Query: 241 LAPTRELAVQIQQEAMKFGSRANIRITCIYGGAPKGPQIRDLQRGVEIVIATPGRLIDML 300
L+PTR+LA Q + + G ++R++ + GG Q +L +G +++IATPGRL+ +L
Sbjct: 104 LSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEELTKGPDVIIATPGRLMHLL 163
Query: 301 -EAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPREVETLAR 359
E L+ V Y+V DEAD + MGF Q+ +I++Q+ +RQTL +SAT P + A+
Sbjct: 164 SEVDDMTLRTVEYVVFDEADSLFGMGFAEQLHQILTQLSENRQTLLFSATLPSALAEFAK 223
Query: 360 QFLRNAYKVIIG-----SPDLKANHCINQVVEVVTDIEKYNRLIKLLKE-VMDGGRILIF 413
LR V + SPDLK + V EKY+ L+ L++E + + LIF
Sbjct: 224 AGLREPQLVRLDVENKISPDLKLSFL------TVRPEEKYSALLYLVREHISSDQQTLIF 277
Query: 414 METKKGCDQVTRQLRMEGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDV 473
+ TK + V ++E +GD +Q R ++ F++ ++ ++ TD+AARG+D+
Sbjct: 278 VSTKHHVEFVNSLFKLENIEPSVCYGDMDQDARKIHVSRFRARKTMLLIVTDIAARGIDI 337
Query: 474 KDIKFVINYDFPSSLEDYVH 493
+ VIN+DFP + +VH
Sbjct: 338 PLLDNVINWDFPPRPKIFVH 357
>AT3G02065.1 | Symbols: | DEAD/DEAH box helicase family protein |
chr3:359635-360741 FORWARD
Length = 368
Score = 182 bits (463), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 111/348 (31%), Positives = 180/348 (51%), Gaps = 7/348 (2%)
Query: 191 QGWPMALTGRDLIGIAETGSGKTLAYLLPALVHV---NAQPRLVQGDGPIVLVLAPTREL 247
Q P ALTG+ L+ A+TGSGKT ++L+P + +++ Q P+ +VLAPTREL
Sbjct: 2 QAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTREL 61
Query: 248 AVQIQQEAMKFGSRANIRITCIYGGAPKGPQIRDLQRGVEIVIATPGRLIDMLEAQHTNL 307
VQ++ +A G + + GG P Q+ +Q+GVE++I TPGR++D+L L
Sbjct: 62 CVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGRVVDLLSKHTIEL 121
Query: 308 QRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPREVETLARQFLRNAYK 367
+ VLDE D ML GF Q+ +I Q Q L +SAT REVE + +
Sbjct: 122 DNIMTFVLDEVDCMLQRGFRDQVMQIF-QALSQPQVLLFSATISREVEKVGGSLAKEIIL 180
Query: 368 VIIGSPDLKANHCINQVVEVVTDIEKYNRLIKLLKEVMDGG-RILIFMETKKGCDQVTRQ 426
V IG+P+ K N +NQ+ V +K +L +L+ ++++ ++ G D +
Sbjct: 181 VSIGNPN-KPNKAVNQLAIWVDAKQKKQKLFDILRSQNHFKPPAVVYVSSRVGADLLANA 239
Query: 427 LR-MEGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKFVINYDFP 485
+ + G ALSIHG+K ER V+ F G P++ +T V RG+D+ ++ VI +D P
Sbjct: 240 ITVVTGVKALSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMP 299
Query: 486 SSLEDYVHXXXXXXXXXXXXXXXXFFTHANAKYARELIKILQDAGQVV 533
S++++Y+H F + +L+ L+ +G +
Sbjct: 300 STIKEYIHVIGRASRMGEKGTAIVFVNEDDRNLFPDLVAALKSSGAAI 347
>AT4G00660.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr4:274638-277438 FORWARD
Length = 505
Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 98/313 (31%), Positives = 166/313 (53%), Gaps = 8/313 (2%)
Query: 181 GFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLAYLLPALVHVNAQPRLVQGDGPIVLV 240
GF P+PIQ + P+ALTGRD++ A+ G+GKT A+ +P L ++ ++Q ++
Sbjct: 150 GFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQA-----VI 204
Query: 241 LAPTRELAVQIQQEAMKFGSRANIRITCIYGGAPKGPQIRDLQRGVEIVIATPGRLIDML 300
+ PTRELA+Q Q + G I++ GG I L + V +++ TPGR++D+
Sbjct: 205 IVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLT 264
Query: 301 EAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPREVETLARQ 360
+ L+ + LV+DEAD++L F+P + ++S + RQ L +SAT+P V+ +
Sbjct: 265 KKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFSATFPVTVKDFKDR 324
Query: 361 FLRNAYKVIIGSPDLKANHCINQVVEVVTDIEKYNRLIKLLKEVMDGGRILIFMETKKGC 420
FL N Y +I D I Q V + +K + L L ++ I IF +
Sbjct: 325 FLTNPY--VINLMDELTLKGITQFYAFVEERQKIHCLNTLFSKLQINQSI-IFCNSVNRV 381
Query: 421 DQVTRQLRMEGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKFVI 480
+ + +++ G+ IH Q R+ V +F++G + TD+ RG+D++ + VI
Sbjct: 382 ELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVI 441
Query: 481 NYDFPSSLEDYVH 493
N+DFP + E Y+H
Sbjct: 442 NFDFPKNAETYLH 454
>AT4G00660.2 | Symbols: | DEAD/DEAH box helicase, putative |
chr4:274638-277438 FORWARD
Length = 505
Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 98/313 (31%), Positives = 166/313 (53%), Gaps = 8/313 (2%)
Query: 181 GFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLAYLLPALVHVNAQPRLVQGDGPIVLV 240
GF P+PIQ + P+ALTGRD++ A+ G+GKT A+ +P L ++ ++Q ++
Sbjct: 150 GFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQA-----VI 204
Query: 241 LAPTRELAVQIQQEAMKFGSRANIRITCIYGGAPKGPQIRDLQRGVEIVIATPGRLIDML 300
+ PTRELA+Q Q + G I++ GG I L + V +++ TPGR++D+
Sbjct: 205 IVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLT 264
Query: 301 EAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPREVETLARQ 360
+ L+ + LV+DEAD++L F+P + ++S + RQ L +SAT+P V+ +
Sbjct: 265 KKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFSATFPVTVKDFKDR 324
Query: 361 FLRNAYKVIIGSPDLKANHCINQVVEVVTDIEKYNRLIKLLKEVMDGGRILIFMETKKGC 420
FL N Y +I D I Q V + +K + L L ++ I IF +
Sbjct: 325 FLTNPY--VINLMDELTLKGITQFYAFVEERQKIHCLNTLFSKLQINQSI-IFCNSVNRV 381
Query: 421 DQVTRQLRMEGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKFVI 480
+ + +++ G+ IH Q R+ V +F++G + TD+ RG+D++ + VI
Sbjct: 382 ELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVI 441
Query: 481 NYDFPSSLEDYVH 493
N+DFP + E Y+H
Sbjct: 442 NFDFPKNAETYLH 454
>AT4G16630.1 | Symbols: | DEAD/DEAH box helicase, putative (RH28) |
chr4:9362198-9366471 REVERSE
Length = 789
Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 124/367 (33%), Positives = 180/367 (49%), Gaps = 10/367 (2%)
Query: 163 SFHEASFPGYCLEVFARLGFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLAYLLPALV 222
+F E + L LG+ +PTPIQA P+ALTGRDL A TGSGKT A+ LP L
Sbjct: 168 TFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLE 227
Query: 223 HVNAQPRLVQGDGPIVLVLAPTRELAVQIQQEAMKFGSRANIRITCIYGGAPKGPQIRDL 282
+ +P+ V VL+L PTRELAVQI +I+ I GG Q L
Sbjct: 228 RLLFRPKRVFATR--VLILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVL 285
Query: 283 QRGVEIVIATPGRLIDMLE-AQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDR 341
+ +IV+ATPGR+ID L + +L + L+LDEADR+L GF +I ++V R
Sbjct: 286 RSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRR 345
Query: 342 QTLYWSATWPREVETLARQFLRNAYKVIIGSPDLKANHCINQVVEVVTDIEKYNR--LIK 399
QT+ +SAT EV+ L + L ++ + +VV + E L+
Sbjct: 346 QTMLFSATMTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEAVLLS 405
Query: 400 LLKEVMDGGRILIFMETKKGCDQVTRQLRMEGWPALSIHGDKNQAERDWVLAEFKSGRSP 459
L +++IF TK+ ++ + G A +HG+ QA+R L F+
Sbjct: 406 LCTRTF-KSKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEVD 464
Query: 460 IMTATDVAARGLDVKDIKFVINYDFPSSLEDYVHXXXXXXXXXXXXXXXXFFTHANAKYA 519
+ ATDVAARGLD+ ++ VINY P ++ YVH F T ++
Sbjct: 465 FLIATDVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSD---- 520
Query: 520 RELIKIL 526
R L+K++
Sbjct: 521 RSLLKVI 527
>AT3G13920.2 | Symbols: RH4, TIF4A1, EIF4A1 | EIF4A1 (eukaryotic
translation initiation factor 4A-1); ATP-dependent
helicase | chr3:4592593-4594135 REVERSE
Length = 415
Score = 177 bits (448), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 107/313 (34%), Positives = 164/313 (52%), Gaps = 6/313 (1%)
Query: 181 GFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLAYLLPALVHVNAQPRLVQGDGPIVLV 240
GF +P+ IQ +G G D+I A++G+GKT + L ++ L+Q LV
Sbjct: 58 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDFS--LIQCQA---LV 112
Query: 241 LAPTRELAVQIQQEAMKFGSRANIRITCIYGGAPKGPQIRDLQRGVEIVIATPGRLIDML 300
LAPTRELA QI++ G +++ GG R LQ GV +V+ TPGR+ DML
Sbjct: 113 LAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDML 172
Query: 301 EAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPREVETLARQ 360
+ Q + VLDEAD ML GF+ QI I + P Q +SAT P E + R+
Sbjct: 173 KRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRK 232
Query: 361 FLRNAYKVIIGSPDLKANHCINQVVEVVTDIEKYNRLIKLLKEVMDGGRILIFMETKKGC 420
F+ ++++ +L V V + K L L E + + +IF+ T++
Sbjct: 233 FMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLY-ETLAITQSVIFVNTRRKV 291
Query: 421 DQVTRQLRMEGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKFVI 480
D +T ++R + HGD +Q RD ++ EF+SG S ++ TD+ ARG+DV+ + VI
Sbjct: 292 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 351
Query: 481 NYDFPSSLEDYVH 493
N+D P+ E+Y+H
Sbjct: 352 NFDLPTQPENYLH 364
