Miyakogusa Predicted Gene
- chr4.CM0079.170.nc
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr4.CM0079.170.nc - phase: 0
(445 letters)
Database: TAIR8_pep
32,825 sequences; 13,166,001 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G19130.1 | Symbols: ATRBP47B | ATRBP47B (RNA-BINDING PROTEIN ... 458 e-129
AT1G49600.1 | Symbols: ATRBP47A | ATRBP47A (ARABIDOPSIS THALIANA... 440 e-124
AT1G47490.1 | Symbols: ATRBP47C | ATRBP47C; RNA binding | chr1:1... 398 e-111
AT1G47500.1 | Symbols: ATRBP47C' | ATRBP47C' (RNA-BINDING PROTEI... 396 e-110
AT1G11650.2 | Symbols: ATRBP45B | ATRBP45B; RNA binding | chr1:3... 360 1e-99
AT4G27000.1 | Symbols: ATRBP45C | ATRBP45C; RNA binding | chr4:1... 347 6e-96
AT5G19350.2 | Symbols: | RNA-binding protein 45 (RBP45), putati... 345 4e-95
AT5G54900.1 | Symbols: ATRBP45A | ATRBP45A (RNA-BINDING PROTEIN ... 344 7e-95
AT5G19350.1 | Symbols: | RNA-binding protein 45 (RBP45), putati... 339 2e-93
AT1G11650.1 | Symbols: ATRBP45B | ATRBP45B; RNA binding | chr1:3... 320 8e-88
AT1G47490.2 | Symbols: ATRBP47C | ATRBP47C; RNA binding | chr1:1... 271 5e-73
AT1G54080.1 | Symbols: UBP1A | UBP1A; mRNA 3'-UTR binding | chr1... 149 3e-36
AT3G14100.1 | Symbols: | oligouridylate-binding protein, putati... 147 2e-35
AT1G54080.2 | Symbols: UBP1A | UBP1A; mRNA 3'-UTR binding | chr1... 145 7e-35
AT1G17370.1 | Symbols: UBP1B | UBP1B (OLIGOURIDYLATE BINDING PRO... 141 7e-34
AT1G17370.2 | Symbols: UBP1B | UBP1B (OLIGOURIDYLATE BINDING PRO... 139 4e-33
AT2G23350.1 | Symbols: PAB4 | PAB4 (POLY(A) BINDING PROTEIN 4); ... 107 1e-23
AT2G36660.1 | Symbols: PAB7 | PAB7 (POLY(A) BINDING PROTEIN 7); ... 106 4e-23
AT1G71770.1 | Symbols: PAB5 | PAB5 (POLY(A)-BINDING PROTEIN); RN... 100 1e-21
AT1G49760.1 | Symbols: PAB8 | PAB8 (POLY(A) BINDING PROTEIN 8); ... 97 2e-20
AT1G22760.1 | Symbols: PAB3 | PAB3 (POLY(A) BINDING PROTEIN 3); ... 97 2e-20
AT1G34140.1 | Symbols: PAB1 | PAB1 (POLY(A) BINDING PROTEIN 1); ... 96 3e-20
AT3G16380.1 | Symbols: PAB6 | PAB6 (POLY(A) BINDING PROTEIN 6); ... 84 2e-16
AT4G24770.1 | Symbols: ATRBP31, CP31, ATRBP33, RBP31 | RBP31 (31... 84 2e-16
AT5G50250.1 | Symbols: | 31 kDa ribonucleoprotein, chloroplast,... 84 2e-16
AT3G52380.1 | Symbols: PDE322, CP33 | CP33 (PIGMENT DEFECTIVE 32... 80 2e-15
AT2G18510.1 | Symbols: EMB2444 | EMB2444 (EMBRYO DEFECTIVE 2444)... 80 3e-15
AT1G60000.1 | Symbols: | 29 kDa ribonucleoprotein, chloroplast,... 77 3e-14
AT4G34110.1 | Symbols: PABP2, PAB2 | PAB2 (POLY(A) BINDING PROTE... 73 5e-13
AT2G37220.1 | Symbols: | 29 kDa ribonucleoprotein, chloroplast,... 72 6e-13
AT3G13224.2 | Symbols: | RNA recognition motif (RRM)-containing... 72 8e-13
AT3G04500.1 | Symbols: | RNA recognition motif (RRM)-containing... 71 1e-12
AT4G26650.2 | Symbols: | RNA recognition motif (RRM)-containing... 69 5e-12
AT4G26650.1 | Symbols: | RNA recognition motif (RRM)-containing... 69 5e-12
AT5G40490.1 | Symbols: | RNA recognition motif (RRM)-containing... 69 6e-12
AT1G07360.1 | Symbols: | zinc finger (CCCH-type) family protein... 67 2e-11
AT2G33410.1 | Symbols: | heterogeneous nuclear ribonucleoprotei... 65 7e-11
AT2G29580.1 | Symbols: | zinc finger (CCCH-type) family protein... 65 1e-10
AT1G17640.1 | Symbols: | RNA recognition motif (RRM)-containing... 64 2e-10
AT5G47620.2 | Symbols: | heterogeneous nuclear ribonucleoprotei... 64 2e-10
AT5G47620.1 | Symbols: | heterogeneous nuclear ribonucleoprotei... 64 2e-10
AT4G16280.3 | Symbols: FCA | FCA; RNA binding | chr4:9208580-921... 64 2e-10
AT4G00830.2 | Symbols: | RNA recognition motif (RRM)-containing... 64 2e-10
AT4G00830.1 | Symbols: | RNA recognition motif (RRM)-containing... 64 2e-10
AT4G16280.2 | Symbols: FCA | FCA; RNA binding | chr4:9207180-921... 64 3e-10
AT3G07810.2 | Symbols: | heterogeneous nuclear ribonucleoprotei... 63 3e-10
AT3G07810.1 | Symbols: | heterogeneous nuclear ribonucleoprotei... 63 3e-10
AT3G13224.1 | Symbols: | RNA recognition motif (RRM)-containing... 63 4e-10
AT5G55550.1 | Symbols: | RNA recognition motif (RRM)-containing... 63 4e-10
AT5G55550.2 | Symbols: | RNA recognition motif (RRM)-containing... 63 5e-10
AT5G55550.3 | Symbols: | RNA recognition motif (RRM)-containing... 63 5e-10
AT1G48920.1 | Symbols: ATNUC-L1, PARL1 | ATNUC-L1/PARL1 (PARALLE... 62 8e-10
AT4G13850.3 | Symbols: GR-RBP2, GRP2, ATGRP2 | ATGRP2 (GLYCINE-R... 61 1e-09
AT4G13850.2 | Symbols: GR-RBP2, GRP2, ATGRP2 | ATGRP2 (GLYCINE-R... 61 1e-09
AT4G13850.1 | Symbols: GR-RBP2, GRP2, ATGRP2 | ATGRP2 (GLYCINE-R... 61 1e-09
AT4G13850.4 | Symbols: GR-RBP2, GRP2, ATGRP2 | ATGRP2 (GLYCINE-R... 61 1e-09
AT4G14300.1 | Symbols: | heterogeneous nuclear ribonucleoprotei... 60 2e-09
AT1G58470.1 | Symbols: RBP1, XF41, ATRBP1 | ATRBP1 (ARABIDOPSIS ... 60 3e-09
AT2G16940.1 | Symbols: | RNA recognition motif (RRM)-containing... 59 5e-09
AT5G04280.1 | Symbols: | glycine-rich RNA-binding protein | chr... 59 5e-09
AT5G09880.1 | Symbols: | RNA recognition motif (RRM)-containing... 59 5e-09
AT3G52150.2 | Symbols: | RNA recognition motif (RRM)-containing... 58 1e-08
AT3G52150.1 | Symbols: | RNA recognition motif (RRM)-containing... 58 1e-08
AT1G45100.1 | Symbols: | polyadenylate-binding protein, putativ... 57 2e-08
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | GR-RBP4/GRP4 (GLYCINE-RIC... 57 3e-08
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | GR-RBP4/GRP4 (GLYCINE-RIC... 57 3e-08
AT2G41060.2 | Symbols: | RNA recognition motif (RRM)-containing... 57 3e-08
AT2G41060.1 | Symbols: | RNA recognition motif (RRM)-containing... 57 3e-08
AT5G19960.1 | Symbols: | RNA recognition motif (RRM)-containing... 57 3e-08
AT3G13570.1 | Symbols: SCL30a | SCL30a (SC35-like splicing facto... 56 4e-08
AT2G35410.1 | Symbols: | 33 kDa ribonucleoprotein, chloroplast,... 56 5e-08
AT4G39260.3 | Symbols: GR-RBP8, ATGRP8, CCR1 | ATGRP8/GR-RBP8 (C... 55 1e-07
AT5G61030.1 | Symbols: GR-RBP3 | GR-RBP3 (glycine-rich RNA-bindi... 55 1e-07
AT1G60650.2 | Symbols: | glycine-rich RNA-binding protein, puta... 55 1e-07
AT1G60650.1 | Symbols: | glycine-rich RNA-binding protein, puta... 55 1e-07
AT4G39260.2 | Symbols: GR-RBP8, ATGRP8, CCR1 | ATGRP8/GR-RBP8 (C... 54 3e-07
AT4G39260.1 | Symbols: GR-RBP8, ATGRP8, CCR1 | ATGRP8/GR-RBP8 (C... 54 3e-07
AT1G01080.1 | Symbols: | 33 kDa ribonucleoprotein, chloroplast,... 54 3e-07
AT5G25060.1 | Symbols: | RNA recognition motif (RRM)-containing... 53 4e-07
AT5G10800.1 | Symbols: | RNA recognition motif (RRM)-containing... 53 5e-07
AT4G03110.1 | Symbols: | RNA-binding protein, putative | chr4:1... 52 5e-07
AT1G78260.1 | Symbols: | RNA recognition motif (RRM)-containing... 52 6e-07
AT4G03110.2 | Symbols: | RNA-binding protein, putative | chr4:1... 52 8e-07
AT5G06210.1 | Symbols: | RNA-binding protein, putative | chr5:1... 52 8e-07
AT3G53460.2 | Symbols: CP29 | CP29 (chloroplast 29 kDa ribonucle... 52 8e-07
AT3G53460.1 | Symbols: CP29 | CP29 (chloroplast 29 kDa ribonucle... 52 8e-07
AT2G46780.1 | Symbols: | RNA recognition motif (RRM)-containing... 52 9e-07
AT3G08000.1 | Symbols: | RNA-binding protein, putative | chr3:2... 52 1e-06
AT1G78260.2 | Symbols: | RNA recognition motif (RRM)-containing... 52 1e-06