>AT3G13920.1 | Symbols: RH4, TIF4A1, EIF4A1 | EIF4A1 (eukaryotic
translation initiation factor 4A-1); ATP-dependent
helicase | chr3:4592642-4594135 REVERSE
Length = 412
Score = 177 bits (448), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 107/313 (34%), Positives = 164/313 (52%), Gaps = 6/313 (1%)
Query: 181 GFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLAYLLPALVHVNAQPRLVQGDGPIVLV 240
GF +P+ IQ +G G D+I A++G+GKT + L ++ L+Q LV
Sbjct: 58 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDFS--LIQCQA---LV 112
Query: 241 LAPTRELAVQIQQEAMKFGSRANIRITCIYGGAPKGPQIRDLQRGVEIVIATPGRLIDML 300
LAPTRELA QI++ G +++ GG R LQ GV +V+ TPGR+ DML
Sbjct: 113 LAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDML 172
Query: 301 EAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPREVETLARQ 360
+ Q + VLDEAD ML GF+ QI I + P Q +SAT P E + R+
Sbjct: 173 KRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRK 232
Query: 361 FLRNAYKVIIGSPDLKANHCINQVVEVVTDIEKYNRLIKLLKEVMDGGRILIFMETKKGC 420
F+ ++++ +L V V + K L L E + + +IF+ T++
Sbjct: 233 FMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLY-ETLAITQSVIFVNTRRKV 291
Query: 421 DQVTRQLRMEGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKFVI 480
D +T ++R + HGD +Q RD ++ EF+SG S ++ TD+ ARG+DV+ + VI
Sbjct: 292 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 351
Query: 481 NYDFPSSLEDYVH 493
N+D P+ E+Y+H
Sbjct: 352 NFDLPTQPENYLH 364
>AT3G13920.3 | Symbols: RH4, TIF4A1, EIF4A1 | EIF4A1 (eukaryotic
translation initiation factor 4A-1) |
chr3:4592642-4594101 REVERSE
Length = 402
Score = 177 bits (448), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 107/313 (34%), Positives = 164/313 (52%), Gaps = 6/313 (1%)
Query: 181 GFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLAYLLPALVHVNAQPRLVQGDGPIVLV 240
GF +P+ IQ +G G D+I A++G+GKT + L ++ L+Q LV
Sbjct: 48 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDFS--LIQCQA---LV 102
Query: 241 LAPTRELAVQIQQEAMKFGSRANIRITCIYGGAPKGPQIRDLQRGVEIVIATPGRLIDML 300
LAPTRELA QI++ G +++ GG R LQ GV +V+ TPGR+ DML
Sbjct: 103 LAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDML 162
Query: 301 EAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPREVETLARQ 360
+ Q + VLDEAD ML GF+ QI I + P Q +SAT P E + R+
Sbjct: 163 KRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRK 222
Query: 361 FLRNAYKVIIGSPDLKANHCINQVVEVVTDIEKYNRLIKLLKEVMDGGRILIFMETKKGC 420
F+ ++++ +L V V + K L L E + + +IF+ T++
Sbjct: 223 FMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLY-ETLAITQSVIFVNTRRKV 281
Query: 421 DQVTRQLRMEGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKFVI 480
D +T ++R + HGD +Q RD ++ EF+SG S ++ TD+ ARG+DV+ + VI
Sbjct: 282 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 341
Query: 481 NYDFPSSLEDYVH 493
N+D P+ E+Y+H
Sbjct: 342 NFDLPTQPENYLH 354
>AT5G65900.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr5:26375554-26378470 FORWARD
Length = 633
Score = 176 bits (446), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 116/343 (33%), Positives = 181/343 (52%), Gaps = 21/343 (6%)
Query: 162 RSFHEASFPGYCLEVFARLGFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLAYLLPA- 220
++F S + +GF T IQA+ P + G D++G A TGSGKTLA+L+PA
Sbjct: 154 KTFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAV 213
Query: 221 --LVHVNAQPRLVQGDGPIVLVLAPTRELAVQ---IQQEAMKFGSRANIRITCIYGGAPK 275
L V PR +G VLV+ PTRELA+Q + +E +K+ S+ + + GG +
Sbjct: 214 ELLYRVKFTPR----NGTGVLVICPTRELAIQSYGVAKELLKYHSQT---VGKVIGGEKR 266
Query: 276 GPQIRDLQRGVEIVIATPGRLIDMLEAQHTN---LQRVTYLVLDEADRMLDMGFEPQIRK 332
+ L +GV +++ATPGRL+D LE +TN + + +LV+DEADR+L+ FE ++K
Sbjct: 267 KTEAEILAKGVNLLVATPGRLLDHLE--NTNGFIFKNLKFLVMDEADRILEQNFEEDLKK 324
Query: 333 IVSQIRPDRQTLYWSATWPREVETLARQFLRNAYKVII--GSPDLKANHCINQVVEVVTD 390
I++ + RQT +SAT +VE LAR L + + + G ++ N + Q VV
Sbjct: 325 ILNLLPKTRQTSLFSATQSAKVEDLARVSLTSPVYIDVDEGRKEV-TNEGLEQGYCVVPS 383
Query: 391 IEKYNRLIKLLKEVMDGGRILIFMETKKGCDQVTRQLRMEGWPALSIHGDKNQAERDWVL 450
+ L+ LK +I++F T K R + L I G +Q +R
Sbjct: 384 AMRLLFLLTFLKRFQGKKKIMVFFSTCKSTKFHAELFRYIKFDCLEIRGGIDQNKRTPTF 443
Query: 451 AEFKSGRSPIMTATDVAARGLDVKDIKFVINYDFPSSLEDYVH 493
+F + I+ T+VAARGLD + +++ YD P + DY+H
Sbjct: 444 LQFIKAETGILLCTNVAARGLDFPHVDWIVQYDPPDNPTDYIH 486
>AT1G54270.1 | Symbols: EIF4A-2 | EIF4A-2 (eukaryotic translation
initiation factor 4A-2); ATP-dependent helicase |
chr1:20264162-20265685 FORWARD
Length = 412
Score = 174 bits (441), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 106/313 (33%), Positives = 161/313 (51%), Gaps = 6/313 (1%)
Query: 181 GFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLAYLLPALVHVNAQPRLVQGDGPIVLV 240
GF +P+ IQ +G G D+I A++G+GKT + L ++ Q LV
Sbjct: 58 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYALLQCQA-----LV 112
Query: 241 LAPTRELAVQIQQEAMKFGSRANIRITCIYGGAPKGPQIRDLQRGVEIVIATPGRLIDML 300
LAPTRELA QI++ G +++ GG R LQ GV +V+ TPGR+ DML
Sbjct: 113 LAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDML 172
Query: 301 EAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPREVETLARQ 360
Q + VLDEAD ML GF+ QI I + P Q +SAT P E + R+
Sbjct: 173 RRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRK 232
Query: 361 FLRNAYKVIIGSPDLKANHCINQVVEVVTDIEKYNRLIKLLKEVMDGGRILIFMETKKGC 420
F+ ++++ +L V V + K L L E + + +IF+ T++
Sbjct: 233 FMSKPVRILVKRDELTLEGIKQFYVNVEKEDWKLETLCDLY-ETLAITQSVIFVNTRRKV 291
Query: 421 DQVTRQLRMEGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKFVI 480
D +T ++R + HGD +Q RD ++ EF+SG S ++ TD+ ARG+DV+ + VI
Sbjct: 292 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 351
Query: 481 NYDFPSSLEDYVH 493
N+D P+ E+Y+H
Sbjct: 352 NFDLPTQPENYLH 364
>AT3G61240.2 | Symbols: | DEAD/DEAH box helicase, putative (RH12) |
chr3:22677565-22680129 FORWARD
Length = 498
Score = 172 bits (436), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 96/313 (30%), Positives = 165/313 (52%), Gaps = 8/313 (2%)
Query: 181 GFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLAYLLPALVHVNAQPRLVQGDGPIVLV 240
GF +P+PIQ + P+ALTG D++ A+ G+GKT A+ +P L ++ ++Q ++
Sbjct: 143 GFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQA-----MI 197
Query: 241 LAPTRELAVQIQQEAMKFGSRANIRITCIYGGAPKGPQIRDLQRGVEIVIATPGRLIDML 300
L PTRELA+Q Q + NI++ GG I L + V +++ TPGR++D+
Sbjct: 198 LVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRILDLT 257
Query: 301 EAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPREVETLARQ 360
+ L+ LV+DEAD++L F+P + +++ + +RQ L +SAT+P V+ +
Sbjct: 258 KKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSATFPVTVKAFKDR 317
Query: 361 FLRNAYKVIIGSPDLKANHCINQVVEVVTDIEKYNRLIKLLKEVMDGGRILIFMETKKGC 420
LR Y +I D + Q V + +K + L L ++ I IF +
Sbjct: 318 HLRKPY--VINLMDQLTLMGVTQYYAFVEERQKVHCLNTLFSKLQINQSI-IFCNSVNRV 374
Query: 421 DQVTRQLRMEGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKFVI 480
+ + +++ G+ IH Q R+ V EF++G + TD+ RG+D++ + VI
Sbjct: 375 ELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRGIDIQAVNVVI 434
Query: 481 NYDFPSSLEDYVH 493
N+DFP + E Y+H
Sbjct: 435 NFDFPRTSESYLH 447
>AT3G61240.1 | Symbols: | DEAD/DEAH box helicase, putative (RH12) |
chr3:22677565-22680129 FORWARD
Length = 498
Score = 172 bits (436), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 96/313 (30%), Positives = 165/313 (52%), Gaps = 8/313 (2%)
Query: 181 GFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLAYLLPALVHVNAQPRLVQGDGPIVLV 240
GF +P+PIQ + P+ALTG D++ A+ G+GKT A+ +P L ++ ++Q ++
Sbjct: 143 GFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQA-----MI 197
Query: 241 LAPTRELAVQIQQEAMKFGSRANIRITCIYGGAPKGPQIRDLQRGVEIVIATPGRLIDML 300
L PTRELA+Q Q + NI++ GG I L + V +++ TPGR++D+
Sbjct: 198 LVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRILDLT 257
Query: 301 EAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPREVETLARQ 360
+ L+ LV+DEAD++L F+P + +++ + +RQ L +SAT+P V+ +
Sbjct: 258 KKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSATFPVTVKAFKDR 317
Query: 361 FLRNAYKVIIGSPDLKANHCINQVVEVVTDIEKYNRLIKLLKEVMDGGRILIFMETKKGC 420
LR Y +I D + Q V + +K + L L ++ I IF +
Sbjct: 318 HLRKPY--VINLMDQLTLMGVTQYYAFVEERQKVHCLNTLFSKLQINQSI-IFCNSVNRV 374
Query: 421 DQVTRQLRMEGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKFVI 480
+ + +++ G+ IH Q R+ V EF++G + TD+ RG+D++ + VI
Sbjct: 375 ELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRGIDIQAVNVVI 434
Query: 481 NYDFPSSLEDYVH 493
N+DFP + E Y+H
Sbjct: 435 NFDFPRTSESYLH 447
>AT1G72730.1 | Symbols: | eukaryotic translation initiation factor
4A, putative / eIF-4A, putative | chr1:27381702-27383255
REVERSE
Length = 414
Score = 171 bits (434), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 106/313 (33%), Positives = 161/313 (51%), Gaps = 6/313 (1%)
Query: 181 GFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLAYLLPALVHVNAQPRLVQGDGPIVLV 240
GF +P+ IQ +G G D+I A++G+GKT + L ++ LVQ LV
Sbjct: 60 GFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDIS--LVQCQA---LV 114
Query: 241 LAPTRELAVQIQQEAMKFGSRANIRITCIYGGAPKGPQIRDLQRGVEIVIATPGRLIDML 300
LAPTRELA QI++ G ++ GG R LQ GV +V+ TPGR+ D+L
Sbjct: 115 LAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQSGVHVVVGTPGRVFDLL 174
Query: 301 EAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPREVETLARQ 360
Q + VLDEAD ML GF+ QI I + Q +SAT P E + R+
Sbjct: 175 RRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITRK 234
Query: 361 FLRNAYKVIIGSPDLKANHCINQVVEVVTDIEKYNRLIKLLKEVMDGGRILIFMETKKGC 420
F+ ++++ +L V V + K L L E + + +IF+ T++
Sbjct: 235 FMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLY-ETLAITQSVIFVNTRRKV 293
Query: 421 DQVTRQLRMEGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKFVI 480
D +T ++R + HGD +Q RD ++ EF+SG S ++ TD+ ARG+DV+ + VI
Sbjct: 294 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 353
Query: 481 NYDFPSSLEDYVH 493
N+D P+ E+Y+H
Sbjct: 354 NFDLPTQPENYLH 366
>AT2G45810.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr2:18866910-18869392 FORWARD
Length = 528
Score = 171 bits (432), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 166/313 (53%), Gaps = 8/313 (2%)
Query: 181 GFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLAYLLPALVHVNAQPRLVQGDGPIVLV 240
GF +P+PIQ + P+ALTG D++ A+ G+GKT A+ +P L ++ + ++Q ++
Sbjct: 173 GFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQA-----VI 227
Query: 241 LAPTRELAVQIQQEAMKFGSRANIRITCIYGGAPKGPQIRDLQRGVEIVIATPGRLIDML 300
L PTRELA+Q Q + I + GG I L + V +++ TPGR++D+
Sbjct: 228 LVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRLYQPVHLLVGTPGRILDLA 287
Query: 301 EAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPREVETLARQ 360
+ L+ LV+DEAD++L + F+P I +++ + RQ L +SAT+P V++ +
Sbjct: 288 KKGVCVLKDCAMLVMDEADKLLSVEFQPSIEELIQFLPESRQILMFSATFPVTVKSFKDR 347
Query: 361 FLRNAYKVIIGSPDLKANHCINQVVEVVTDIEKYNRLIKLLKEVMDGGRILIFMETKKGC 420
+L+ Y II D + Q V + +K + L L ++ I IF +
Sbjct: 348 YLKKPY--IINLMDQLTLMGVTQYYAFVEERQKVHCLNTLFSKLQINQSI-IFCNSVNRV 404
Query: 421 DQVTRQLRMEGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKFVI 480
+ + +++ G+ IH Q R+ V +F++G + TD+ RG+D++ + VI
Sbjct: 405 ELLAKKITELGYSCFYIHAKMVQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVI 464
Query: 481 NYDFPSSLEDYVH 493
N+DFP + E Y+H
Sbjct: 465 NFDFPRTSESYLH 477
>AT1G71370.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr1:26900897-26903043 REVERSE
Length = 558
Score = 167 bits (424), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 113/336 (33%), Positives = 180/336 (53%), Gaps = 24/336 (7%)
Query: 174 LEVFARLGFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLAYLLPALVHVNA------Q 227
+E R GF TP+QA+ P + +D++ A TGSGKTLA+LLP + + +
Sbjct: 28 IEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPK 87
Query: 228 PRLVQGDGPIVLVLAPTRELAVQIQQEAMKFGSRA-NIRITCIYGGAPKGPQIRDLQR-G 285
P V G ++++PTREL+ QI + A F S N+ + GG + L+ G
Sbjct: 88 PHQVMG-----VIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEG 142
Query: 286 VEIVIATPGRLIDMLE-AQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTL 344
++I TPGRL DM++ + + + + L+LDEADR+LDMGF+ Q+ I+S++ R+T
Sbjct: 143 ANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTG 202
Query: 345 YWSATWPREVETLARQFLRNAYKVIIG--SPDLKANHCINQVVEVVTDIEKYNRLIKLLK 402
+SAT + V LA+ LRNA +VI G S ++ + ++ D +K ++L+ LL
Sbjct: 203 LFSATQTQAVADLAKAGLRNAMEVISGAESKSKTSSGLYCEYLKCEAD-QKSSQLVHLLI 261
Query: 403 EVMDGGRILIFMETKKGCDQ-----VTRQLRMEGWPALSIHGDKNQAERDWVLAEFKSGR 457
E + ++ FM C +++ ++ S HG +Q RD LA F
Sbjct: 262 ENKNKKLVVFFMTC--ACVDYWGLVLSKIPTLKSISFFSTHGKMDQKGRDTALASFTEAS 319
Query: 458 SPIMTATDVAARGLDVKDIKFVINYDFPSSLEDYVH 493
S ++ TDVAARGLD+ I +V+ YD P + ++H
Sbjct: 320 SGVLLCTDVAARGLDIPGIDYVVQYDPPQDPDVFIH 355
>AT3G18600.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr3:6399730-6403013 REVERSE
Length = 568
Score = 166 bits (420), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 108/316 (34%), Positives = 169/316 (53%), Gaps = 4/316 (1%)
Query: 180 LGFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLAYLLPALVHVNAQPRLVQGDGPIVL 239
+GF T IQA L G+D++G A TGSGKTLA+L+PA V + + R +G V+
Sbjct: 107 MGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPA-VELLFKERFSPRNGTGVI 165
Query: 240 VLAPTRELAVQIQQEAMKFGSRANIRITCIYGGAPKGPQIRDLQRGVEIVIATPGRLIDM 299
V+ PTRELA+Q + A + + ++ + GG + + + + G +VIATPGRL+D
Sbjct: 166 VICPTRELAIQTKNVAEELLKHHSQTVSMVIGGNNRRSEAQRIASGSNLVIATPGRLLDH 225
Query: 300 LEAQHTNL-QRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPREVETLA 358
L+ + + + LV+DEADR+L+ FE + KI+ + RQT +SAT +V+ LA
Sbjct: 226 LQNTKAFIYKHLKCLVIDEADRILEENFEEDMNKILKILPKTRQTALFSATQTSKVKDLA 285
Query: 359 RQFLRNAYKVIIGSPDLK-ANHCINQVVEVVTDIEKYNRLIKLLKEVMDGGRILIFMETK 417
R L + V + K N + Q VV ++ LI LK+ ++ +I++F T
Sbjct: 286 RVSLTSPVHVDVDDGRRKVTNEGLEQGYCVVPSKQRLILLISFLKKNLNK-KIMVFFSTC 344
Query: 418 KGCDQVTRQLRMEGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIK 477
K T +++ IHG +Q R +F + I+ TDVAARGLD+ +
Sbjct: 345 KSVQFHTEIMKISDVDVSDIHGGMDQNRRTKTFFDFMKAKKGILLCTDVAARGLDIPSVD 404
Query: 478 FVINYDFPSSLEDYVH 493
++I YD P +Y+H
Sbjct: 405 WIIQYDPPDKPTEYIH 420
>AT5G11170.1 | Symbols: | DEAD/DEAH box helicase, putative (RH15) |
chr5:3553335-3556647 FORWARD
Length = 427
Score = 162 bits (409), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 99/351 (28%), Positives = 181/351 (51%), Gaps = 16/351 (4%)
Query: 152 VQGQDVPRPIRSFHEASFPGYCLE-----VFARLGFVEPTPIQAQGWPMALTGRDLIGIA 206
V G+ V + H + F + L+ GF P+ +Q + P A+ G D+I A
Sbjct: 31 VNGEAVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQA 90
Query: 207 ETGSGKTLAYLLPALVHVNAQPRLVQGDGPIVLVLAPTRELAVQIQQEAMKFGSRA-NIR 265
++G GKT ++L L + P V LVL TRELA QI E ++F + + +
Sbjct: 91 KSGMGKTAVFVLSTLQQIEPSPGQVSA-----LVLCHTRELAYQICNEFVRFSTYLPDTK 145
Query: 266 ITCIYGGAPKGPQIRDLQRGV--EIVIATPGRLIDMLEAQHTNLQRVTYLVLDEADRMLD 323
++ YGG +DL + IV+ TPGR++ + + +L+ V + +LDE D+ML+
Sbjct: 146 VSVFYGGVNIKIH-KDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLE 204
Query: 324 -MGFEPQIRKIVSQIRPDRQTLYWSATWPREVETLARQFLRNAYKVIIGSPDLKANHCIN 382
+ +++I D+Q + +SAT +E+ + ++F+++ ++ + H +
Sbjct: 205 SLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLV 264
Query: 383 QVVEVVTDIEKYNRLIKLLKEVMDGGRILIFMETKKGCDQVTRQLRMEGWPALSIHGDKN 442
Q ++++EK NR + L + +D +++IF+++ ++ + L +P++ IH +
Sbjct: 265 QHYIKLSEMEK-NRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMS 323
Query: 443 QAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKFVINYDFPSSLEDYVH 493
Q ER FK G I+ ATD+ RG+D++ + VINYD P S + Y+H
Sbjct: 324 QEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLH 374
>AT5G11200.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr5:3567390-3570687 FORWARD
Length = 427
Score = 162 bits (409), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 99/351 (28%), Positives = 181/351 (51%), Gaps = 16/351 (4%)
Query: 152 VQGQDVPRPIRSFHEASFPGYCLE-----VFARLGFVEPTPIQAQGWPMALTGRDLIGIA 206
V G+ V + H + F + L+ GF P+ +Q + P A+ G D+I A
Sbjct: 31 VNGEAVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQA 90
Query: 207 ETGSGKTLAYLLPALVHVNAQPRLVQGDGPIVLVLAPTRELAVQIQQEAMKFGSRA-NIR 265
++G GKT ++L L + P V LVL TRELA QI E ++F + + +