AT1G01080.2 | Symbols: | 33 kDa ribonucleoprotein, chloroplast,... 51 1e-06
AT3G11400.1 | Symbols: ATEIF3G1, EIF3G1 | EIF3G1 (eukaryotic tra... 51 2e-06
AT2G42890.1 | Symbols: AML2 | AML2; RNA binding | chr2:17857154-... 51 2e-06
AT2G42890.3 | Symbols: AML2 | AML2 | chr2:17857709-17861282 FORWARD 51 2e-06
AT2G42890.2 | Symbols: AML2 | AML2; RNA binding | chr2:17857709-... 51 2e-06
AT4G39260.4 | Symbols: GR-RBP8, ATGRP8, CCR1 | ATGRP8/GR-RBP8 (C... 51 2e-06
AT5G51300.3 | Symbols: | splicing factor-related | chr5:2086710... 50 2e-06
AT5G51300.2 | Symbols: | splicing factor-related | chr5:2086710... 50 2e-06
AT5G51300.1 | Symbols: | splicing factor-related | chr5:2086710... 50 2e-06
AT1G74230.1 | Symbols: GR-RBP5 | GR-RBP5 (glycine-rich RNA-bindi... 50 2e-06
AT1G76460.1 | Symbols: | RNA recognition motif (RRM)-containing... 50 2e-06
AT5G41690.1 | Symbols: | RNA binding | chr5:16687354-16691417 R... 50 3e-06
AT1G55310.2 | Symbols: ATSCL33, SCL33, SR33 | SR33 (SC35-like sp... 50 3e-06
AT1G22330.1 | Symbols: | RNA binding | chr1:7886682-7889230 FOR... 50 3e-06
AT1G55310.1 | Symbols: ATSCL33, SCL33, SR33 | SR33 (SC35-like sp... 50 3e-06
AT1G60900.1 | Symbols: | U2 snRNP auxiliary factor large subuni... 50 3e-06
AT1G20880.1 | Symbols: | RNA recognition motif (RRM)-containing... 50 4e-06
AT3G26420.1 | Symbols: ATRZ-1A | ATRZ-1A; RNA binding / nucleoti... 50 4e-06
AT1G03457.1 | Symbols: | RNA-binding protein, putative | chr1:8... 50 4e-06
AT4G19610.1 | Symbols: | RNA binding | chr4:10677492-10681633 F... 50 4e-06
AT3G18610.1 | Symbols: ATRANGAP1 | ATRANGAP1 (RAN GTPASE-ACTIVAT... 49 5e-06
AT3G46020.1 | Symbols: | RNA-binding protein, putative | chr3:1... 49 5e-06
AT2G44710.1 | Symbols: | RNA recognition motif (RRM)-containing... 49 7e-06
AT3G56860.2 | Symbols: UBA2A | UBA2A; AU-rich element binding / ... 49 8e-06
AT3G56860.1 | Symbols: UBA2A | UBA2A; RNA binding | chr3:2106168... 49 8e-06
AT3G56860.3 | Symbols: UBA2A | UBA2A; RNA binding | chr3:2106168... 49 8e-06
AT1G03457.2 | Symbols: | RNA-binding protein, putative | chr1:8... 49 8e-06
AT2G37510.1 | Symbols: | RNA-binding protein, putative | chr2:1... 49 9e-06
AT1G13690.1 | Symbols: ATE1 | ATE1 (ATPase E1); nucleic acid bin... 49 9e-06
AT3G52660.2 | Symbols: | RNA recognition motif (RRM)-containing... 48 1e-05
AT3G52660.1 | Symbols: | RNA recognition motif (RRM)-containing... 48 1e-05
AT1G02840.3 | Symbols: ATSRP34, SRP34, SR1 | SR1 (splicing facto... 48 1e-05
AT1G02840.1 | Symbols: ATSRP34, SRP34, SR1 | SR1 (splicing facto... 48 1e-05
AT4G09040.1 | Symbols: | RNA recognition motif (RRM)-containing... 48 2e-05
AT1G02840.2 | Symbols: ATSRP34, SRP34, SR1 | SR1 (splicing facto... 47 2e-05
AT2G21660.2 | Symbols: GR-RBP7, GRP7, CCR2, ATGRP7 | ATGRP7 (COL... 47 2e-05
AT2G21660.1 | Symbols: GR-RBP7, GRP7, CCR2, ATGRP7 | ATGRP7 (COL... 47 2e-05
AT4G09040.2 | Symbols: | RNA recognition motif (RRM)-containing... 47 2e-05
AT4G36960.1 | Symbols: | RNA recognition motif (RRM)-containing... 47 2e-05
AT1G71800.1 | Symbols: | cleavage stimulation factor, putative ... 47 3e-05
AT4G18120.2 | Symbols: AML3 | AML3 (ARABIDOPSIS MEI2-LIKE) | chr... 46 5e-05
AT4G18120.1 | Symbols: AML3 | AML3 (ARABIDOPSIS MEI2-LIKE); RNA ... 46 5e-05
AT5G06000.1 | Symbols: ATEIF3G2, EIF3G2 | EIF3G2 (eukaryotic tra... 46 5e-05
AT1G33470.1 | Symbols: | RNA recognition motif (RRM)-containing... 46 5e-05
AT1G33470.2 | Symbols: | RNA recognition motif (RRM)-containing... 46 5e-05
AT3G26120.1 | Symbols: TEL1 | TEL1 (TERMINAL EAR1-LIKE 1); RNA b... 45 6e-05
AT3G27700.2 | Symbols: | RNA recognition motif (RRM)-containing... 45 7e-05
AT3G27700.1 | Symbols: | RNA recognition motif (RRM)-containing... 45 7e-05
AT5G47320.1 | Symbols: RPS19 | RPS19 (40S ribosomal protein S19)... 45 8e-05
AT1G29400.2 | Symbols: AML5 | AML5 (ARABIDOPSIS MEI2-LIKE PROTEI... 45 8e-05
AT1G29400.1 | Symbols: AML5 | AML5 (ARABIDOPSIS MEI2-LIKE PROTEI... 45 8e-05
AT2G46610.1 | Symbols: | arginine/serine-rich splicing factor, ... 45 1e-04
AT4G02430.2 | Symbols: | pre-mRNA splicing factor, putative / S... 44 1e-04
AT1G09140.2 | Symbols: ATSRP30, ATSRP30.1, ATSRP30.2 | ATSRP30.1... 44 1e-04
AT1G09140.1 | Symbols: ATSRP30, ATSRP30.1, ATSRP30.2 | ATSRP30.1... 44 1e-04
AT4G02430.1 | Symbols: | pre-mRNA splicing factor, putative / S... 44 2e-04
AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing... 44 2e-04
AT3G15010.2 | Symbols: | RNA recognition motif (RRM)-containing... 44 2e-04
AT3G15010.1 | Symbols: | RNA recognition motif (RRM)-containing... 44 2e-04
AT4G13860.1 | Symbols: | glycine-rich RNA-binding protein, puta... 44 3e-04
AT5G47620.3 | Symbols: | heterogeneous nuclear ribonucleoprotei... 44 3e-04
AT4G36690.1 | Symbols: ATU2AF65A | ATU2AF65A; RNA binding | chr4... 44 3e-04
AT2G43370.1 | Symbols: | U1 small nuclear ribonucleoprotein 70 ... 43 4e-04
AT3G54770.1 | Symbols: | RNA recognition motif (RRM)-containing... 43 4e-04
AT5G11412.1 | Symbols: | nucleic acid binding / nucleotide bind... 43 4e-04
AT5G54580.1 | Symbols: | RNA recognition motif (RRM)-containing... 43 5e-04
AT1G51510.1 | Symbols: Y14 | Y14; RNA binding / protein binding ... 42 6e-04
AT1G13190.1 | Symbols: | RNA recognition motif (RRM)-containing... 42 7e-04
AT2G27330.1 | Symbols: | RNA recognition motif (RRM)-containing... 42 7e-04
AT1G18630.1 | Symbols: GR-RBP6 | GR-RBP6 (glycine-rich RNA-bindi... 42 8e-04
AT5G44200.2 | Symbols: ATCBP20, CBP20 | CBP20 (CAP-BINDING PROTE... 42 0.001
AT5G44200.1 | Symbols: ATCBP20, CBP20 | CBP20 (CAP-BINDING PROTE... 42 0.001
>AT3G19130.1 | Symbols: ATRBP47B | ATRBP47B (RNA-BINDING PROTEIN
47B); RNA binding | chr3:6611404-6613829 REVERSE
Length = 435
Score = 458 bits (1179), Expect = e-129, Method: Compositional matrix adjust.
Identities = 215/301 (71%), Positives = 252/301 (83%), Gaps = 2/301 (0%)
Query: 110 GDEIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAE 169
GD+++T+W+GDL HWMDE Y+H+CF+HTGEV S KVIRNK T QSEGYGFVEF SRA AE
Sbjct: 104 GDDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAE 163
Query: 170 KVLQNFNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFG 229
+VLQN++G++MPN+DQ FR+NWASFS GE+R+ DLS+FVGDL+ DVTD +L ETF
Sbjct: 164 EVLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFS 223
Query: 230 SRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKK 289
R+ S+K AKVVIDSNTGRSKGYGFVRFGDENER+RA+TEMNG +CSNR MRVG+ATPK+
Sbjct: 224 DRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKR 283
Query: 290 TYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFL 349
AV+LAGGH SNG++ GSQSDG+S N TIFVGG+D D+ DEDLRQPF
Sbjct: 284 AIA-NQQQHSSQAVILAGGHGSNGSMGYGSQSDGESTNATIFVGGIDPDVIDEDLRQPFS 342
Query: 350 QFGDVVSVKIPVGKGCGFVQFADRKNAEEAIHALNGTVIGKQTVRLSWGRSPGNKHWRSD 409
QFG+VVSVKIPVGKGCGFVQFADRK+AE+AI +LNGTVIGK TVRLSWGRSP NK WR D
Sbjct: 343 QFGEVVSVKIPVGKGCGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWGRSP-NKQWRGD 401
Query: 410 S 410
S
Sbjct: 402 S 402
>AT1G49600.1 | Symbols: ATRBP47A | ATRBP47A (ARABIDOPSIS THALIANA
RNA-BINDING PROTEIN 47A); RNA binding |
chr1:18360904-18363818 REVERSE
Length = 445
Score = 440 bits (1131), Expect = e-124, Method: Compositional matrix adjust.