Sbjct: 91 KSGMGKTAVFVLSTLQQIEPSPGQVSA-----LVLCHTRELAYQICNEFVRFSTYLPDTK 145
Query: 266 ITCIYGGAPKGPQIRDLQRGV--EIVIATPGRLIDMLEAQHTNLQRVTYLVLDEADRMLD 323
++ YGG +DL + IV+ TPGR++ + + +L+ V + +LDE D+ML+
Sbjct: 146 VSVFYGGVNIKIH-KDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLE 204
Query: 324 -MGFEPQIRKIVSQIRPDRQTLYWSATWPREVETLARQFLRNAYKVIIGSPDLKANHCIN 382
+ +++I D+Q + +SAT +E+ + ++F+++ ++ + H +
Sbjct: 205 SLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLV 264
Query: 383 QVVEVVTDIEKYNRLIKLLKEVMDGGRILIFMETKKGCDQVTRQLRMEGWPALSIHGDKN 442
Q ++++EK NR + L + +D +++IF+++ ++ + L +P++ IH +
Sbjct: 265 QHYIKLSEMEK-NRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMS 323
Query: 443 QAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKFVINYDFPSSLEDYVH 493
Q ER FK G I+ ATD+ RG+D++ + VINYD P S + Y+H
Sbjct: 324 QEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLH 374
>AT5G08620.1 | Symbols: STRS2 | STRS2 (STRESS RESPONSE SUPPRESSOR
2); ATP-dependent helicase | chr5:2794541-2797549
FORWARD
Length = 563
Score = 156 bits (395), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 110/326 (33%), Positives = 170/326 (52%), Gaps = 13/326 (3%)
Query: 181 GFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLAYLLPALVHV-NAQPRLVQGDGP--I 237
GF T +Q P+ L G+D++ A+TG+GKT+A+LLP++ V A P P I
Sbjct: 99 GFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPII 158
Query: 238 VLVLAPTRELAVQIQQEA-MKFGSRANIRITCIYGGAPKGPQIRDLQRG-VEIVIATPGR 295
VLV+ PTRELA Q EA + +I + + GG + R LQ+ +I++ATPGR
Sbjct: 159 VLVVCPTRELACQAAAEANILLKYHPSIGVQVVIGGTKLPTEQRRLQKSPCQILVATPGR 218
Query: 296 LIDMLEAQH---TNLQRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPR 352
L D ++ T L V LVLDEAD +LDMGF +I +I++ + RQT +SAT
Sbjct: 219 LKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREIERIIAAVPKQRQTFLFSATVSD 278
Query: 353 EVETLARQFLRNAYKVI--IGSPDLKANHCINQVVEVVTDIEKYNRLIKLLKE-VMD--G 407
EV + L+ ++ + + + + ++Q+ + + ++ L LLK+ + D G
Sbjct: 279 EVRQICHVALKRDHEFVNCVQEGAGETHQKVSQMYMIASLDRHFSLLYGLLKKHITDNVG 338
Query: 408 GRILIFMETKKGCDQVTRQLRMEGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVA 467
+++IF T V L IH K Q+ R V EF+ +S I+ +DV+
Sbjct: 339 YKVIIFCTTAMVTRLVADLLGKLSLNVREIHSRKPQSYRTRVSDEFRKSKSIILVTSDVS 398
Query: 468 ARGLDVKDIKFVINYDFPSSLEDYVH 493
ARG+D D+ V+ PS E Y+H
Sbjct: 399 ARGVDYPDVSLVVQMGLPSDREQYIH 424
>AT5G63630.1 | Symbols: | DEAD box RNA helicase, putative |
chr5:25489824-25492422 REVERSE
Length = 522
Score = 156 bits (395), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 108/335 (32%), Positives = 173/335 (51%), Gaps = 17/335 (5%)
Query: 174 LEVFARLGFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLAYLLPAL-VHVNAQPRLVQ 232
L+ G+ T +Q P+ L G+D++ A+TG+GKT+A+LLP++ V V + P
Sbjct: 66 LKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPD 125
Query: 233 GDGP--IVLVLAPTRELAVQIQQEA---MKFGSRANIRITCIYGGAPKGPQIRDLQRG-V 286
P + LV+ PTRELA Q EA +K+ +I + + GG G + + +Q
Sbjct: 126 NKRPPILALVICPTRELANQAATEANTLLKY--HPSIGVQVVIGGTRLGLEQKRMQTNPC 183
Query: 287 EIVIATPGRLIDMLEAQ---HTNLQRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQT 343
+I++ATPGRL D +E T L+ V LVLDEAD +LDMGF I +I+S + +RQT
Sbjct: 184 QILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDIERIISAVPKERQT 243
Query: 344 LYWSATWPREVETLARQFLRNAYKVI--IGSPDLKANHCINQVVEVVTDIEKYNRLIKLL 401
+SAT P EV + LR ++ + + ++ + + Q+ + + ++ L LL
Sbjct: 244 FLFSATVPEEVRQICLVALRRDHEFVNCVHEGTIETHQQVRQMHMIASLDRHFSLLYTLL 303
Query: 402 KEVMDGG---RILIFMETKKGCDQVTRQLRMEGWPALSIHGDKNQAERDWVLAEFKSGRS 458
+E + G ++++F T V L IH K Q+ R V EF+ +
Sbjct: 304 REHIMGNVDYKVIVFCTTAMVTKLVADLLGELNLNVREIHSRKPQSYRTRVSNEFRKSKG 363
Query: 459 PIMTATDVAARGLDVKDIKFVINYDFPSSLEDYVH 493
I+ +DV+ARG+D D+ V+ P E Y+H
Sbjct: 364 LILVTSDVSARGVDYPDVTLVLQVGLPKDREQYIH 398
>AT5G08610.1 | Symbols: | DEAD box RNA helicase (RH26) |
chr5:2790342-2794060 FORWARD
Length = 850
Score = 155 bits (393), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 112/336 (33%), Positives = 170/336 (50%), Gaps = 17/336 (5%)
Query: 173 CLEVFARLGFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLAYLLPALVHVNAQP---R 229
L+ GF T +Q P+ L G+D++ A+TG+GKT+A+LLPA+ V P R
Sbjct: 393 SLKAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASR 452
Query: 230 LVQGDGPIVLVLAPTRELAVQIQQEA---MKFGSRANIRITCIYGGAPKGPQIRDLQRG- 285
+ IVLV+ PTRELA Q EA +K+ +I + + GG + R +Q
Sbjct: 453 DSRQPPIIVLVVCPTRELASQAAAEANTLLKY--HPSIGVQVVIGGTKLPTEQRRMQTNP 510
Query: 286 VEIVIATPGRLIDMLEAQH---TNLQRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 342
+I++ATPGRL D +E T L V LVLDEAD +LDMGF I +I++ + RQ
Sbjct: 511 CQILVATPGRLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRRDIERIIAAVPKQRQ 570
Query: 343 TLYWSATWPREVETLARQFLRNAYKVI--IGSPDLKANHCINQVVEVVTDIEKYNRLIKL 400
T +SAT P EV + L+ ++ I + + + + Q+ + + ++ L L
Sbjct: 571 TFLFSATVPEEVRQICHVALKRDHEFINCVQEGSGETHQKVTQMYMIASLDRHFSLLHVL 630
Query: 401 LKEVMDGG---RILIFMETKKGCDQVTRQLRMEGWPALSIHGDKNQAERDWVLAEFKSGR 457
LKE + +++IF T V L IH K Q+ R V EF+ +
Sbjct: 631 LKEHIADNVDYKVIIFCTTAMVTRLVADLLSQLSLNVREIHSRKPQSYRTRVSDEFRKSK 690
Query: 458 SPIMTATDVAARGLDVKDIKFVINYDFPSSLEDYVH 493
+ I+ +DV+ARG+D D+ V+ PS E Y+H
Sbjct: 691 AIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIH 726
>AT5G54910.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr5:22315894-22318945 REVERSE
Length = 739
Score = 155 bits (393), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 116/354 (32%), Positives = 184/354 (51%), Gaps = 14/354 (3%)
Query: 182 FVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLAYLLPALVHVNAQPRLVQGDGPIVLVL 241
+V+ T +Q+ P AL GRD++G A TGSGKTLA+++P L ++ + R DG +++
Sbjct: 91 YVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPILEKLHRE-RWSPEDGVGCIII 149
Query: 242 APTRELAVQIQQEAMKFGSRANIRITCIYGGAPKGPQIRDLQRGVEIVIATPGRLID-ML 300
+PTRELA Q K G + GG ++ + I++ PGRL+ M
Sbjct: 150 SPTRELAAQTFGVLNKVGKFHKFSAGLLIGGREGVDVEKERVHEMNILVCAPGRLLQHMD 209
Query: 301 EAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPREVETLARQ 360
E + ++ L+LDEADR+LD F+ Q+ I+SQ+ RQTL +SAT ++V+ LAR
Sbjct: 210 ETPNFECPQLQILILDEADRVLDSAFKGQLDPIISQLPKHRQTLLFSATQTKKVKDLARL 269
Query: 361 FLRNAYKVIIGSPDLKAN-HCINQVVEVVTDIEKYNRLIKLLKEVMDGGRILIFMETKKG 419
LR+ + + + + A + Q V +V +K + L +K ++ RIL+F+ TKK
Sbjct: 270 SLRDPEYISVHAEAVTATPTSLMQTVMIVPVEKKLDMLWSFIKTHLN-SRILVFLSTKKQ 328
Query: 420 CD---QVTRQLRMEGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDV-KD 475
+ +LR G P S+HG +Q +R V ++F R ++ TDV ARGLD K
Sbjct: 329 VKFVHEAFNKLR-PGIPLKSLHGKMSQEKRMGVYSQFIE-RQSVLFCTDVLARGLDFDKA 386
Query: 476 IKFVINYDFPSSLEDYVHXXXXXXXXXXXXXXXXFFTHANAKYARELIKILQDA 529
+ +V+ D P + Y+H F T + K +I+ LQ+A
Sbjct: 387 VDWVVQVDCPEDVASYIHRVGRTARFYTQGKSLLFLTPSEEK----MIEKLQEA 436
>AT5G05450.1 | Symbols: | DEAD/DEAH box helicase, putative (RH18) |
chr5:1612078-1615196 FORWARD
Length = 593
Score = 151 bits (381), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 119/356 (33%), Positives = 177/356 (49%), Gaps = 39/356 (10%)
Query: 166 EASFPGYCLEVFARLGFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLAYLLPALVHVN 225
E G +E + F TP+QA P+ + +D+ A TGSGKTLA+++P LV +
Sbjct: 20 EPPLSGDIIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVP-LVEIL 78
Query: 226 A-------QPRLVQGDGPIVLVLAPTRELAVQIQQEAMKFGSR-ANIRITCIYGGAPKGP 277
+P V G ++++PTREL+ QI A F S AN+ + GG
Sbjct: 79 RRSTSFPPKPHQVMG-----VIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKA 133
Query: 278 QIRDLQR-GVEIVIATPGRLIDMLEAQHT-NLQRVTYLVLDEADRMLDMGFEPQIRKIVS 335
++ ++ G ++I TPGRL D++E + + + L+LDEADR+L+MGF+ Q+ I+S
Sbjct: 134 DMKIIEEEGCNVLIGTPGRLSDIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIIS 193
Query: 336 QIRPDRQTLYWSATWPREVETLARQFLRNAYKVII--GSPDLKANHCIN---------QV 384
++ R+T +SAT VE LA+ LRN +V + S + N +
Sbjct: 194 RLPKQRRTGLFSATQTEGVEELAKAGLRNPVRVEVRAKSKSESSQQLTNSKTPSGLHLEY 253
Query: 385 VEVVTDIEKYNRLIKLLKEVMDGGRILIFMETKKGCDQVTR-QLRMEGWPALS------I 437
+E D +K ++L+ LL + D I+ FM C V L + PAL I
Sbjct: 254 MECEAD-KKSSQLVDLLIKNSDKKLIVFFM----TCASVDYWGLVLSKIPALKSISLIPI 308