Identities = 218/329 (66%), Positives = 252/329 (76%), Gaps = 11/329 (3%)
Query: 110 GDEIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAE 169
GD+++T+W+GDL HWMDE Y+H CF+HT EV S KVIRNKQT QSEGYGFVEF SR+ AE
Sbjct: 115 GDDVKTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAE 174
Query: 170 KVLQNFNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFG 229
+ LQ+F+G MPN +Q FRLNWASFS GE+R+ DLSIFVGDLA DV+DA+L ETF
Sbjct: 175 EALQSFSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFA 234
Query: 230 SRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKK 289
R+ S+KGAKVVIDSNTGRSKGYGFVRFGDENER+RAMTEMNG FCS+R MRVG+ATPK+
Sbjct: 235 GRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKR 294
Query: 290 --TYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQP 347
YG A+ LAGGH N GS SDG+SNN+TIFVGGLD+D+++EDL QP
Sbjct: 295 AAAYG---QQNGSQALTLAGGHGGN-----GSMSDGESNNSTIFVGGLDADVTEEDLMQP 346
Query: 348 FLQFGDVVSVKIPVGKGCGFVQFADRKNAEEAIHALNGTVIGKQTVRLSWGRSPGNKHWR 407
F FG+VVSVKIPVGKGCGFVQFA+R++AEEAI LNGTVIGK TVRLSWGRSP NK WR
Sbjct: 347 FSDFGEVVSVKIPVGKGCGFVQFANRQSAEEAIGNLNGTVIGKNTVRLSWGRSP-NKQWR 405
Query: 408 SDSNXXXXXXXXXXXXXXXARQNQDMGMH 436
SDS NQD M+
Sbjct: 406 SDSGNQWNGGYSRGQGYNNGYANQDSNMY 434
>AT1G47490.1 | Symbols: ATRBP47C | ATRBP47C; RNA binding |
chr1:17427241-17429622 FORWARD
Length = 432
Score = 398 bits (1022), Expect = e-111, Method: Compositional matrix adjust.
Identities = 195/298 (65%), Positives = 230/298 (77%), Gaps = 15/298 (5%)
Query: 112 EIRTIWLGDLHHWMDENYVHNCFAH--TGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAE 169
E +TIW+GDLHHWMDE Y+++ FA E+VS KVIRNK G SEGYGFVEF S A+
Sbjct: 99 ENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVAD 158
Query: 170 KVLQNFNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFG 229
KVL+ FNGT MPNTDQ FRLNWASFS GE+R E DLSIFVGDL+ DV+D +L ETF
Sbjct: 159 KVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFS 218
Query: 230 SRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKK 289
++ S+K AKVV+D+NTGRSKGYGFVRFGDENERT+AMTEMNGV CS+R MR+G ATP+K
Sbjct: 219 EKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRK 278
Query: 290 TYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFL 349
T G GG+ NG + ++ +GD NTTIFVGGLDS ++DEDL+QPF
Sbjct: 279 TNGYQQ----------QGGYMPNGTL---TRPEGDIMNTTIFVGGLDSSVTDEDLKQPFN 325
Query: 350 QFGDVVSVKIPVGKGCGFVQFADRKNAEEAIHALNGTVIGKQTVRLSWGRSPGNKHWR 407
+FG++VSVKIPVGKGCGFVQF +R NAEEA+ LNGTVIGKQTVRLSWGR+P NK R
Sbjct: 326 EFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPR 383
>AT1G47500.1 | Symbols: ATRBP47C' | ATRBP47C' (RNA-BINDING PROTEIN
47C'); RNA binding | chr1:17435122-17437245 FORWARD
Length = 434
Score = 396 bits (1018), Expect = e-110, Method: Compositional matrix adjust.
Identities = 196/298 (65%), Positives = 231/298 (77%), Gaps = 15/298 (5%)
Query: 112 EIRTIWLGDLHHWMDENYVHNCF--AHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAE 169
E +TIW+GDL +WMDE Y+++ F A E+VS KVIRNK G SEGYGFVEF S A+
Sbjct: 101 ENKTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVAD 160
Query: 170 KVLQNFNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFG 229
KVLQ FNG MPNTDQ FRLNWASFS GE+R E DLSIFVGDLA DV+DA+L ETF
Sbjct: 161 KVLQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFS 220
Query: 230 SRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKK 289
++ S+K AKVV+D+NTGRSKGYGFVRFGDENERT+AMTEMNGV CS+R MR+G ATP+K
Sbjct: 221 EKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRK 280
Query: 290 TYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFL 349
T G GG+ +GA ++S+GD+ NTTIFVGGLDS ++DEDL+QPF
Sbjct: 281 TNGYQQQ----------GGYMPSGAF---TRSEGDTINTTIFVGGLDSSVTDEDLKQPFS 327
Query: 350 QFGDVVSVKIPVGKGCGFVQFADRKNAEEAIHALNGTVIGKQTVRLSWGRSPGNKHWR 407
+FG++VSVKIPVGKGCGFVQF +R NAEEA+ LNGTVIGKQTVRLSWGR+P NK R
Sbjct: 328 EFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPR 385
>AT1G11650.2 | Symbols: ATRBP45B | ATRBP45B; RNA binding |
chr1:3914895-3917941 FORWARD
Length = 405
Score = 360 bits (923), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 175/296 (59%), Positives = 217/296 (73%), Gaps = 17/296 (5%)
Query: 111 DEIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEK 170
DEIRT+W+GDL +WMDEN+++ CFAHTGE+VSAKVIRNKQTGQ EGYGF+EF S A AE+
Sbjct: 59 DEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAER 118
Query: 171 VLQNFNGTMMPN-TDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFG 229
VLQ FN +P+ DQ FRLNWAS S+G++R + + D +IFVGDLA DVTD +L ETF
Sbjct: 119 VLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDD--SPDYTIFVGDLAADVTDYILLETFR 176
Query: 230 SRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKK 289
+ + S+KGAKVVID TGR+KGYGFVRF DE+E+ RAMTEMNGV CS RPMR+G A KK
Sbjct: 177 ASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKK 236
Query: 290 TYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFL 349
+ G S + A G +D D NNTT+FVGGLD+ ++D+ L+ F
Sbjct: 237 G--------------VTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVFS 282
Query: 350 QFGDVVSVKIPVGKGCGFVQFADRKNAEEAIHALNGTVIGKQTVRLSWGRSPGNKH 405
Q+G++V VKIP GK CGFVQF+++ AEEA+ LNG +G TVRLSWGRSP NK
Sbjct: 283 QYGEIVHVKIPAGKRCGFVQFSEKSCAEEALRMLNGVQLGGTTVRLSWGRSPSNKQ 338
>AT4G27000.1 | Symbols: ATRBP45C | ATRBP45C; RNA binding |
chr4:13554989-13557769 REVERSE
Length = 415
Score = 347 bits (891), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 168/298 (56%), Positives = 211/298 (70%), Gaps = 16/298 (5%)
Query: 112 EIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKV 171
EIR++W+GDL WMDENY+ N F TGE +AKVIRNKQ G SEGYGF+EF + ATAE+
Sbjct: 78 EIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERN 137
Query: 172 LQNFNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSR 231
LQ +NG MP+++QAFRLNWA AGERR +A + ++FVGDLA DVTD ML ETF +
Sbjct: 138 LQTYNGAPMPSSEQAFRLNWAQLGAGERR-QAEGPEHTVFVGDLAPDVTDHMLTETFKAV 196
Query: 232 FSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTY 291
+SS+KGAKVV D TGRSKGYGFVRF DE+E+ RAMTEMNG +CS+RPMR G A KK
Sbjct: 197 YSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPL 256
Query: 292 GXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQF 351
P++ QG+ + D NTTIFVG +D ++++DL+ F QF
Sbjct: 257 TM---------------QPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQF 301
Query: 352 GDVVSVKIPVGKGCGFVQFADRKNAEEAIHALNGTVIGKQTVRLSWGRSPGNKHWRSD 409
G++V VKIP GK CGFVQ+A+R AE+A+ LNGT +G Q++RLSWGRSP NK + D
Sbjct: 302 GELVHVKIPAGKRCGFVQYANRACAEQALSVLNGTQLGGQSIRLSWGRSPSNKQTQPD 359
>AT5G19350.2 | Symbols: | RNA-binding protein 45 (RBP45), putative
| chr5:6518980-6521297 FORWARD
Length = 421
Score = 345 bits (884), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 161/301 (53%), Positives = 210/301 (69%), Gaps = 5/301 (1%)
Query: 111 DEIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEK 170
+E+RT+W+GDL +W+DENY+ +CF+ TGE+VS KVIRNK TGQ EGYGF+EF S A AE+
Sbjct: 21 EEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAER 80
Query: 171 VLQNFNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGS 230
LQ +NGT MP T+ FRLNWASF +G++ A D SIFVGDLA DVTD +LQETF
Sbjct: 81 TLQTYNGTQMPGTELTFRLNWASFGSGQKVD--AGPDHSIFVGDLAPDVTDYLLQETFRV 138
Query: 231 RFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKT 290
+SS++GAKVV D +TGRSKGYGFV+F +E+ER RAM EMNG++CS RPMR+ ATPKK
Sbjct: 139 HYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKN 198
Query: 291 YGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQ 350
G V A P VA + D TTI V LD ++++E+L++ F Q
Sbjct: 199 VGVQQQYVTKVTVPSAVAAPVQAYVA---PPESDVTCTTISVANLDQNVTEEELKKAFSQ 255
Query: 351 FGDVVSVKIPVGKGCGFVQFADRKNAEEAIHALNGTVIGKQTVRLSWGRSPGNKHWRSDS 410
G+V+ VKIP KG G+VQF R +AEEA+ + G VIG+Q VR+SW ++PG W + +
Sbjct: 256 LGEVIYVKIPATKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSKNPGQDGWVTQA 315
Query: 411 N 411
+
Sbjct: 316 D 316
>AT5G54900.1 | Symbols: ATRBP45A | ATRBP45A (RNA-BINDING PROTEIN
45A); RNA binding | chr5:22312638-22315352 FORWARD
Length = 387
Score = 344 bits (882), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 163/294 (55%), Positives = 210/294 (71%), Gaps = 22/294 (7%)
Query: 112 EIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKV 171
+++++W+GDL WMDENY+ + FA +GE SAKVIRNK TGQSEGYGF+EF S + AE+V
Sbjct: 58 DVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERV 117
Query: 172 LQNFNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSR 231
LQ +NG MP+T+Q FRLNWA AGE+R + D +IFVGDLA +VTD ML +TF +
Sbjct: 118 LQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNV 177
Query: 232 FSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTY 291
+ S+KGAKVV+D TGRSKGYGFVRF DENE+ RAMTEMNG +CS RPMR+G A K
Sbjct: 178 YGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANKNAL 237
Query: 292 GXXXXXXXXXAVVLAGGHPSNGAVAQGSQ----SDGDSNNTTIFVGGLDSDISDEDLRQP 347
P A+ Q +Q D D NNTTIFVGGLD++++D++L+
Sbjct: 238 ------------------PMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSI 279
Query: 348 FLQFGDVVSVKIPVGKGCGFVQFADRKNAEEAIHALNGTVIGKQTVRLSWGRSP 401
F QFG+++ VKIP GK CGFVQ+A++ +AE A+ LNGT +G Q++RLSWGRSP
Sbjct: 280 FGQFGELLHVKIPPGKRCGFVQYANKASAEHALSVLNGTQLGGQSIRLSWGRSP 333
>AT5G19350.1 | Symbols: | RNA-binding protein 45 (RBP45), putative
| chr5:6518980-6521297 FORWARD
Length = 425
Score = 339 bits (870), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 161/305 (52%), Positives = 210/305 (68%), Gaps = 9/305 (2%)
Query: 111 DEIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEK 170
+E+RT+W+GDL +W+DENY+ +CF+ TGE+VS KVIRNK TGQ EGYGF+EF S A AE+
Sbjct: 21 EEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAER 80
Query: 171 VLQNFNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGS 230
LQ +NGT MP T+ FRLNWASF +G++ A D SIFVGDLA DVTD +LQETF