Query: 438 HGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKFVINYDFPSSLEDYVH 493
HGD Q RD LA F S + TDVAARGLD+ I +V+ YD P + H
Sbjct: 309 HGDMKQNARDKALASFTKASSGALLCTDVAARGLDIPGIDYVVQYDPPQDPNMFNH 364
>AT2G40700.1 | Symbols: | DEAD/DEAH box helicase, putative (RH17) |
chr2:16983861-16986470 FORWARD
Length = 609
Score = 150 bits (380), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 123/464 (26%), Positives = 203/464 (43%), Gaps = 87/464 (18%)
Query: 145 RASRDITVQGQDVPRPIRS-FHEASFPGYCL------EVFARLGFVEPTPIQAQGWPMAL 197
+++R+ + +D + F SF L ++ R+GF PT +QAQ P+ L
Sbjct: 6 QSARETKQEAKDASKAKSGLFASCSFSSLGLDTKLSDQLKERMGFEAPTLVQAQAIPVIL 65
Query: 198 TGRDLIGIAETGSGKTLAYLLPALVHVNAQ-PRLVQGDGPIVLVLAPTRELAVQIQQEAM 256
+GRD++ A TG+GKT+AYL P + H+ P++ + G LV+ PTREL +Q+ +
Sbjct: 66 SGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLE 125
Query: 257 KFGSRAN-IRITCIYGGAPKGPQIRDLQRGVEIVIATPGRLIDMLEAQ----HTNLQRVT 311
K R + I + GG K + L++G+ I+IATPGRL+D L+ H NL+
Sbjct: 126 KLLHRFHWIVPGYVMGGEKKAKEKARLRKGISILIATPGRLLDHLKNTASFVHKNLR--- 182
Query: 312 YLVLDEADRMLDMGFEPQIRKIVS-------------QIRP---DRQTLYWSATWPREVE 355
+++ DEAD +L++G+ +I +I+ I P +Q L SAT +V
Sbjct: 183 WVIFDEADSILELGYGKEIEQIIKLLGSGQNEQGEEDDIVPKGIQKQNLLLSATLNDKVN 242
Query: 356 TLARQFLRNAYKVIIGSPDLKANHCI-----------NQVVEVVTD-------------- 390
LA+ L + + + + L+ N I + V+ V
Sbjct: 243 DLAKLSLDDPVMIGLDNTKLQQNLSIESPAAPDSDAEDMVIHVNKSANPLSEDYGIPSQL 302
Query: 391 IEKYNR---------LIKLLKEVMD---GGRILIFMETKKGCDQVTRQLRMEGWP----- 433
+++Y R L+ +LK + + ++++F T+ D L WP
Sbjct: 303 VQRYLRVPCGARLVALLSVLKNLFEREASQKVVVFFSTRDAVDFHYSLLSEFQWPPNSET 362
Query: 434 -------------ALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKFVI 480
+HG Q +R FK+ + ++ +TDVAARGLD ++ +I
Sbjct: 363 EEEGTKELFLKCKTFRLHGSMEQEDRRSAFGTFKTEKQAVLLSTDVAARGLDFPKVRCII 422
Query: 481 NYDFPSSLEDYVHXXXXXXXXXXXXXXXXFFTHANAKYARELIK 524
YD P +YVH F Y +EL K
Sbjct: 423 QYDCPGEATEYVHRVGRTARIGEKGEALLFLQPIEIDYLKELKK 466
>AT1G63250.1 | Symbols: | DEAD box RNA helicase, putative |
chr1:23466949-23470116 REVERSE
Length = 798
Score = 148 bits (374), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 121/406 (29%), Positives = 197/406 (48%), Gaps = 25/406 (6%)
Query: 107 NNISLPKQDFRNLVPFEKNFYIESPAVRAMSEQEVMQYRASRDITVQGQDVPR----PIR 162
++I L K+ RN+ ++ Y P + + +E + R S D ++ + P +
Sbjct: 274 HDIKLTKRVNRNVT--DEELY---PPLDINTVREDLSKRKSVDNVMEEKQEPHDSIYSAK 328
Query: 163 SFHEASFPGYCLEVFARLGFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLAYLLPAL- 221
F E+ L+ + G ++ T +Q L G+D + A+TG+GK++A+LLPA+
Sbjct: 329 RFDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIE 388
Query: 222 --VHVNAQPRLVQGDGPI-VLVLAPTRELAVQIQQEA---MKFGSRANIRITCIYGGAPK 275
+ + V PI L+L PTRELA QI E +KF ++ T I G K
Sbjct: 389 TVLKAMNSGKGVNKVAPIFALILCPTRELASQIAAEGKALLKFHDGIGVQ-TLIGGTRFK 447
Query: 276 GPQIRDLQRGVEIVIATPGRLIDMLEAQH---TNLQRVTYLVLDEADRMLDMGFEPQIRK 332
Q R +I+IATPGRL+D +E + + L + ++DEAD +LD+GF + K
Sbjct: 448 LDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFRRDVEK 507
Query: 333 IVSQIRPDRQTLYWSATWPREVETLARQFLRNAYKVI--IGSPDLKANHCINQVVEVVTD 390
I+ + RQ+L +SAT P+EV +++ L+ + I IG ++ + + Q V
Sbjct: 508 IIDCLPRQRQSLLFSATIPKEVRRVSQLVLKRDHSYIDTIGLGCVETHDKVRQSCIVAPH 567
Query: 391 IEKYNRLIKLLKEVMDGG---RILIFMETKKGCDQVTRQLRMEGWPALSIHGDKNQAERD 447
++ + LLKE ++ +I++F T + LR IH K Q R
Sbjct: 568 ESHFHLVPHLLKEHINNTPDYKIIVFCSTGMVTSLMYTLLREMKLNVREIHARKPQLHRT 627
Query: 448 WVLAEFKSGRSPIMTATDVAARGLDVKDIKFVINYDFPSSLEDYVH 493
V EFK I+ +DV+ARG++ D+ VI PS E Y+H
Sbjct: 628 RVSDEFKESNRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIH 673
>AT2G07750.1 | Symbols: | DEAD box RNA helicase, putative |
chr2:3576480-3580393 FORWARD
Length = 845
Score = 147 bits (372), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 108/346 (31%), Positives = 172/346 (49%), Gaps = 14/346 (4%)
Query: 162 RSFHEASFPGYCLEVFARLGFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLAYLLPAL 221
+ F E+ L+ + G V+ T +Q L G+D + A+TG+GK++A+LLPA+
Sbjct: 375 KRFDESCISPLTLKALSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAI 434
Query: 222 ---VHVNAQPRLVQGDGPI-VLVLAPTRELAVQIQQEAMKF-GSRANIRITCIYGGAP-K 275
+ + V PI VL+L PTRELA QI E + I + + GG +
Sbjct: 435 ETVLKAMNSGKGVHKVAPIFVLILCPTRELASQIAAEGKALLKNHDGIGVQTLIGGTRFR 494
Query: 276 GPQIRDLQRGVEIVIATPGRLIDMLEAQH---TNLQRVTYLVLDEADRMLDMGFEPQIRK 332
Q R +I+IATPGRL+D +E + + L + ++DEAD +LD+GF+ + K
Sbjct: 495 LDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFKRDVEK 554
Query: 333 IVSQIRPDRQTLYWSATWPREVETLARQFLRNAYKVI--IGSPDLKANHCINQVVEVVTD 390
I+ + RQ+L +SAT P+EV +++ L+ + I IG ++ + + Q V
Sbjct: 555 IIDCLPRQRQSLLFSATIPKEVRRVSQLVLKRDHSYIDTIGLGCVETHDKVKQSCIVAPH 614
Query: 391 IEKYNRLIKLLKEVMDGG---RILIFMETKKGCDQVTRQLRMEGWPALSIHGDKNQAERD 447
++ + LLKE ++ +I++F T + LR IH K Q R
Sbjct: 615 ESHFHLVPHLLKEHINNMPDYKIIVFCSTGMVTSLMYTLLREMKLNVREIHARKPQLHRT 674
Query: 448 WVLAEFKSGRSPIMTATDVAARGLDVKDIKFVINYDFPSSLEDYVH 493
V EFK I+ +DV+ARG++ D+ VI PS E Y+H
Sbjct: 675 CVSDEFKESNRLILVTSDVSARGMNYPDVTLVIQVGIPSDREQYIH 720
>AT4G09730.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr4:6136330-6139507 FORWARD
Length = 621
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 102/353 (28%), Positives = 166/353 (47%), Gaps = 26/353 (7%)
Query: 161 IRSFHEASFPGYCLEVFARLGFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLAYLLP- 219
+ +F E + L PT IQ G P + + ++ + TGSGKTLAYLLP
Sbjct: 111 VENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPI 170
Query: 220 --------ALVHVNAQPRLVQGDGPIVLVLAPTRELAVQIQQEAMKFGSRANIRITCIYG 271
A + +PR P +VL PTREL+ Q+ + A A R + G
Sbjct: 171 VQLMREDEANLGKKTKPRR-----PRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSG 225
Query: 272 GAPKGPQIRDLQRGVEIVIATPGRLIDMLEAQHTNLQRVTYLVLDEADRMLDMGFEPQIR 331
G+ PQ L +++V+ TPGR++ +E + + YLVLDEAD M D GF P+IR
Sbjct: 226 GSRIRPQEDSLNNAIDMVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEIR 285
Query: 332 KIVSQIRPDR--------QTLYWSATWPREVETLARQFLRNAYKVIIGSPDLKANHCINQ 383
K ++ + QT+ +AT V+ L + + + + K + +
Sbjct: 286 KFLAPLNQRALKTNDQGFQTVLVTATMTMAVQKLVDEEFQGIEHLRTSTLHKKIANARHD 345
Query: 384 VVEVVTDIEKYNRLIKLLK-EVMDGGRILIFMETKKGCDQVTRQLRMEGWPALSIHGDKN 442
+++ +K L+++L+ + G ++++F T V L ++ HG+
Sbjct: 346 FIKLSGGEDKLEALLQVLEPSLAKGSKVMVFCNTLNSSRAVDHYLSENQISTVNYHGEVP 405
Query: 443 QAERDWVLAEFK--SGRSPIMTATDVAARGLDVKDIKFVINYDFPSSLEDYVH 493
+R L +FK G P + TD+AARGLD+ D+ V+ +DFP + DY+H
Sbjct: 406 AEQRVENLKKFKDEEGDCPTLVCTDLAARGLDL-DVDHVVMFDFPKNSIDYLH 457
>AT5G11170.2 | Symbols: | DEAD/DEAH box helicase, putative (RH15) |
chr5:3554273-3556647 FORWARD
Length = 344
Score = 143 bits (360), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 86/297 (28%), Positives = 159/297 (53%), Gaps = 11/297 (3%)
Query: 201 DLIGIAETGSGKTLAYLLPALVHVNAQPRLVQGDGPIVLVLAPTRELAVQIQQEAMKFGS 260
D+I A++G GKT ++L L + P V LVL TRELA QI E ++F +
Sbjct: 2 DVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSA-----LVLCHTRELAYQICNEFVRFST 56
Query: 261 RA-NIRITCIYGGAPKGPQIRDLQRGV--EIVIATPGRLIDMLEAQHTNLQRVTYLVLDE 317
+ +++ YGG +DL + IV+ TPGR++ + + +L+ V + +LDE
Sbjct: 57 YLPDTKVSVFYGGVNIKIH-KDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDE 115
Query: 318 ADRMLD-MGFEPQIRKIVSQIRPDRQTLYWSATWPREVETLARQFLRNAYKVIIGSPDLK 376
D+ML+ + +++I D+Q + +SAT +E+ + ++F+++ ++ +
Sbjct: 116 CDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKL 175
Query: 377 ANHCINQVVEVVTDIEKYNRLIKLLKEVMDGGRILIFMETKKGCDQVTRQLRMEGWPALS 436
H + Q ++++EK NR + L + +D +++IF+++ ++ + L +P++
Sbjct: 176 TLHGLVQHYIKLSEMEK-NRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSIC 234
Query: 437 IHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKFVINYDFPSSLEDYVH 493
IH +Q ER FK G I+ ATD+ RG+D++ + VINYD P S + Y+H
Sbjct: 235 IHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLH 291
>AT3G53110.1 | Symbols: LOS4 | LOS4 (Low expression of osmotically
responsive genes 1); ATP-dependent helicase |
chr3:19698946-19701401 FORWARD
Length = 496
Score = 140 bits (352), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 99/324 (30%), Positives = 163/324 (50%), Gaps = 17/324 (5%)
Query: 176 VFARLGFVEPTPIQAQGWPMALT--GRDLIGIAETGSGKTLAYLLPALVHVNAQPRLVQG 233
++ + F +P+ IQA PM +T + LI A GSGKT ++L L V+ P L +
Sbjct: 106 LYVEMKFEKPSKIQAISLPMIMTPPHKHLIAQAHNGSGKTTCFVLGMLSRVD--PTLRE- 162
Query: 234 DGPIVLVLAPTRELA---VQIQQEAMKF-GSRANIRITCIYGGAPKGPQIRDLQRGVEIV 289
P L + PTRELA +++ Q+ KF G A + + GAP R +V
Sbjct: 163 --PQALCICPTRELANQNMEVLQKMGKFTGITAELAVPDSTRGAPAA--TRGAPVSAHVV 218
Query: 290 IATPGRLIDMLEAQHTNLQRVTYLVLDEADRMLDM-GFEP---QIRKIVSQIRPDRQTLY 345
I TPG L + + L + LV DEAD ML GF +I K + ++ P+ Q L
Sbjct: 219 IGTPGTLKKWMAFKRLGLNHLKILVFDEADHMLATDGFRDDSLKIMKDIGRVNPNFQVLL 278
Query: 346 WSATWPREVETLARQFLRNAYKVIIGSPDLKANHCINQVVEVVTDIEKYNRLIKLLKEVM 405
+SAT+ V+ + +++ ++ + DL + V + K + + E+
Sbjct: 279 FSATFNETVKDFVARTVKDPNQLFVKREDLALDSVKQYKVVCPKEQNKIEVIKDQIMELG 338
Query: 406 DGGRILIFMETKKGCDQVTRQLRMEGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATD 465
D G+ +IF++TK +V + L G+ S+HG+ +++RD ++ EFK + ++ ATD
Sbjct: 339 DIGQTIIFVKTKASAQKVHKALAEMGYDVTSVHGNLTESDRDKIVKEFKECLTQVLIATD 398
Query: 466 VAARGLDVKDIKFVINYDFPSSLE 489
V ARG D + + V+NY+ P+ E
Sbjct: 399 VIARGFDQQRVNLVVNYNLPTKYE 422
>AT1G71280.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr1:26873924-26875814 REVERSE
Length = 465
Score = 136 bits (343), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 100/317 (31%), Positives = 162/317 (51%), Gaps = 42/317 (13%)
Query: 174 LEVFARLGFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLAYLLPALVHVNA------Q 227
+E R GF TP+QA+ P + +D++ A TGSGKTLA+LLP + + +
Sbjct: 29 IEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPK 88
Query: 228 PRLVQGDGPIVLVLAPTRELAVQIQQEAMKFGSRANIRITCIYGGAPKGPQIRDLQRGVE 287
P V G ++++PTREL+ QI + A RA +R+ + + G
Sbjct: 89 PHQVMG-----VIISPTRELSAQIHKVA-----RA-VRLDFAKCREVEADMNTLEEEGAN 137
Query: 288 IVIATPGRLIDMLE-AQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYW 346
++I TPGRL DM++ + + + + L+LDEADR+LDMGF+ Q+ I+S++ R+T +
Sbjct: 138 LLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLF 197
Query: 347 SATWPREVETLARQFLRNAYKVIIGSPDLKANHCINQVVEVVTDIEKYNRLIKLLKEVMD 406
SAT + V LA+ LRN Y +A+ +Q+V ++ IE N+
Sbjct: 198 SATQTQAVADLAKAGLRNPY------LKCEADQKSSQLVHLL--IENKNK---------- 239
Query: 407 GGRILIFMETKKGCDQ----VTRQLRMEGWPALSIHGDKNQAERDWVLAEFKSGRSPIMT 462
++++F T D +++ ++ HG +Q RD LA F S ++
Sbjct: 240 --KLVVFFMTCACVDYWGLVISKIPSLKSISFFPTHGKMDQKGRDTALASFTEASSGVLL 297
Query: 463 ATDVAARGLDVKDIKFV 479
TDVAARGLD+ I ++
Sbjct: 298 CTDVAARGLDIPGIVYI 314
>AT1G12770.1 | Symbols: EMB1586 | EMB1586 (EMBRYO DEFECTIVE 1586) |
chr1:4351886-4353541 FORWARD
Length = 551
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 107/391 (27%), Positives = 169/391 (43%), Gaps = 66/391 (16%)
Query: 162 RSFHEASFPGYCLEVFARLGFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLAYLLPAL 221
+SF E P L+ R GF PT +Q+ P + G D + + TGSGKTLAYLLP L
Sbjct: 110 KSFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPIL 169
Query: 222 VHV-----NAQPRLVQGDGPI---VLVLAPTRELAVQIQQEAMKFGSRANIR-ITCIYGG 272
+ ++ + D +++AP+REL +QI +E K + R + + GG
Sbjct: 170 SEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVEKLLGPVHRRMVQQLVGG 229
Query: 273 APKGPQIRDLQRGV-EIVIATPGRLIDMLEAQHTNLQRVTYLVLDEADRMLDMGFEPQIR 331
A + Q L++ IV+ TPGR+ ++ + + +LVLDE D +L F I
Sbjct: 230 ANRMRQEEALKKNKPAIVVGTPGRIAEISKGGKLHTHGCRFLVLDEVDELLSFNFREDIH 289
Query: 332 KIVSQI--------------RPDRQTLYWSATWPREVETLARQF-----LRNAYKV---- 368
+I+ + R +RQT+ SAT P V A+ + L A KV
Sbjct: 290 RILEHVGKRSGAGPKGEVDERANRQTILVSATVPFSVIRAAKSWSHEPVLVQANKVTPLD 349
Query: 369 ------------------------IIGS--PDLKANHCINQVVEVVTDIEKYNRLIKLLK 402
I S P LK +CI++ V + +
Sbjct: 350 TVQPSAPVMSLTPTTSEADGQIQTTIQSLPPALKHYYCISKHQHKVDTLRR-------CV 402
Query: 403 EVMDGGRILIFMETKKGCDQVTRQLRMEGWPALSIHGDKNQAERDWVLAEFKSGRSPIMT 462
+D ++ FM + V +L G + +HGD + R VL +FK+G ++
Sbjct: 403 HALDAQSVIAFMNHSRQLKDVVYKLEARGMNSAEMHGDLGKLGRSTVLKKFKNGEIKVLV 462
Query: 463 ATDVAARGLDVKDIKFVINYDFPSSLEDYVH 493
+++ARGLDV + V+N + P+ Y H
Sbjct: 463 TNELSARGLDVAECDLVVNLELPTDAVHYAH 493
>AT5G19210.2 | Symbols: | DEAD/DEAH box helicase, putative |
chr5:6461446-6463689 FORWARD
Length = 472
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 107/395 (27%), Positives = 176/395 (44%), Gaps = 41/395 (10%)
Query: 130 SPAVRAMSEQEVMQYRAS-RDITVQGQDVPRPIRSFHEASFPGYCLEVFARLGFVEPTPI 188
SP+ R ++ Q V + + +V VP +R + P + L +GFV PT I
Sbjct: 43 SPSSRIINLQAVAETSSEIESNSVTETTVPLTLRQICQGFVPEHILHRMEEIGFVFPTDI 102
Query: 189 QAQGWPMALTGRDLIGIAETGSGKTLAYLLPALVHVNAQPRLVQGDGPIVLVLAPTRELA 248
Q + P TGRD I A+TGSGKTL YLL +N Q VQ +++ PTREL
Sbjct: 103 QREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLINPQRSSVQA-----VIVVPTRELG 157
Query: 249 VQIQQEAMKFGSRANIRIT-CIYGGAPKGPQIRDLQRGVE-----IVIATPGRLIDMLEA 302
+Q+ + A +++ I + C G +R + ++ I++AT L MLE
Sbjct: 158 MQVTKVARMLAAKSEIDVKGCTVMALLDGGTLRRHKSWLKAEPPAILVATVASLCHMLEK 217
Query: 303 QHTNLQRVTYLVLDEADRMLDMGFE-PQIRKIVSQIRP--DRQTLYWSATWPREVETLAR 359
+ V LV+DE D + + +RK+++ RQT++ SA+ P+ +
Sbjct: 218 HIFRIDSVRVLVVDEVDFLFYSSKQVGSVRKLLTSFSSCDKRQTVFASASIPQH-----K 272
Query: 360 QFLRNAYKVIIGSPDLKANH---------CINQVVEVVTDIEKYNRLIKLLKEVMDGGRI 410
F+ + + D+ H C+ + K+ L+ LL+ I
Sbjct: 273 HFVHDCIQQKWTKRDVVHVHVSAIMPMPLCLLHRFVMCEKTNKHQVLLALLESDAPESAI 332
Query: 411 LIFME----TKKGCDQVTRQLRME--------GWPALSIHGDKNQAERDWVLAEFKSGRS 458
+ E +KK + + L ME L + GD N R L E + G
Sbjct: 333 IFVGEQSEKSKKAGNDPSTTLLMEFLKTSYKGSLEILLLEGDMNFNSRAASLTEIRQGGG 392
Query: 459 PIMTATDVAARGLDVKDIKFVINYDFPSSLEDYVH 493
++ +TD+AARG+D+ + + N+D P ++ DY+H
Sbjct: 393 FLLVSTDIAARGIDLPETTHIFNFDLPQTVTDYLH 427
>AT3G16840.1 | Symbols: | ATP-dependent helicase |
chr3:5738026-5743048 REVERSE
Length = 826
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 104/386 (26%), Positives = 177/386 (45%), Gaps = 75/386 (19%)
Query: 179 RLGFVEPTPIQAQGWPMA-LTGRDLIGIAETGSGKTLAYLLPALVHV------------- 224
RL F EPT IQ + +A G+D+IG AETGSGKTLA+ LP L +
Sbjct: 207 RLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKVGKLYAL 266
Query: 225 -NAQPRLVQGDGPI-VLVLAPTRELAVQIQQEAMKFGSRANIRITCIYGGAPKGPQIRDL 282
+ + DG + L++ PTRELA+Q+ + ++++ I GG Q R L
Sbjct: 267 KGEEAQKYAADGYLRALIITPTRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRL 326
Query: 283 QRGVEIVIATPGRLIDMLEA--QH-TNLQRVTYLVLDEADRMLDMGFEPQIRKIVSQI-- 337
+ EIV+ATPGRL +++ A +H L +++ VLDEADRM++ G +++ I+ +
Sbjct: 327 KEKPEIVVATPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVERGHFRELQSILDLLPV 386
Query: 338 ----------------------RPDRQTLYWSATWP------------------------ 351
+ RQT +SAT
Sbjct: 387 TDKPNEGKTQTVKSNDTVLNVPKKKRQTFVFSATIALSSDFRKKLKRGSSKSKQSSSGEV 446
Query: 352 REVETLA-RQFLRNAYKVIIGSPDLKANHCINQVVE---VVTDIEKYNRLIKLLKEVMDG 407
+E L+ R +R+ +I DL + +E + + ++ + + + V
Sbjct: 447 NSIEVLSERAGMRDNVAII----DLTTTSILAPKIEESFIKCEEKEKDAYLYYILSVHGQ 502
Query: 408 GRILIFMETKKGCDQVTRQLRMEGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVA 467
GR ++F + ++ L++ G ++ + Q R + F++ + I+ ATD+
Sbjct: 503 GRTIVFCTSVTDLRHISGLLKILGLDVCTLFSEMKQRARLKSIDRFRASENGILIATDLV 562
Query: 468 ARGLDVKDIKFVINYDFPSSLEDYVH 493
ARG+D+K+++ +I+Y P S E YVH
Sbjct: 563 ARGIDIKNVRTIIHYKLPHSAEVYVH 588
>AT4G34910.1 | Symbols: | DEAD/DEAH box helicase, putative (RH16) |
chr4:16631666-16634839 FORWARD
Length = 626
Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 99/379 (26%), Positives = 163/379 (43%), Gaps = 49/379 (12%)
Query: 162 RSFHEASFPGYCLEVFARLGFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLAYLLPAL 221
+SF E + + G +PT IQ P L G+D++ A+TGSGKTLAYLLP L
Sbjct: 46 KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLL 105
Query: 222 VHVNAQPRLVQGD-GPIVLVLAPTRELAVQIQQEAMKFGSRANIRITCI-YGGAPKGPQI 279
+ + + + P +L P+REL Q+ E +++ + + +
Sbjct: 106 QKLFSADSVSKKKLAPSAFILVPSRELCQQVYTEVSSLIELCRVQLKAVQLTSSMSASDM 165
Query: 280 RDLQRGV-EIVIATPGRL-----IDMLEAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKI 333
R+ G+ EI+++TP + +LE + + ++ LVLDEAD +L G+E +R +
Sbjct: 166 RNALAGLPEILVSTPACIPKCFAAGVLEPTAVS-ESLSILVLDEADLLLSYGYEDNLRSV 224