Sbjct: 81 TLQTYNGTQMPGTELTFRLNWASFGSGQKVD--AGPDHSIFVGDLAPDVTDYLLQETFRV 138
Query: 231 RFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKT 290
+SS++GAKVV D +TGRSKGYGFV+F +E+ER RAM EMNG++CS RPMR+ ATPKK
Sbjct: 139 HYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKN 198
Query: 291 YGXXXXXXXXXA----VVLAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQ 346
G V A P VA + D TTI V LD ++++E+L++
Sbjct: 199 VGVQQQYVTKAVYPVTVPSAVAAPVQAYVA---PPESDVTCTTISVANLDQNVTEEELKK 255
Query: 347 PFLQFGDVVSVKIPVGKGCGFVQFADRKNAEEAIHALNGTVIGKQTVRLSWGRSPGNKHW 406
F Q G+V+ VKIP KG G+VQF R +AEEA+ + G VIG+Q VR+SW ++PG W
Sbjct: 256 AFSQLGEVIYVKIPATKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSKNPGQDGW 315
Query: 407 RSDSN 411
+ ++
Sbjct: 316 VTQAD 320
>AT1G11650.1 | Symbols: ATRBP45B | ATRBP45B; RNA binding |
chr1:3914895-3917301 FORWARD
Length = 306
Score = 320 bits (821), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 155/265 (58%), Positives = 195/265 (73%), Gaps = 17/265 (6%)
Query: 110 GDEIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAE 169
DEIRT+W+GDL +WMDEN+++ CFAHTGE+VSAKVIRNKQTGQ EGYGF+EF S A AE
Sbjct: 58 ADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAE 117
Query: 170 KVLQNFNGTMMPN-TDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETF 228
+VLQ FN +P+ DQ FRLNWAS S+G++R + + D +IFVGDLA DVTD +L ETF
Sbjct: 118 RVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDD--SPDYTIFVGDLAADVTDYILLETF 175
Query: 229 GSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPK 288
+ + S+KGAKVVID TGR+KGYGFVRF DE+E+ RAMTEMNGV CS RPMR+G A K
Sbjct: 176 RASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASK 235
Query: 289 KTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPF 348
K + G S + A G +D D NNTT+FVGGLD+ ++D+ L+ F
Sbjct: 236 KG--------------VTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVTDDHLKNVF 281
Query: 349 LQFGDVVSVKIPVGKGCGFVQFADR 373
Q+G++V VKIP GK CGFVQF+++
Sbjct: 282 SQYGEIVHVKIPAGKRCGFVQFSEK 306
>AT1G47490.2 | Symbols: ATRBP47C | ATRBP47C; RNA binding |
chr1:17427241-17428554 FORWARD
Length = 310
Score = 271 bits (694), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 136/223 (60%), Positives = 163/223 (73%), Gaps = 15/223 (6%)
Query: 112 EIRTIWLGDLHHWMDENYVHNCFAH--TGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAE 169
E +TIW+GDLHHWMDE Y+++ FA E+VS KVIRNK G SEGYGFVEF S A+
Sbjct: 99 ENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVAD 158
Query: 170 KVLQNFNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFG 229
KVL+ FNGT MPNTDQ FRLNWASFS GE+R E DLSIFVGDL+ DV+D +L ETF
Sbjct: 159 KVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFS 218
Query: 230 SRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKK 289
++ S+K AKVV+D+NTGRSKGYGFVRFGDENERT+AMTEMNGV CS+R MR+G ATP+K
Sbjct: 219 EKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRK 278
Query: 290 TYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTTIFV 332
T G GG+ NG + ++ +GD NTT+ V
Sbjct: 279 TNGYQQ----------QGGYMPNGTL---TRPEGDIMNTTVIV 308
>AT1G54080.1 | Symbols: UBP1A | UBP1A; mRNA 3'-UTR binding |
chr1:20187591-20190492 REVERSE
Length = 426
Score = 149 bits (376), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 100/296 (33%), Positives = 156/296 (52%), Gaps = 19/296 (6%)
Query: 113 IRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVL 172
R+++ G++H + E + FA TG + S K+IR ++ YGFV ++ R A +
Sbjct: 62 CRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS----YGFVHYFDRRCASMAI 117
Query: 173 QNFNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRF 232
NG + Q ++NWA ++ G+R E +S +IFVGDL+ +VTDA L ++F S F
Sbjct: 118 MTLNGRHI--FGQPMKVNWA-YATGQR--EDTSSHFNIFVGDLSPEVTDAALFDSF-SAF 171
Query: 233 SSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYG 292
+S A+V+ D TGRS+G+GFV F ++ + A+ EMNG + S+R +R AT T+G
Sbjct: 172 NSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWATKGATFG 231
Query: 293 XXXXXXXXXAVV-LAGGHPSNGAVAQGSQSDGDSNN---TTIFVGGLDSDISDEDLRQPF 348
+VV L G +G + S D NN TT++VG L +++ DL + F
Sbjct: 232 EDKHSSDGKSVVELTNGSSEDG--RELSNEDAPENNPQFTTVYVGNLSPEVTQLDLHRLF 289
Query: 349 LQFGD--VVSVKIPVGKGCGFVQFADRKNAEEAIHALNG-TVIGKQTVRLSWGRSP 401
G + V++ KG GFV++ A AI N + + +R SWG P
Sbjct: 290 YTLGAGVIEEVRVQRDKGFGFVRYNTHDEAALAIQMGNAQPFLFSRQIRCSWGNKP 345
>AT3G14100.1 | Symbols: | oligouridylate-binding protein, putative
| chr3:4673034-4675957 FORWARD
Length = 427
Score = 147 bits (370), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 159/293 (54%), Gaps = 15/293 (5%)
Query: 114 RTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQ 173
R++++G++H + E + F TG V S+K+IR ++ YGFV ++ R +A +
Sbjct: 59 RSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS----YGFVHYFDRRSAALAIL 114
Query: 174 NFNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFS 233
+ NG + Q ++NWA ++ G+R E +S +IFVGDL+ +VTDA L ++F S FS
Sbjct: 115 SLNGRHL--FGQPIKVNWA-YATGQR--EDTSSHFNIFVGDLSPEVTDATLYQSF-SVFS 168
Query: 234 SIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGX 293
S A+V+ D TGRS+G+GFV F ++ + A+ EMNG + S+R +R AT T G
Sbjct: 169 SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWATKGATSGD 228
Query: 294 XXXXXXXXAVV-LAGGHPSNGAVAQGSQS-DGDSNNTTIFVGGLDSDISDEDLRQPF--L 349
+VV L G +G ++ + +S TT++VG L +++ DL + F L
Sbjct: 229 DKLSSDGKSVVELTTGSSEDGKETLNEETPENNSQFTTVYVGNLAPEVTQLDLHRYFHAL 288
Query: 350 QFGDVVSVKIPVGKGCGFVQFADRKNAEEAIHALNG-TVIGKQTVRLSWGRSP 401
G + V++ KG GFV++ A AI N + + ++ SWG P
Sbjct: 289 GAGVIEEVRVQRDKGFGFVRYNTHPEAALAIQMGNTQPYLFNRQIKCSWGNKP 341
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 329 TIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVGK---GCGFVQFADRKNAEEAIHALNG 385
+++VG + + +++ L++ F G V S K+ + K GFV + DR++A AI +LNG
Sbjct: 60 SVYVGNIHTQVTEPLLQEIFTSTGPVESSKL-IRKDKSSYGFVHYFDRRSAALAILSLNG 118
Query: 386 TVIGKQTVRLSWGRSPGNK 404
+ Q ++++W + G +
Sbjct: 119 RHLFGQPIKVNWAYATGQR 137
>AT1G54080.2 | Symbols: UBP1A | UBP1A; mRNA 3'-UTR binding |
chr1:20187591-20190492 REVERSE
Length = 430
Score = 145 bits (365), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 99/299 (33%), Positives = 155/299 (51%), Gaps = 21/299 (7%)
Query: 113 IRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVL 172
R+++ G++H + E + FA TG + S K+IR ++ YGFV ++ R A +
Sbjct: 62 CRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS----YGFVHYFDRRCASMAI 117
Query: 173 QNFNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFG--- 229
NG + Q ++NWA ++ G+R E +S +IFVGDL+ +VTDA L ++F
Sbjct: 118 MTLNGRHI--FGQPMKVNWA-YATGQR--EDTSSHFNIFVGDLSPEVTDAALFDSFSAFN 172
Query: 230 SRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKK 289
S S + A+V+ D TGRS+G+GFV F ++ + A+ EMNG + S+R +R AT
Sbjct: 173 SCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWATKGA 232
Query: 290 TYGXXXXXXXXXAVV-LAGGHPSNGAVAQGSQSDGDSNN---TTIFVGGLDSDISDEDLR 345
T+G +VV L G +G + S D NN TT++VG L +++ DL
Sbjct: 233 TFGEDKHSSDGKSVVELTNGSSEDG--RELSNEDAPENNPQFTTVYVGNLSPEVTQLDLH 290
Query: 346 QPFLQFGD--VVSVKIPVGKGCGFVQFADRKNAEEAIHALNG-TVIGKQTVRLSWGRSP 401
+ F G + V++ KG GFV++ A AI N + + +R SWG P
Sbjct: 291 RLFYTLGAGVIEEVRVQRDKGFGFVRYNTHDEAALAIQMGNAQPFLFSRQIRCSWGNKP 349
>AT1G17370.1 | Symbols: UBP1B | UBP1B (OLIGOURIDYLATE BINDING
PROTEIN 1B); mRNA 3'-UTR binding | chr1:5951835-5954818
REVERSE
Length = 419
Score = 141 bits (356), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 95/294 (32%), Positives = 158/294 (53%), Gaps = 15/294 (5%)
Query: 113 IRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVL 172
R++++G++H + E + FA TG V S K+IR +++ YGFV ++ R +A +
Sbjct: 53 CRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSS----YGFVHYFDRRSAGLAI 108
Query: 173 QNFNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRF 232
+ NG + Q ++NWA +++G+R E +S +IFVGDL+ +VTDAML F S +
Sbjct: 109 LSLNGRHL--FGQPIKVNWA-YASGQR--EDTSSHFNIFVGDLSPEVTDAMLFTCF-SVY 162
Query: 233 SSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYG 292
+ A+V+ D TGRS+G+GFV F ++ + A+ E+ G + +R +R AT T G
Sbjct: 163 PTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWATKGATSG 222
Query: 293 XXXXXXXXXAVV-LAGGHPSNGA-VAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPF-- 348
+VV L G +G G + ++ TT++VG L ++S DL + F
Sbjct: 223 EDKQSSDSKSVVELTSGVSEDGKDTTNGEAPENNAQYTTVYVGNLAPEVSQVDLHRHFHS 282
Query: 349 LQFGDVVSVKIPVGKGCGFVQFADRKNAEEAIHALNG-TVIGKQTVRLSWGRSP 401
L G + V++ KG GFV+++ A AI N + + + ++ SWG P
Sbjct: 283 LGAGVIEEVRVQRDKGFGFVRYSTHVEAALAIQMGNTHSYLSGRQMKCSWGSKP 336
>AT1G17370.2 | Symbols: UBP1B | UBP1B (OLIGOURIDYLATE BINDING
PROTEIN 1B) | chr1:5951835-5954818 REVERSE
Length = 416
Score = 139 bits (350), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 157/293 (53%), Gaps = 16/293 (5%)
Query: 113 IRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVL 172
R++++G++H + E + FA TG V S K+IR +++ YGFV ++ R +A +
Sbjct: 53 CRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSS----YGFVHYFDRRSAGLAI 108
Query: 173 QNFNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRF 232
+ NG + Q ++NWA +++G+R E +S +IFVGDL+ +VTDAML F S +
Sbjct: 109 LSLNGRHL--FGQPIKVNWA-YASGQR--EDTSSHFNIFVGDLSPEVTDAMLFTCF-SVY 162
Query: 233 SSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYG 292
+ A+V+ D TGRS+G+GFV F ++ + A+ E+ G + +R +R AT T G
Sbjct: 163 PTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWATKGATSG 222
Query: 293 XXXXXXXXXAVV-LAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPF--L 349
+VV L G + G + ++ TT++VG L ++S DL + F L
Sbjct: 223 EDKQSSDSKSVVELTSGDGKD--TTNGEAPENNAQYTTVYVGNLAPEVSQVDLHRHFHSL 280
Query: 350 QFGDVVSVKIPVGKGCGFVQFADRKNAEEAIHALNG-TVIGKQTVRLSWGRSP 401
G + V++ KG GFV+++ A AI N + + + ++ SWG P
Sbjct: 281 GAGVIEEVRVQRDKGFGFVRYSTHVEAALAIQMGNTHSYLSGRQMKCSWGSKP 333
>AT2G23350.1 | Symbols: PAB4 | PAB4 (POLY(A) BINDING PROTEIN 4); RNA
binding / translation initiation factor |
chr2:9950289-9953121 FORWARD
Length = 662
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/292 (29%), Positives = 145/292 (49%), Gaps = 31/292 (10%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++ +L +D +H F+ G +VS KV + GQS GYGFV+F + +A+ ++
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATD-HMGQSRGYGFVQFDTEDSAKNAIEKL 194
Query: 176 NGTMMPNTDQAFRLNWASFSAGERRSEAA--TSDLSIFVGDLAIDVTDAMLQETFGSRFS 233
NG ++ N Q F F E R AA +++V +L+ TD L+ TFG ++
Sbjct: 195 NGKVL-NDKQIF---VGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFG-QYG 249
Query: 234 SIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGX 293
SI A V+ D + G+S+ +GFV F + + RA+ +NG ++ VG A K
Sbjct: 250 SISSAVVMRDGD-GKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKK----- 303
Query: 294 XXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDS-NNTTIFVGGLDSDISDEDLRQPFLQFG 352
+ L+ + QGS G+ + ++V LD ++DE LR+ F +FG
Sbjct: 304 -----SERELELSRRY------EQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFG 352
Query: 353 DVVSVKI---PVG--KGCGFVQFADRKNAEEAIHALNGTVIGKQTVRLSWGR 399
+ S K+ P G KG GFV F+ A ++ +NG ++G + + ++ +
Sbjct: 353 TITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQ 404
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/277 (27%), Positives = 133/277 (48%), Gaps = 42/277 (15%)
Query: 115 TIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQN 174
++++GDL + ++ +++ F +VVS +V R+ T S GYG+V + + AEK +Q
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106
Query: 175 FNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSS 234
N + + + R+ ++S + RRS ++FV +L V + L E F S +
Sbjct: 107 LNYSYL--NGKMIRITYSSRDSSARRSGVG----NLFVKNLDKSVDNKTLHEAF-SGCGT 159
Query: 235 IKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXX 294
I KV D + G+S+GYGFV+F E+ A+ ++NG +++ + VG K+
Sbjct: 160 IVSCKVATD-HMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEE---- 214
Query: 295 XXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNN-TTIFVGGLDSDISDEDLRQPFLQFGD 353
+S D T ++V L +D++L+ F Q+G
Sbjct: 215 ------------------------RESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGS 250
Query: 354 VVS-VKIPVGKG---C-GFVQFADRKNAEEAIHALNG 385
+ S V + G G C GFV F + ++A A+ ALNG
Sbjct: 251 ISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNG 287
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 92/186 (49%), Gaps = 17/186 (9%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++ +L ++ + F G + SA V+R+ G+S +GFV F + A + ++
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGD-GKSRCFGFVNFENPEDAARAVEAL 285
Query: 176 NGTMMPNTDQAFRLNWASFSAGE-----RRSEAATSD-------LSIFVGDLAIDVTDAM 223
NG D+ + + A + RR E +SD L+++V +L VTD
Sbjct: 286 NGKKF--DDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEK 343
Query: 224 LQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVG 283
L+E F + F +I KV+ D +G SKG GFV F +E +R + EMNG +P+ V
Sbjct: 344 LRELF-AEFGTITSCKVMRDP-SGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVA 401
Query: 284 VATPKK 289
+A K+
Sbjct: 402 LAQRKE 407
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 83/190 (43%), Gaps = 37/190 (19%)
Query: 209 SIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT 268
S++VGDL +VTD+ L + F + + +V D+ T S GYG+V + + ++ +AM
Sbjct: 47 SLYVGDLDFNVTDSQLYDYF-TEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQ 105
Query: 269 EMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNT 328
++N + + + +R+ TY V
Sbjct: 106 KLNYSYLNGKMIRI-------TYSSRDSSARRSGV------------------------G 134
Query: 329 TIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV-----GKGCGFVQFADRKNAEEAIHAL 383
+FV LD + ++ L + F G +VS K+ +G GFVQF +A+ AI L
Sbjct: 135 NLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKL 194
Query: 384 NGTVIGKQTV 393
NG V+ + +
Sbjct: 195 NGKVLNDKQI 204
>AT2G36660.1 | Symbols: PAB7 | PAB7 (POLY(A) BINDING PROTEIN 7); RNA
binding / translation initiation factor |
chr2:15368555-15371477 REVERSE
Length = 609
Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 139/284 (48%), Gaps = 42/284 (14%)
Query: 115 TIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQN 174
++++GDLH + E +++ FA + S ++ ++ +G+S YG+ F SR A ++
Sbjct: 25 SLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEK 84
Query: 175 FNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSS 234
N +++ + R+ W+ + RR+ ++FV +L VT+A+LQ+ F +F +
Sbjct: 85 KNNSLL--NGKMIRVMWSVRAPDARRNGVG----NVFVKNLPESVTNAVLQDMF-KKFGN 137
Query: 235 IKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXX 294
I KV + G+S+GYGFV+F E+ A+ +N +++ + VG KKT
Sbjct: 138 IVSCKVATLED-GKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFM-KKT---- 191
Query: 295 XXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDV 354
+ + T +++ LD+D+S++ LR+ F +FG +
Sbjct: 192 ------------------------DRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKI 227
Query: 355 VSVKIP-----VGKGCGFVQFADRKNAEEAIHALNGTVIGKQTV 393
VS+ I + +G FV F + ++A A +NGT G + +
Sbjct: 228 VSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCL 271
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 86/187 (45%), Gaps = 19/187 (10%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++ +L + E+ + FA G++VS + ++ + GY FV F + A + +
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKD-ENRLCRGYAFVNFDNPEDARRAAETV 261
Query: 176 NGTMM-------------PNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDA 222
NGT +Q R + E++ A S+ I+V ++ + VT+
Sbjct: 262 NGTKFGSKCLYVGRAQKKAEREQLLREQFKE-KHEEQKMIAKVSN--IYVKNVNVAVTEE 318
Query: 223 MLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRV 282
L++ F S+ +I K++ D G+SKG+GFV F E A+ +G +P+ V
Sbjct: 319 ELRKHF-SQCGTITSTKLMCDEK-GKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYV 376
Query: 283 GVATPKK 289
+A K+
Sbjct: 377 AIAQKKE 383
>AT1G71770.1 | Symbols: PAB5 | PAB5 (POLY(A)-BINDING PROTEIN); RNA
binding | chr1:26994439-26997109 REVERSE
Length = 668
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 141/290 (48%), Gaps = 25/290 (8%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++ +L +D ++ F+ G ++S KV + G+S+GYGFV+F TA+ +
Sbjct: 134 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKL 192
Query: 176 NGTMMPNTDQAFRLNWASFSAGER-RSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSS 234
NG ++ N Q F ++ R S A S +++V +L ++TD L++TFG ++
Sbjct: 193 NGMLL-NDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFG-KYGD 250
Query: 235 IKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXX 294
I A VV+ +G S+ +GFV F A+ +MNG+ + VG A K
Sbjct: 251 ISSA-VVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEE 309
Query: 295 XXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDV 354
+ S QGS +++ LD ++DE L++ F ++G+V
Sbjct: 310 LRRKFEQERI------SRFEKLQGS---------NLYLKNLDDSVNDEKLKEMFSEYGNV 354
Query: 355 VSVKIP-----VGKGCGFVQFADRKNAEEAIHALNGTVIGKQTVRLSWGR 399
S K+ + +G GFV +++ + A A+ +NG +IG++ + ++ +
Sbjct: 355 TSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQ 404
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 134/284 (47%), Gaps = 39/284 (13%)
Query: 115 TIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQN 174
++++GDL ++E+++ + F V + +V R+ T +S GY +V F + A + +++
Sbjct: 46 SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGYAYVNFANPEDASRAMES 104
Query: 175 FNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSS 234
N P D+ R+ ++ R S ++F+ +L + + L ETF S F +
Sbjct: 105 LN--YAPIRDRPIRIMLSNRDPSTRLSGKG----NVFIKNLDASIDNKALYETFSS-FGT 157
Query: 235 IKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXX 294
I KV +D GRSKGYGFV+F E A+ ++NG+ +++ + VG ++
Sbjct: 158 ILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDRAR- 215
Query: 295 XXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDV 354
S+S + T ++V L +I+D++L++ F ++GD+
Sbjct: 216 ------------------------SESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDI 251
Query: 355 VSVKIPV-----GKGCGFVQFADRKNAEEAIHALNGTVIGKQTV 393
S + + GFV F + A A+ +NG +G+ +
Sbjct: 252 SSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVL 295
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 90/185 (48%), Gaps = 15/185 (8%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++ +L + ++ + F G++ SA V+++ Q+G S +GFV F S A ++
Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKD-QSGNSRSFGFVNFVSPEAAAVAVEKM 285
Query: 176 NGTMMPNTDQAF--RLNWASFSAGERRSEAATSDLS---------IFVGDLAIDVTDAML 224
NG + D + R S E R + +S +++ +L V D L
Sbjct: 286 NGISL-GEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKL 344
Query: 225 QETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGV 284
+E F S + ++ KV+++S G S+G+GFV + + E AM EMNG +P+ V +
Sbjct: 345 KEMF-SEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVAL 402
Query: 285 ATPKK 289
A K+
Sbjct: 403 AQRKE 407
>AT1G49760.1 | Symbols: PAB8 | PAB8 (POLY(A) BINDING PROTEIN 8); RNA
binding / translation initiation factor |
chr1:18420408-18423421 FORWARD
Length = 671
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 125/276 (45%), Gaps = 40/276 (14%)
Query: 115 TIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQN 174
++++GDL + ++ + F G+VVS +V R+ T +S GYG+V + + A + L
Sbjct: 46 SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 105
Query: 175 FNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSS 234
N M +A R+ ++ R+S +IF+ +L + L ETF S F
Sbjct: 106 LN--FMALNGRAIRVMYSVRDPSLRKSGVG----NIFIKNLDKSIDHKALHETF-SAFGP 158
Query: 235 IKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXX 294
I KV +D +G+SKGYGFV++ + A+ ++NG+ +++ + VG K
Sbjct: 159 ILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHK------ 211
Query: 295 XXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDV 354