Query: 334 VSQIRPDRQTLYWSATWPREVETLARQFLRNAYKVIIGSPDLKANHCINQV----VEVVT 389
S I Q L SAT +VE L + L N + + + K + V +
Sbjct: 225 TSIIPRRCQCLLMSATTSSDVEKLKKLILHNPIVLTLTEDNDKEEAVPSNVQQFWISCSA 284
Query: 390 DIEKYNRLIKLLKEVMDGGRILIFMETKKGCDQVTRQLRMEGWPALSIHGDKNQAERDWV 449
+ + L L EV+ +ILIF+ T ++ L G + ++G+ Q R +
Sbjct: 285 QDKLLHILALLKLEVVQ-KKILIFINTIDMGFRLKLFLEKFGIKSAILNGELPQNSRLHI 343
Query: 450 LAEFKSGRSPIMTATDVAA-----------------------------------RGLDVK 474
L +F +G + ATD + RG+D K
Sbjct: 344 LEQFNAGLFDYLIATDDNSQTKKQKEEAKGEANKENKKNNKRSKPKLDAEFGVVRGIDFK 403
Query: 475 DIKFVINYDFPSSLEDYVH 493
+ VIN+D P S+ Y+H
Sbjct: 404 KVHTVINFDMPQSVTGYIH 422
>AT3G06980.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr3:2201537-2204668 FORWARD
Length = 781
Score = 102 bits (253), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 96/367 (26%), Positives = 162/367 (44%), Gaps = 47/367 (12%)
Query: 162 RSFHEASFPGYCLEVFARLGFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLAYLLPAL 221
++F E ++ F P IQA + + G+ I ++GSGKTLAYL+P +
Sbjct: 374 KTFAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVI 433
Query: 222 VHVNAQPRLVQGDG------PIVLVLAPTRELAVQIQQEAMKFG-SRANIRITCIYGGAP 274
+ + +QG P V+VL PT ELA Q+ S R + GG
Sbjct: 434 QRLREEE--LQGHSKSSPGCPRVIVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFR 491
Query: 275 KGPQIRDLQRGVEIVIATPGRLIDMLEAQHTNLQRVTYLVLDEADRML-DMGFEPQIRKI 333
+ Q+ +L++GV+++IATPGR ++ L + +LDE D + D FE ++ +
Sbjct: 492 QRTQLENLEQGVDVLIATPGRFTYLMNEGILGLSNLRCAILDEVDILFGDDEFEAALQNL 551
Query: 334 VSQIRPDRQTLYWSATWPREVETLARQFLRNAYKVIIGSPDLKANHCINQVVEVVTDI-- 391
++ Q L+ +AT P E+ + + +V++G + + N + E + D
Sbjct: 552 INSSPVTAQYLFVTATLPLEIYNKLVEVFPDC-EVVMGP---RVHRVSNALEEFLVDCSG 607
Query: 392 ----EKY------NRLIKLLKEVMDG--GRILIFMETKKGC----------DQVTRQLRM 429
EK N+ LL+ + + + +IF + C D+ RQL +
Sbjct: 608 DDNAEKTPETAFQNKKTALLQIMEENPVSKTIIFCNKIETCRKVENIFKRVDRKERQLHV 667
Query: 430 EGWPALSIHGDKNQAERDWVLAEFKSGR----SPIMTATDVAARGLDVKDIKFVINYDFP 485
L H +Q R + EF S + S + TD A+RG+D + V+ +DFP
Sbjct: 668 -----LPFHAALSQESRLTNMQEFTSSQPEENSLFLVCTDRASRGIDFSGVDHVVLFDFP 722
Query: 486 SSLEDYV 492
+YV
Sbjct: 723 RDPSEYV 729
>AT4G15850.1 | Symbols: ATRH1 | ATRH1 (Arabidopsis thaliana RNA
helicase 1); ATP-dependent helicase |
chr4:9001471-9004549 FORWARD
Length = 512
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 102/435 (23%), Positives = 176/435 (40%), Gaps = 89/435 (20%)
Query: 175 EVFARLGFVEPTPIQAQGWPMALT----GRDLIGIAETGSGKTLAYLLPALVHVNAQP-R 229
+ +G P+Q W + RD+ + TGSGKTL+Y LP + + ++P R
Sbjct: 34 KALENMGISSLFPVQVAVWHETIGPGGFERDICVNSPTGSGKTLSYALPIVQLLASRPVR 93
Query: 230 LVQGDGPIVLVLAPTRELAVQIQQEAMKFGSRANIRITCIYGGAP---------KGPQI- 279
++ LV+ PTR+LA+Q++ + + G + K P++
Sbjct: 94 CLRA-----LVVLPTRDLALQVKDVFDAIAPAVGLSVGSAVGQSSIAGEISQLIKTPKLD 148
Query: 280 -----------RDLQRGVEIVIATPGRLIDML-EAQHTNLQRVTYLVLDEADRMLDMGFE 327
++L+ V+I++ATPGRL+D + + L+ + YLV+DE DR+L ++
Sbjct: 149 AGICYDPDDLSQNLESAVDILVATPGRLMDHINNTKGFTLEHLRYLVVDETDRLLREAYQ 208
Query: 328 PQIRKIVSQIRPDRQTLYWSAT--WPR---EVETLARQFLRNAYKVIIGSP--------- 373
+ ++ + +L+ S T P ++T+ RQ + +K G P
Sbjct: 209 SWLPTVLQLTQTSDDSLFPSFTPFVPSAFGSLQTVRRQSVERGFK---GKPYPRLVKMVL 265
Query: 374 ------------DLKANH------------------CINQVVEVVTDIEKYNRLIKLLKE 403
L +H C+ + E K L+ LLK
Sbjct: 266 SATLTQDPSKLIQLDLHHPLFMTTGGSRYRLPEKLECLRLICETGM---KPVYLVALLKS 322
Query: 404 VMDGGRILIFMETKKGCDQVTRQLRMEGWP---ALSIHGDKNQAERDWVLAEFKSGRSPI 460
+G + +IF + + ++ + L G P A G NQ+ R L F+ G +
Sbjct: 323 -WEGEKCIIFTSSVETTRRLCKLLNFFGDPKIKAKEYSGGLNQSLRSKELKAFRKGDIQV 381
Query: 461 MTATDVAARGLDVKDIKFVINYDFPSSLEDYVHXXXXXXXXXXXXXXXXFFTHANAKYAR 520
+ A+D RG+DVK + VINYD P + ++H FT + R
Sbjct: 382 LVASDALTRGMDVKGVTNVINYDMPPFAKTFIHRAGRTARAGQAGRC---FTLLSNHEVR 438
Query: 521 ELIKILQDAGQVVSP 535
K+L+ G P
Sbjct: 439 RFSKLLEKVGSDSCP 453
>AT2G28600.1 | Symbols: | ATP binding / ATP-dependent helicase/
nucleic acid binding | chr2:12258922-12261749 FORWARD
Length = 502
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/307 (23%), Positives = 129/307 (42%), Gaps = 17/307 (5%)
Query: 233 GDGPIVLVLAPTRELAVQIQQEAMKFGSRANIRITCIYGGAPKGPQIRDLQRGV-EIVIA 291
G+ P +L L P++ A Q++ K I ++ GAP QI L+ E ++A
Sbjct: 194 GNSPFLLYLVPSQSKASQVRS-VCKALKGIGIHTVSLHQGAPLDHQISGLKSVEPEFIVA 252
Query: 292 TPGRLIDMLEAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWP 351
TP RL++++ + ++ V+ LV+DE + G+ ++ I I QT+ ++ ++
Sbjct: 253 TPERLLEIVTLKGVDISNVSLLVIDELGSLCSGGYLNAVKSIKQAISSKHQTIVFNNSFS 312
Query: 352 REVETLARQFLRNAY-KVIIGSPDLKANHCINQVVEVVTDIEKYNRLIKLLKEVMDGGRI 410
+ + FL + +V + CI Q V V EK +L K K +
Sbjct: 313 ASIIPAVQSFLGGSVNRVTVNESVASQGSCITQTVSVCASEEK--KLQKFAKHLDSSSSK 370
Query: 411 LIFMETK-KGCDQVTRQLRMEGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAAR 469
LI++ TK + ++ L+++G D L+E K R P+ D
Sbjct: 371 LIYIVTKEESFKKIMAILKLKGISV--------STSSDSKLSEVKKSRKPVAHLIDFEQL 422
Query: 470 GLDV-KDIKFVINYDFPSSLEDYVHXXXXXXXXXXXXXXXXFFTHANAKY--ARELIKIL 526
V +D + V+ DF S+E Y + T +A A L+ +L
Sbjct: 423 DTTVMRDSETVLLPDFFPSIEIYTQILTSMARESAHGVLHSYITEKDAASYQAGPLVNVL 482
Query: 527 QDAGQVV 533
++ GQ V
Sbjct: 483 ENCGQNV 489
>AT1G10930.1 | Symbols: ATSGS1, RECQL4A, ATRECQ4A |
ATRECQ4A/ATSGS1/RECQL4A; ATP-dependent helicase |
chr1:3648032-3654997 REVERSE
Length = 1188
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 83/335 (24%), Positives = 141/335 (42%), Gaps = 42/335 (12%)
Query: 175 EVFARLGFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLAYLLPALVHVNAQPRLVQGD 234
+VF F P Q + ++G D+ + TG GK+L Y LPAL+
Sbjct: 447 KVFGNHSF---RPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALIC----------- 492
Query: 235 GPIVLVLAPTRELAVQIQQEAMKFGSRANIRITCIYGGAPKGPQIRDLQR------GVEI 288
G I LV++P L IQ + M +ANI + G Q++ Q ++
Sbjct: 493 GGITLVISP---LVSLIQDQIMNL-LQANIPAASLSAGMEWAEQLKIFQELNSEHSKYKL 548
Query: 289 VIATPGRLI--DMLEAQHTNLQR---VTYLVLDEADRMLDMG--FEP--QIRKIVSQIRP 339
+ TP ++ D L NL + V+DEA + G F P Q I+ Q P
Sbjct: 549 LYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQSLGILKQKFP 608
Query: 340 DRQTLYWSATWPREVETLARQFLRNAYKVIIGSPDLKAN---HCINQVVEVVTDIEKYNR 396
+ L +AT V+ Q L V+ + N + + + + DI+K+
Sbjct: 609 NIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKTKKCLEDIDKF-- 666
Query: 397 LIKLLKEVMDGGRILIFMETKKGCDQVTRQLRMEGWPALSIHGDKNQAERDWVLAEFKSG 456
+KE +I+ ++ C++V+ +L+ G A HG +R ++ ++
Sbjct: 667 ----IKENHFDECGIIYCLSRMDCEKVSERLQEFGHKAAFYHGSMEPEQRAFIQTQWSKD 722
Query: 457 RSPIMTATDVAARGLDVKDIKFVINYDFPSSLEDY 491
I+ AT G++ D++FVI++ P S+E Y
Sbjct: 723 EINIICATVAFGMGINKPDVRFVIHHSLPKSIEGY 757
>AT5G19210.1 | Symbols: | DEAD/DEAH box helicase, putative |
chr5:6462102-6463689 FORWARD
Length = 315
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 99/230 (43%), Gaps = 29/230 (12%)
Query: 288 IVIATPGRLIDMLEAQHTNLQRVTYLVLDEADRMLDMGFE-PQIRKIVSQIRP--DRQTL 344
I++AT L MLE + V LV+DE D + + +RK+++ RQT+
Sbjct: 46 ILVATVASLCHMLEKHIFRIDSVRVLVVDEVDFLFYSSKQVGSVRKLLTSFSSCDKRQTV 105
Query: 345 YWSATWPREVETLARQFLRNAYKVIIGSPDLKANH---------CINQVVEVVTDIEKYN 395
+ SA+ P+ + F+ + + D+ H C+ + K+
Sbjct: 106 FASASIPQH-----KHFVHDCIQQKWTKRDVVHVHVSAIMPMPLCLLHRFVMCEKTNKHQ 160
Query: 396 RLIKLLKEVMDGGRILIFME----TKKGCDQVTRQLRME--------GWPALSIHGDKNQ 443
L+ LL+ I+ E +KK + + L ME L + GD N
Sbjct: 161 VLLALLESDAPESAIIFVGEQSEKSKKAGNDPSTTLLMEFLKTSYKGSLEILLLEGDMNF 220
Query: 444 AERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKFVINYDFPSSLEDYVH 493
R L E + G ++ +TD+AARG+D+ + + N+D P ++ DY+H
Sbjct: 221 NSRAASLTEIRQGGGFLLVSTDIAARGIDLPETTHIFNFDLPQTVTDYLH 270
>AT4G35740.1 | Symbols: RecQl3 | RecQl3 (Recq-like 3); ATP binding /
ATP-dependent helicase | chr4:16936238-16940177 FORWARD
Length = 713
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 77/311 (24%), Positives = 140/311 (45%), Gaps = 19/311 (6%)
Query: 189 QAQGWPMALTGRDLIGIAETGSGKTLAYLLPALVHVNAQPRLVQGDGPIVLVLAPTRELA 248
Q + ++GRD + TG GK++ Y +PAL A+P +V P++ L + +A
Sbjct: 41 QLEAIQAVVSGRDCFCLMPTGGGKSICYQIPAL----AKPGIVLVVSPLI-ALMENQVMA 95
Query: 249 VQIQQEAMKF--GSRANIRITCIYGGAPKG-PQIRDLQRGVEIVIATPGRLIDMLEAQHT 305