Q S T ++V L +SDE+L + F +FG
Sbjct: 212 ---------------------LQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVT 250
Query: 355 VSVKIP-----VGKGCGFVQFADRKNAEEAIHALNG 385
S I KG GFV F + +A A+ ALNG
Sbjct: 251 TSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNG 286
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/299 (24%), Positives = 140/299 (46%), Gaps = 29/299 (9%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
I++ +L +D +H F+ G ++S KV + +GQS+GYGFV++ + A+ +
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAIDKL 193
Query: 176 NGTMMPNTDQAFRLNWASFSAGERRSEAA--TSDLSIFVGDLAIDVTDAMLQETFGSRFS 233
NG ++ N Q + F +R + +++V +L+ ++D L + FG
Sbjct: 194 NGMLL-NDKQVY---VGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGE--F 247
Query: 234 SIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGX 293
+ + V++ G+SKG+GFV F + ++ RA+ +NG ++ VG A K
Sbjct: 248 GVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERET 307
Query: 294 XXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGD 353
++ ++ S + ++V LD ++D+ LR+ F FG
Sbjct: 308 ELKQKFEQSL---------------KEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGT 352
Query: 354 VVSVKI---P--VGKGCGFVQFADRKNAEEAIHALNGTVIGKQTVRLSWGRSPGNKHWR 407
+ S K+ P V +G GFV F+ + A AI +NG +I + + ++ + ++ R
Sbjct: 353 ITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQRKEDRKAR 411
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 86/190 (45%), Gaps = 37/190 (19%)
Query: 209 SIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT 268
S++VGDL VTD+ L E F ++ + +V D T RS GYG+V + + +RA+
Sbjct: 46 SLYVGDLDATVTDSQLFEAF-TQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALN 104
Query: 269 EMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNT 328
E+N + + R +R V+ + PS G+
Sbjct: 105 ELNFMALNGRAIR---------------------VMYSVRDPSLRKSGVGN--------- 134
Query: 329 TIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV-----GKGCGFVQFADRKNAEEAIHAL 383
IF+ LD I + L + F FG ++S K+ V KG GFVQ+ + A+ AI L
Sbjct: 135 -IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKL 193
Query: 384 NGTVIGKQTV 393
NG ++ + V
Sbjct: 194 NGMLLNDKQV 203
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 7/81 (8%)
Query: 328 TTIFVGGLDSDISDEDLRQPFLQFGDVVSVKI------PVGKGCGFVQFADRKNAEEAIH 381
T+++VG LD+ ++D L + F Q G VVSV++ G G+V +A ++A A++
Sbjct: 45 TSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALN 104
Query: 382 ALNGTVIGKQTVRLSWG-RSP 401
LN + + +R+ + R P
Sbjct: 105 ELNFMALNGRAIRVMYSVRDP 125
>AT1G22760.1 | Symbols: PAB3 | PAB3 (POLY(A) BINDING PROTEIN 3); RNA
binding | chr1:8055588-8058788 FORWARD
Length = 660
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/290 (26%), Positives = 140/290 (48%), Gaps = 25/290 (8%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
I++ +L +D + F+ G ++S KV + TG+S+GYGFV+F +A+ +
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKL 196
Query: 176 NGTMMPNTDQAFRLNWASFSAGERRSEAATSDLS-IFVGDLAIDVTDAMLQETFGSRFSS 234
NG +M N Q F ++ R T + ++V +L ++ + L++TFG +F
Sbjct: 197 NGMLM-NDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFG-KFGV 254
Query: 235 IKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXX 294
I A VV+ +G S+ +GFV F A+ +MNG+ + + VG A KK+
Sbjct: 255 ISSA-VVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQ-KKSEREE 312
Query: 295 XXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDV 354
+ S GA +++ LD + DE L++ F ++G+V
Sbjct: 313 ELRRKFEQERINRFEKSQGA--------------NLYLKNLDDSVDDEKLKEMFSEYGNV 358
Query: 355 VSVKI---PVG--KGCGFVQFADRKNAEEAIHALNGTVIGKQTVRLSWGR 399
S K+ P G +G GFV +++ + A A+ +NG +IG++ + ++ +
Sbjct: 359 TSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQ 408
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 129/280 (46%), Gaps = 39/280 (13%)
Query: 115 TIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQN 174
+++ GDL + E ++ + F H VVS +V R+ Q +S GY ++ F + A + ++
Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRAMEA 108
Query: 175 FNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSS 234
N T P D+ R+ ++ R S +IF+ +L + + L ETF S F +
Sbjct: 109 LNYT--PLFDRPIRIMLSNRDPSTRLSGKG----NIFIKNLDASIDNKALFETFSS-FGT 161
Query: 235 IKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXX 294
I KV +D TGRSKGYGFV+F E A+ ++NG+ +++ + VG ++
Sbjct: 162 ILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERAR- 219
Query: 295 XXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDV 354
++ T ++V L +I +++LR+ F +FG +
Sbjct: 220 ------------------------DENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVI 255
Query: 355 VSVKIPVGKG----C-GFVQFADRKNAEEAIHALNGTVIG 389
S + + C GFV F + A A+ +NG +G
Sbjct: 256 SSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLG 295
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 89/190 (46%), Gaps = 38/190 (20%)
Query: 209 SIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT 268
S++ GDL VT+A L + F +++ +V D N RS GY ++ F + N+ RAM
Sbjct: 50 SLYAGDLDPKVTEAHLFDLF-KHVANVVSVRVCRDQNR-RSLGYAYINFSNPNDAYRAME 107
Query: 269 EMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNT 328
+N +RP+R+ +L+ PS +G+
Sbjct: 108 ALNYTPLFDRPIRI---------------------MLSNRDPSTRLSGKGN--------- 137
Query: 329 TIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV-----GKGCGFVQFADRKNAEEAIHAL 383
IF+ LD+ I ++ L + F FG ++S K+ + KG GFVQF ++A+ AI L
Sbjct: 138 -IFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKL 196
Query: 384 NGTVIGKQTV 393
NG ++ + V
Sbjct: 197 NGMLMNDKQV 206
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 89/187 (47%), Gaps = 19/187 (10%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++ +L + E+ + F G + SA V+R+ Q+G S +GFV F A ++
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRD-QSGNSRCFGFVNFECTEAAASAVEKM 289
Query: 176 NGTMMPNTDQAFRLNWASFSAGERRSEA-------------ATSDLSIFVGDLAIDVTDA 222
NG + D + A ER E + ++++ +L V D
Sbjct: 290 NGISL--GDDVLYVGRAQ-KKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDE 346
Query: 223 MLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRV 282
L+E F S + ++ +KV+++ G S+G+GFV + + E RA++EMNG +P+ +
Sbjct: 347 KLKEMF-SEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYI 404
Query: 283 GVATPKK 289
+A K+
Sbjct: 405 ALAQRKE 411
>AT1G34140.1 | Symbols: PAB1 | PAB1 (POLY(A) BINDING PROTEIN 1); RNA
binding / translation initiation factor |
chr1:12433334-12434713 REVERSE
Length = 407
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 135/292 (46%), Gaps = 31/292 (10%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++ +L +D + + F+ G+V+S KV R+ +G S+GYGFV+FYS +
Sbjct: 33 VFVKNLDESIDNKQLCDMFSAFGKVLSCKVARD-ASGVSKGYGFVQFYSDLSVYTACNFH 91
Query: 176 NGTMMPNTDQAFRLNWASF-SAGE-RRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFS 233
NGT++ N ++ F S G+ +S T +++V +L TDA L+ FG F
Sbjct: 92 NGTLIRNQ----HIHVCPFVSRGQWDKSRVFT---NVYVKNLVETATDADLKRLFGE-FG 143
Query: 234 SIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGX 293
I A VV+ G+S+ +GFV F A+ +MNGV + + VG A K
Sbjct: 144 EITSA-VVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNRTE 202
Query: 294 XXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGD 353
++ G ++V LD + + L + F +FG
Sbjct: 203 DLKAKFELEKIIRDMKTRKG--------------MNLYVKNLDDSVDNTKLEELFSEFGT 248
Query: 354 VVSVKIPV-----GKGCGFVQFADRKNAEEAIHALNGTVIGKQTVRLSWGRS 400
+ S K+ V KG GFV+F+ + A +A+ +NG ++G + + +S +
Sbjct: 249 ITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLAQC 300
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 89/187 (47%), Gaps = 14/187 (7%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++ +L + + F GE+ SA V+++ + G+S +GFV F A ++
Sbjct: 121 VYVKNLVETATDADLKRLFGEFGEITSAVVMKDGE-GKSRRFGFVNFEKAEAAVTAIEKM 179
Query: 176 NGTMMPNTDQAF-----RLNWASFSAGERRSEAATSDL------SIFVGDLAIDVTDAML 224
NG ++ + + N + E D+ +++V +L V + L
Sbjct: 180 NGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKL 239
Query: 225 QETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGV 284
+E F S F +I KV++ SN G SKG GFV F E ++AM +MNG N+P+ V +
Sbjct: 240 EELF-SEFGTITSCKVMVHSN-GISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSL 297
Query: 285 ATPKKTY 291
A K+ +
Sbjct: 298 AQCKEQH 304
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 308 GHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIP-----VG 362
G P ++ S+ S +FV LD I ++ L F FG V+S K+ V
Sbjct: 11 GKPMRIMFSERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVS 70
Query: 363 KGCGFVQFADRKNAEEAIHALNGTVIGKQTVRLS 396
KG GFVQF + A + NGT+I Q + +
Sbjct: 71 KGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHVC 104
>AT3G16380.1 | Symbols: PAB6 | PAB6 (POLY(A) BINDING PROTEIN 6); RNA
binding / translation initiation factor |
chr3:5558682-5560999 REVERSE
Length = 537
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 130/284 (45%), Gaps = 38/284 (13%)
Query: 115 TIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQN 174
++++GDL + E + + F+ VVS + RN TG+S Y ++ F S +A +
Sbjct: 22 SLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTR 81
Query: 175 FNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSS 234
N + + +A R+ W+ RR T +++V +L +T + L+ F F S
Sbjct: 82 LNHSDL--KGKAMRIMWSQRDLAYRR-RTRTGFANLYVKNLDSSITSSCLERMFCP-FGS 137
Query: 235 IKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXX 294
I KVV ++ G+SKG+GFV+F E A + ++G + + V K
Sbjct: 138 ILSCKVVEEN--GQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKD----- 190
Query: 295 XXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDV 354
A+A G+ ++T ++V L ++D+ L F Q+G V
Sbjct: 191 ----------------ERAAMA------GNQDSTNVYVKNLIETVTDDCLHTLFSQYGTV 228
Query: 355 VSVKIP-----VGKGCGFVQFADRKNAEEAIHALNGTVIGKQTV 393
SV + +G GFV F + +NA++A+ +L G +G + +
Sbjct: 229 SSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKL 272
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 89/187 (47%), Gaps = 20/187 (10%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++ +L + ++ +H F+ G V S V+R+ G+S G+GFV F + A+K +++
Sbjct: 204 VYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDG-MGRSRGFGFVNFCNPENAKKAMESL 262
Query: 176 NGTMMPNTDQAFRLNWASFSAGERRSEAATSDLS-------------IFVGDLAIDVTDA 222
G + + +L + R E S ++V +L+ + +
Sbjct: 263 CGLQLGSK----KLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNET 318
Query: 223 MLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRV 282
L+E FG + I AKV+ N GRSKG+GFV F + E +A +NG +P+ V
Sbjct: 319 RLREIFGC-YGQIVSAKVMCHEN-GRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVV 376
Query: 283 GVATPKK 289
VA K+
Sbjct: 377 RVAERKE 383
>AT4G24770.1 | Symbols: ATRBP31, CP31, ATRBP33, RBP31 | RBP31
(31-KDA RNA BINDING PROTEIN); RNA binding / poly(U)
binding | chr4:12766233-12767962 REVERSE
Length = 329
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 92/184 (50%), Gaps = 14/184 (7%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++G+L + ++ + F G V A+VI N++T QS G+GFV S AE ++ F
Sbjct: 152 LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKF 211
Query: 176 N-----GTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGS 230
N G ++ A R S ER ++VG+L DV + L++ F S
Sbjct: 212 NRYDLNGRLLTVNKAAPR-----GSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLF-S 265
Query: 231 RFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVA---TP 287
+ A+VV D TGRS+G+GFV D +E A++ ++G R +RV VA P
Sbjct: 266 EHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPP 325
Query: 288 KKTY 291
++ Y
Sbjct: 326 RRGY 329
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 84/200 (42%), Gaps = 38/200 (19%)
Query: 205 TSDLSIFVGDLAIDVTD---AMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDEN 261
+ + +FVG+LA DV AML E G +++ A+V+ + T +S+G+GFV +
Sbjct: 147 SEEAKLFVGNLAYDVNSQALAMLFEQAG----TVEIAEVIYNRETDQSRGFGFVTMSSVD 202
Query: 262 ERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQS 321
E A+ + N + R + V A P+ G P
Sbjct: 203 EAETAVEKFNRYDLNGRLLTVNKAAPR------------------GSRPERAPRVY---- 240
Query: 322 DGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV------GKGCGFVQFADRKN 375
++VG L D+ + L Q F + G VV ++ +G GFV +D
Sbjct: 241 ---EPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDE 297
Query: 376 AEEAIHALNGTVIGKQTVRL 395
EAI AL+G + + +R+
Sbjct: 298 LNEAISALDGQNLEGRAIRV 317
>AT5G50250.1 | Symbols: | 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative | chr5:20469903-20471191 REVERSE
Length = 289
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 90/172 (52%), Gaps = 5/172 (2%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++G+L + +D + F G V ++VI N+ T QS G+GFV + AEK ++ F
Sbjct: 115 LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKF 174
Query: 176 NGTMMPNTDQAFRLNWASF--SAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFS 233
N + + +N A+ S ER+ + I+VG+L DV L+ F S
Sbjct: 175 NSFEV--NGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLF-SEHG 231
Query: 234 SIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVA 285
+ A+VV D TGRS+G+GFV+ +ENE A+ ++G R ++V VA
Sbjct: 232 KVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVA 283
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 83/195 (42%), Gaps = 38/195 (19%)
Query: 210 IFVGDLAIDVTD---AMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRA 266
+FVG+L DV AML E G+ ++ ++V+ + +T +S+G+GFV E +A
Sbjct: 115 LFVGNLPYDVDSQALAMLFEQAGT----VEISEVIYNRDTDQSRGFGFVTMSTVEEAEKA 170
Query: 267 MTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSN 326
+ + N + R + V A P+ G P Q D
Sbjct: 171 VEKFNSFEVNGRRLTVNRAAPR------------------GSRPER----QPRVYDAAFR 208
Query: 327 NTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV------GKGCGFVQFADRKNAEEAI 380
I+VG L D+ L + F + G VV ++ +G GFVQ ++ AI
Sbjct: 209 ---IYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAI 265
Query: 381 HALNGTVIGKQTVRL 395
AL+G + + +++
Sbjct: 266 AALDGQNLEGRAIKV 280
>AT3G52380.1 | Symbols: PDE322, CP33 | CP33 (PIGMENT DEFECTIVE 322);
RNA binding | chr3:19432597-19433833 FORWARD
Length = 329
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 97/191 (50%), Gaps = 15/191 (7%)
Query: 110 GDEIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAE 169
G+E R +++G+L + + + + F G VV +++ +K T +S G+GFV S A+
Sbjct: 113 GEEGR-LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAK 171
Query: 170 KVLQNFNGTMMPNTDQAFRLNWASFSAGERRSEAAT-----------SDLSIFVGDLAID 218
+ +Q FN + + + ++N+ G T S ++ G+L +
Sbjct: 172 EAMQMFNSSQI--GGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWN 229
Query: 219 VTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNR 278
+T L++ FG + + GAKV+ + NTGRS+G+GF+ F A+ MNGV R
Sbjct: 230 LTSQGLKDAFGDQ-PGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGR 288
Query: 279 PMRVGVATPKK 289
+R+ +A+ ++
Sbjct: 289 ALRLNLASERE 299
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 87/204 (42%), Gaps = 23/204 (11%)
Query: 201 SEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDE 260
++A+ + ++VG+L +T + L + FG ++ ++V D T RS+G+GFV G
Sbjct: 109 TQASGEEGRLYVGNLPYTITSSELSQIFGEA-GTVVDVQIVYDKVTDRSRGFGFVTMGSI 167
Query: 261 NERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQ 320
E AM N R ++V P+ G + ++
Sbjct: 168 EEAKEAMQMFNSSQIGGRTVKVNF--PEVPRGGENEVMRTK-------------IRDNNR 212
Query: 321 SDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV------GKGCGFVQFADRK 374
S DS + ++ G L +++ + L+ F V+ K+ +G GF+ F +
Sbjct: 213 SYVDSPHK-VYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAE 271
Query: 375 NAEEAIHALNGTVIGKQTVRLSWG 398
N + A+ +NG + + +RL+
Sbjct: 272 NVQSALATMNGVEVEGRALRLNLA 295
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Query: 317 QGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVGK------GCGFVQF 370
Q +Q+ G+ ++VG L I+ +L Q F + G VV V+I K G GFV
Sbjct: 107 QTTQASGEEGR--LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTM 164
Query: 371 ADRKNAEEAIHALNGTVIGKQTVRLSWGRSP 401
+ A+EA+ N + IG +TV++++ P
Sbjct: 165 GSIEEAKEAMQMFNSSQIGGRTVKVNFPEVP 195
>AT2G18510.1 | Symbols: EMB2444 | EMB2444 (EMBRYO DEFECTIVE 2444);
RNA binding | chr2:8038636-8040599 REVERSE
Length = 363
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 90/178 (50%), Gaps = 7/178 (3%)
Query: 115 TIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQN 174
T+++G L + E + F G VV+ V +++ T + YGF+E+ S A+ ++
Sbjct: 26 TVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKV 85
Query: 175 FNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSS 234
N M+ + R+N AS +++S ++L F+G+L DV + +L +TF +
Sbjct: 86 LN--MIKLHGKPIRVNKAS---QDKKSLDVGANL--FIGNLDPDVDEKLLYDTFSAFGVI 138
Query: 235 IKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYG 292
K++ D +TG S+G+GF+ + A+ M G + SNR + V A K T G
Sbjct: 139 ASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYKKDTKG 196
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 6/93 (6%)
Query: 310 PSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIP------VGK 363
P GA G S + + T++VGGLD+ +S+E L + F+Q G VV+V +P + +
Sbjct: 7 PGVGANLLGQHSAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQ 66
Query: 364 GCGFVQFADRKNAEEAIHALNGTVIGKQTVRLS 396
GF+++ ++A+ AI LN + + +R++
Sbjct: 67 NYGFIEYRSEEDADYAIKVLNMIKLHGKPIRVN 99
>AT1G60000.1 | Symbols: | 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative |
chr1:22097343-22098205 REVERSE
Length = 258
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 84/174 (48%), Gaps = 3/174 (1%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
++ G+L + +D + +V+ N+ TGQS G+ FV + ++ N
Sbjct: 87 LYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNL 146
Query: 176 NGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSI 235
+GT +A ++N+A + ++ +FVG+L+ VT L F +
Sbjct: 147 DGTEY--LGRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAF-RECGDV 203
Query: 236 KGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKK 289
GA+VV D +TGRS+GYGFV + + E A+ ++G R +RV +A KK
Sbjct: 204 VGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQGKK 257
>AT4G34110.1 | Symbols: PABP2, PAB2 | PAB2 (POLY(A) BINDING PROTEIN
2); RNA binding | chr4:16337714-16339896 FORWARD
Length = 443
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 96/184 (52%), Gaps = 13/184 (7%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++ +L ++ + N F G++ SA V+++ + G+S+G+GFV F + A + +++
Sbjct: 31 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESL 89
Query: 176 NGTMMPNTD-QAFRLNWASFSAGERR-------SEAATSDLS--IFVGDLAIDVTDAMLQ 225
NG + + R S E R EAA S ++V +L ++D L+
Sbjct: 90 NGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLK 149
Query: 226 ETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVA 285
E F S F ++ +KV+ D N G SKG GFV F E T AM++++G ++P+ V +A
Sbjct: 150 EIF-SPFGTVTSSKVMRDPN-GTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIA 207
Query: 286 TPKK 289
K+
Sbjct: 208 QRKE 211
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 100/217 (46%), Gaps = 25/217 (11%)
Query: 198 ERRSEAATSDLS-IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVR 256
ER S A + + ++V +LA TD L+ FG + I A VV+ G+SKG+GFV
Sbjct: 18 ERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGE-YGKITSA-VVMKDGEGKSKGFGFVN 75
Query: 257 FGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVA 316
F + ++ RA+ +NG ++ VG A K
Sbjct: 76 FENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVR----------------YE 119
Query: 317 QGSQSDGDS-NNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKI---PVG--KGCGFVQF 370
Q + D ++ ++V LD ISDE L++ F FG V S K+ P G KG GFV F
Sbjct: 120 QNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAF 179
Query: 371 ADRKNAEEAIHALNGTVIGKQTVRLSWGRSPGNKHWR 407