++ + A ++ ++A I+ G P +R L E+ IAT G ++ + +
Sbjct: 96 LKEKGIAAEYLSSTQATHVKNKIHEDLDSGKPSVRLLYVTPEL-IATKGFMLKLRKLHSR 154
Query: 306 NLQRVTYLVLDEADRMLDMG--FEPQIRKIVSQIR---PDRQTLYWSATWPREVETLARQ 360
L + + +DEA + G F P R++ S +R D L +AT +V+
Sbjct: 155 GL--LNLIAIDEAHCISSWGHDFRPSYRQL-STLRDSLADVPVLALTATAAPKVQKDVID 211
Query: 361 FLRNAYKVIIGSPDLKANHCINQVVEVVTDIEKYNRLIKLLKEVMDGGRILIFMETKKGC 420
L +++ S + N + + D Y L LLK + I+ +E + C
Sbjct: 212 SLNLRNPLVLKSSFNRPNIFYEVRYKDLLD-NAYTDLGNLLKSCGNICAIIYCLE-RTTC 269
Query: 421 DQVTRQLRMEGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKFVI 480
D ++ L G + + H N R VL ++ S + I+ AT G+D KD++ V
Sbjct: 270 DDLSVHLSSIGISSAAYHAGLNSKMRSTVLDDWLSSKKQIIVATVAFGMGIDKKDVRMVC 329
Query: 481 NYDFPSSLEDY 491
+++ P S+E +
Sbjct: 330 HFNIPKSMESF 340
>AT1G59990.1 | Symbols: | DEAD/DEAH box helicase, putative (RH22) |
chr1:22094034-22096550 REVERSE
Length = 581
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 83/180 (46%), Gaps = 26/180 (14%)
Query: 181 GFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLAYLLP---ALVHVNAQPRLVQGD--- 234
GF P+ QA P L+G+D+I AETGSGKT YL P L + + +
Sbjct: 99 GFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTNTALDSEVTNREERP 158
Query: 235 ---GPIVLVLAPTRELAVQIQQEAMKFGSRAN---IRITCIYG--GAPKGPQIRDLQRGV 286
I L+L P L Q+ + +R+ + G G P R
Sbjct: 159 FPLKNISLILCPNVMLCEQVVRMVNGLVDEDGNPLLRVEAVCGSQGWP--------DRLP 210
Query: 287 EIVIATPGRLIDMLEAQHTN----LQRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQ 342
+I+++TP L++ +E + L+ V Y+V DEAD +L F+ QI ++++ +R D +
Sbjct: 211 DIIVSTPAALLNNIEPKRNRRLEFLRCVKYVVFDEADMLLCGSFQNQIIRLINMLRFDEK 270
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 99/224 (44%), Gaps = 28/224 (12%)
Query: 329 QIRKIVSQIRPDRQTLYWSATWPREVETLARQFLRNAYKVII---------GSPDLKANH 379
++RKI ++ +Q ++ +AT P + A L++ ++ + SP LK
Sbjct: 344 RVRKIYTR---SKQYIFIAATLPVNGKKTAGGILKHMFQDAVWVSGNFLHRNSPRLK--- 397
Query: 380 CINQVVEVVTDIEKYNRLIKLLKEVMDGG--RILIFMETKKGCDQVTRQLRMEGWPALSI 437
+ VEV D + + LI+ +K + R ++F T + + V L
Sbjct: 398 --QKWVEVTVD-SQVDALIEAVKNNNNTNTERTMVFANTVEAVEAVADILEKASIQCYRY 454
Query: 438 HGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKFVINYDFPSSLEDYVHXXXX 497
H + ER +LA+F+ + TD AARG+DV ++ VI DF SS D++H
Sbjct: 455 HKNHKLDERANILADFRET-GGVFVCTDAAARGVDVPNVSHVIQADFASSAVDFLHRIGR 513
Query: 498 XXXXXXXXXXXXFFTHANAKYARELIKILQDA---GQVVSPALS 538
+T AN R+L++ +++A GQ V A S
Sbjct: 514 TARAGQYGTVTSLYTEAN----RDLVEAIREAVKMGQPVETAFS 553
>AT1G31360.1 | Symbols: RECQL2 | RECQL2 (Arabidopsis RecQ helicase
l2); ATP-dependent helicase/ protein binding |
chr1:11232403-11237393 FORWARD
Length = 705
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 73/318 (22%), Positives = 137/318 (43%), Gaps = 45/318 (14%)
Query: 197 LTGRDLIGIAETGSGKTLAYLLPALVHVNAQPRLVQGDGPIVLVLAPTRELAVQIQQEAM 256
+TGRD++ I G GK+L Y LPA++ G LV++P L IQ + M
Sbjct: 102 MTGRDVLVIMAAGGGKSLCYQLPAMLR-----------GGTTLVVSPLLSL---IQDQVM 147
Query: 257 KFGSR--ANIRITCIYGGAPKGPQIRDLQRG---VEIVIATP------GRLIDMLEAQHT 305
+ + +T G + + L++G ++I+ TP R + LE H
Sbjct: 148 GLAALGISAYMLTSTSGKENEKFVYKALEKGEDDLKILYVTPEKVSKSKRFMSKLEKCH- 206
Query: 306 NLQRVTYLVLDEADRMLDMG--FEPQIRK--IVSQIRPDRQTLYWSATWPREVETLARQF 361
N R++ + +DEA G F P + I+ P + +AT ++V+ +
Sbjct: 207 NAGRLSLISIDEAHCCSQWGHDFRPDYKNLSILKTQFPKVPMVALTATATQKVQNDLIEM 266
Query: 362 LR--NAYKVI--IGSPDL----KANHCINQVVEVVTDIEKYNRLIKLLKEVMDGGRILIF 413
L K + + P+L + + ++V V +I ++ R + + +++
Sbjct: 267 LHIPKCVKFVSSVNRPNLFYSVREKSAVGKLV--VDEIAEFIR-----ESYSNNESGIVY 319
Query: 414 METKKGCDQVTRQLRMEGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDV 473
++K C+Q+ LR G A H D + R+ V + + ++ T G++
Sbjct: 320 CFSRKECEQIAGDLRERGISADYYHADMDANMREKVHMRWSKNKLQVIVGTVAFGMGINK 379
Query: 474 KDIKFVINYDFPSSLEDY 491
D++FVI++ S+E Y
Sbjct: 380 PDVRFVIHHSLSKSMETY 397
>AT1G27880.1 | Symbols: | ATP-dependent DNA helicase, putative |
chr1:9708927-9713888 FORWARD
Length = 911
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 71/332 (21%), Positives = 138/332 (41%), Gaps = 60/332 (18%)
Query: 189 QAQGWPMALTGRDLIGIAETGSGKTLAYLLPALVHVNAQPRLVQGDGPIVLVLAPTRELA 248
Q Q M L G + + TG+GK+L Y +PA++ + G I LV++P L
Sbjct: 274 QLQAIKMILGGSSTMLVLPTGAGKSLCYQIPAMI--------LPG---ITLVVSPLVSLM 322
Query: 249 V-QIQQEAMKFGSRANIRITCIYGGAPKGPQ--------IRDLQRGV-EIVIATPGRL-- 296
+ Q++ + I GG Q +R L+ G+ +++ +P RL
Sbjct: 323 IDQLKHLP-----------SIIKGGLLSSSQRPEEATETLRKLKEGIIKVLFVSPERLLN 371
Query: 297 IDMLEAQHTNLQRVTYLVLDEADRMLD--MGFEPQIRKIVSQIRPDRQTLYWSATWPREV 354
++ L +L V+ +V+DEA + + F P ++ + ++ +S +
Sbjct: 372 VEFLSMFRMSLS-VSLVVVDEAHCVSEWSHNFRPSYMRL-------KASMLFSELKAECI 423
Query: 355 ETLARQFLRNAYKVIIGSPDLKANHCINQV-----VEVVTDIEKYNRLIKLL-------- 401
+ + ++ S ++ + + I + E+ + NR+ LL
Sbjct: 424 LAMTATATTMTLQAVMSSLEIPSTNLIQKSQLRDNFELSVSLSGANRMKDLLILMESPPY 483
Query: 402 KEVMDGGRILIFMETKKGCDQVTRQLRMEGWPALSIHGDKNQAERDWVLAEFKSGRSPIM 461
KE+ I+++ + + D +++ LR A H +R + F S + ++
Sbjct: 484 KEIRS---IIVYCKFQYETDMISKYLRDNNINAKGYHSGLPAKDRVRIQESFCSNKIRVV 540
Query: 462 TATDVAARGLDVKDIKFVINYDFPSSLEDYVH 493
AT GLD D+ VI++ P S+E+YV
Sbjct: 541 VATVAFGMGLDKGDVGAVIHFSVPGSMEEYVQ 572
>AT1G60930.1 | Symbols: RECQL4B, ATRECQ4B | ATRECQ4B/RECQL4B
(ARABIDOPSIS RECQ HELICASE L4B); DNA helicase |
chr1:22435046-22441694 REVERSE
Length = 1043
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%)
Query: 411 LIFMETKKGCDQVTRQLRMEGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARG 470
+I+ ++ C++VT LR+ G A HG + +R +V ++ I+ AT G
Sbjct: 649 IIYCLSRMDCEKVTEALRVFGHKAAFYHGSMDPGKRAFVQKQWSKDEINIICATVAFGMG 708
Query: 471 LDVKDIKFVINYDFPSSLEDY 491
++ D++FVI++ P S+E Y
Sbjct: 709 INKPDVRFVIHHSLPKSIEGY 729
>AT4G35740.2 | Symbols: RecQl3 | RecQl3 (Recq-like 3); ATP binding /
ATP-dependent helicase | chr4:16936793-16940177 FORWARD
Length = 620
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 394 YNRLIKLLKEVMDGGRILIFMETKKGCDQVTRQLRMEGWPALSIHGDKNQAERDWVLAEF 453
Y L LLK + I+ +E + CD ++ L G + + H N R VL ++
Sbjct: 151 YTDLGNLLKSCGNICAIIYCLE-RTTCDDLSVHLSSIGISSAAYHAGLNSKMRSTVLDDW 209
Query: 454 KSGRSPIMTATDVAARGLDVKDIKFVINYDFPSSLEDY 491
S + I+ AT G+D KD++ V +++ P S+E +
Sbjct: 210 LSSKKQIIVATVAFGMGIDKKDVRMVCHFNIPKSMESF 247
>AT3G05740.1 | Symbols: RECQI1 | RECQI1 (Arabidopsis RecQ helicase
l1); ATP-dependent helicase | chr3:1698186-1701234
FORWARD
Length = 606
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 77/322 (23%), Positives = 134/322 (41%), Gaps = 35/322 (10%)
Query: 187 PIQAQGWPMALTGRDLIGIAETGSGKTLAYLLPALVHVNAQPRLVQGDGPIVLVLAPTRE 246
P+Q Q ++ +D + TG GK+L Y LPA + + +V++P
Sbjct: 209 PLQHQACRASMERKDCFVLMPTGGGKSLCYQLPATLKAG-----------VTIVISPLLS 257
Query: 247 LAV-QIQQEAMKFGSRANIRITCIYGGAPKGPQIRDLQR---GVEIVIATPGRLI---DM 299
L QI +KFG A + + +++L+R +++ TP ++
Sbjct: 258 LIQDQIVALNLKFGIPATF-LNSQQTSSQAAAVLQELRRDNPSCKLLYVTPEKIAGSSSF 316
Query: 300 LEAQHTNLQRVTYL---VLDEADRMLDMG--FEPQIRKI--VSQIRPDRQTLYWSATWPR 352
LE L R L V+DEA + G F P R++ + Q P + +AT
Sbjct: 317 LETLRC-LDRKGLLAGFVVDEAHCVSQWGHDFRPDYRELGCLKQNFPRVPVMALTATATE 375
Query: 353 EVETLARQFLRNAYKVIIGSPDLKANHC-INQVVEVVTDI-EKYNRLIKLLKEVMDGGRI 410
V + LR I +P LK + IN EV+ E +L +LL++
Sbjct: 376 SVCQDVLKSLR-----IPRAPVLKMSFDRINLKYEVIVKTKEPLKQLQELLRDRFKDQSG 430
Query: 411 LIFMETKKGCDQVTRQLRMEGW-PALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAAR 469
+++ +K C V + L + + H +R V ++++G I+ AT
Sbjct: 431 IVYCLSKSECVDVAKFLNEKCKVKTVYYHAGVPAKQRVDVQRKWQTGEVRIVCATIAFGM 490
Query: 470 GLDVKDIKFVINYDFPSSLEDY 491
G+D D++FVI+ ++E Y
Sbjct: 491 GIDKADVRFVIHNTLSKAVESY 512
>AT1G31360.2 | Symbols: RECQL2 | RECQL2 (Arabidopsis RecQ helicase
l2) | chr1:11233155-11237393 FORWARD
Length = 580
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 40/81 (49%)
Query: 411 LIFMETKKGCDQVTRQLRMEGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARG 470
+++ ++K C+Q+ LR G A H D + R+ V + + ++ T G
Sbjct: 192 IVYCFSRKECEQIAGDLRERGISADYYHADMDANMREKVHMRWSKNKLQVIVGTVAFGMG 251
Query: 471 LDVKDIKFVINYDFPSSLEDY 491
++ D++FVI++ S+E Y
Sbjct: 252 INKPDVRFVIHHSLSKSMETY 272