A + A EA+ L+G +I + + ++ + ++ R
Sbjct: 180 ATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVR 216
>AT2G37220.1 | Symbols: | 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative |
chr2:15642059-15643410 REVERSE
Length = 289
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 92/200 (46%), Gaps = 27/200 (13%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++G+L +D + F G V +VI +K TG+S G+GFV S + E Q F
Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152
Query: 176 NGTMMPNTDQAFRLNWAS--------FSAGERRSEAATSDLS-------------IFVGD 214
NG + + R+N FS G R S ++ ++VG+
Sbjct: 153 NGYEL--DGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGN 210
Query: 215 LAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVF 274
L+ V D L+ F + ++ A+V+ D ++GRSKG+GFV + E A+ ++G
Sbjct: 211 LSWGVDDMALESLFSEQGKVVE-ARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGAD 269
Query: 275 CSNRPMRVGVA---TPKKTY 291
R +RV A P++ Y
Sbjct: 270 LDGRQIRVSEAEARPPRRQY 289
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 95/205 (46%), Gaps = 17/205 (8%)
Query: 200 RSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGD 259
+ ++ ++DL +FVG+L +V A L + F S +++ +V+ D TGRS+G+GFV
Sbjct: 83 KEQSFSADLKLFVGNLPFNVDSAQLAQLFESA-GNVEMVEVIYDKITGRSRGFGFVTMSS 141
Query: 260 ENERTRAMTEMNGVFCSNRPMRV--GVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQ 317
+E A + NG RP+RV G PK+ G S+G+
Sbjct: 142 VSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFG--------SSGSGYG 193
Query: 318 GSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV------GKGCGFVQFA 371
G G + ++VG L + D L F + G VV ++ KG GFV +
Sbjct: 194 GGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYD 253
Query: 372 DRKNAEEAIHALNGTVIGKQTVRLS 396
+ + AI +L+G + + +R+S
Sbjct: 254 SSQEVQNAIKSLDGADLDGRQIRVS 278
>AT3G13224.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:4254855-4256628 FORWARD
Length = 358
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 89/175 (50%), Gaps = 5/175 (2%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
I++G LH + F GE+ + ++R++ TGQ G+GF+ F + +KV+++
Sbjct: 21 IFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED- 79
Query: 176 NGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSI 235
T + N Q AG +S+ + IFVG + VT+ L++ F +++ ++
Sbjct: 80 --THVINGKQVEIKRTIPKGAGGNQSKDIKTK-KIFVGGIPSTVTEDELKDFF-AKYGNV 135
Query: 236 KGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKT 290
+V+ D T RS+G+GFV F E +++ N + ++ + + A PKK+
Sbjct: 136 VEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQVEIKKAEPKKS 190
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 41/72 (56%)
Query: 112 EIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKV 171
+ + I++G + + E+ + + FA G VV +VIR+ +T +S G+GFV F S +++
Sbjct: 107 KTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDEL 166
Query: 172 LQNFNGTMMPNT 183
L N M +T
Sbjct: 167 LSKGNMIDMADT 178
>AT3G04500.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:1212071-1213801 REVERSE
Length = 245
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 201 SEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDE 260
SE +D +F GDL +V D +L + F +RF + AKV+ D TG++KGYGFV F +
Sbjct: 130 SEWPENDYRLFCGDLGNEVNDDVLSKAF-ARFPTFNMAKVIRDKRTGKTKGYGFVSFLNP 188
Query: 261 NERTRAMTEMNGVFCSNRPMRV 282
+ A+ EMNG + NRP+++
Sbjct: 189 ADLAAALKEMNGKYVGNRPIKL 210
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
++ GDL + ++++ + FA AKVIR+K+TG+++GYGFV F + A L+
Sbjct: 139 LFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALKEM 198
Query: 176 NGTMMPNTDQAFR 188
NG + N R
Sbjct: 199 NGKYVGNRPIKLR 211
>AT4G26650.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:13445271-13447598 FORWARD
Length = 452
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 94/201 (46%), Gaps = 23/201 (11%)
Query: 198 ERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRF 257
E++ E+A+ +F+G ++ D + LQE FG ++ + A ++ D TGR++G+GF+ F
Sbjct: 2 EQKMESASDLGKLFIGGISWDTDEERLQEYFG-KYGDLVEAVIMRDRTTGRARGFGFIVF 60
Query: 258 GDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQ 317
D + R + M+ R + A P+ ++ PS+G
Sbjct: 61 ADPSVAERVI--MDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLI----SPSHGGNGG 114
Query: 318 GSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVG------KGCGFVQFA 371
G+++ IFVGGL S I++ + + F QFG + V + +G GF+ F
Sbjct: 115 GART------KKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFD 168
Query: 372 DRKNAE----EAIHALNGTVI 388
++ + + H LNG ++
Sbjct: 169 SEESVDMVLHKTFHELNGKMV 189
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 93/201 (46%), Gaps = 25/201 (12%)
Query: 112 EIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKV 171
++ +++G + DE + F G++V A ++R++ TG++ G+GF+ F + AE+V
Sbjct: 10 DLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERV 69
Query: 172 LQN---FNG------TMMPNTDQ------AFRLNWASFSAGERRSEAATSDLSIFVGDLA 216
+ + +G +P DQ A ++ S S G A T IFVG L
Sbjct: 70 IMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTK--KIFVGGLP 127
Query: 217 IDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENE----RTRAMTEMNG 272
+T+A + F +F +I V+ D NT R +G+GF+ F E + E+NG
Sbjct: 128 SSITEAEFKNYF-DQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNG 186
Query: 273 VFCSNR---PMRVGVATPKKT 290
+ P + TP ++
Sbjct: 187 KMVEVKRAVPKELSSTTPNRS 207
>AT4G26650.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:13445558-13447598 FORWARD
Length = 455
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 94/201 (46%), Gaps = 23/201 (11%)
Query: 198 ERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRF 257
E++ E+A+ +F+G ++ D + LQE FG ++ + A ++ D TGR++G+GF+ F
Sbjct: 5 EQKMESASDLGKLFIGGISWDTDEERLQEYFG-KYGDLVEAVIMRDRTTGRARGFGFIVF 63
Query: 258 GDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQ 317
D + R + M+ R + A P+ ++ PS+G
Sbjct: 64 ADPSVAERVI--MDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLI----SPSHGGNGG 117
Query: 318 GSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVG------KGCGFVQFA 371
G+++ IFVGGL S I++ + + F QFG + V + +G GF+ F
Sbjct: 118 GART------KKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFD 171
Query: 372 DRKNAE----EAIHALNGTVI 388
++ + + H LNG ++
Sbjct: 172 SEESVDMVLHKTFHELNGKMV 192
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 92/201 (45%), Gaps = 25/201 (12%)
Query: 112 EIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKV 171
++ +++G + DE + F G++V A ++R++ TG++ G+GF+ F + AE+V
Sbjct: 13 DLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERV 72
Query: 172 LQNFN---------GTMMPNTDQ------AFRLNWASFSAGERRSEAATSDLSIFVGDLA 216
+ + + +P DQ A ++ S S G A T IFVG L
Sbjct: 73 IMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTK--KIFVGGLP 130
Query: 217 IDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENE----RTRAMTEMNG 272
+T+A + F +F +I V+ D NT R +G+GF+ F E + E+NG
Sbjct: 131 SSITEAEFKNYF-DQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNG 189
Query: 273 VFCSNR---PMRVGVATPKKT 290
+ P + TP ++
Sbjct: 190 KMVEVKRAVPKELSSTTPNRS 210
>AT5G40490.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:16242711-16244651 FORWARD
Length = 423
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 86/174 (49%), Gaps = 7/174 (4%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
I++G L F GE+ + ++++++TGQ G+GFV + + +KV+Q+
Sbjct: 44 IFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQDN 103
Query: 176 NGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSI 235
+ + + + S S+ + +++ IFVG + V D +E F +F +
Sbjct: 104 HIIIGKQVEIKRTIPRGSMSSNDFKTKK------IFVGGIPSSVDDDEFKEFF-MQFGEL 156
Query: 236 KGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKK 289
K +++ D +TGRS+G+GFV + E+ + + N + S + + A PKK
Sbjct: 157 KEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPKK 210
>AT1G07360.1 | Symbols: | zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein |
chr1:2260560-2262793 REVERSE
Length = 481
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 320 QSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVGKGCGFVQFADRKNAEEA 379
+S D + T++VGGL+S I ++D+R F G++ S++I K C FV + R+ AE+A
Sbjct: 220 ESPDDESIKTLYVGGLNSRILEQDIRDQFYAHGEIESIRILADKACAFVTYTSREGAEKA 279
Query: 380 IHAL-NGTVIGKQTVRLSWGR 399
L N VI Q ++L+WGR
Sbjct: 280 AQELSNRLVINGQRLKLTWGR 300
>AT2G33410.1 | Symbols: | heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative | chr2:14163161-14164511
FORWARD
Length = 404
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 74/156 (47%), Gaps = 11/156 (7%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++G + DEN + F++ GEV+ V+R K TG+ G+GFV F A ++VLQ+
Sbjct: 8 LFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQDK 67
Query: 176 N---------GTMMPNTDQAFRLNWASFSAGER-RSEAATSDLSIFVGDLAIDVTDAMLQ 225
+ M +Q+ +F+A S A IFVG L +T +
Sbjct: 68 HHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTSDEFR 127
Query: 226 ETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDEN 261
F + + A ++ID T R +G+GFV F E+
Sbjct: 128 AYF-ETYGPVSDAVIMIDQTTQRPRGFGFVSFDSED 162
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 78/189 (41%), Gaps = 22/189 (11%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
+F+G ++ D + +L+E F S F + V+ + TGR +G+GFV F D R + +
Sbjct: 8 LFIGGISWDTDENLLREYF-SNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQD 66
Query: 270 MNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTT 329
+ + NR + V A ++ A ++ S +
Sbjct: 67 KHHI--DNRDVDVKRAMSREEQSPAGRSGTFNA-------------SRNFDSGANVRTKK 111
Query: 330 IFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV------GKGCGFVQFADRKNAEEAIHAL 383
IFVGGL ++ ++ R F +G V I + +G GFV F + + +H
Sbjct: 112 IFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKT 171
Query: 384 NGTVIGKQT 392
+ GKQ
Sbjct: 172 FHDLNGKQV 180
>AT2G29580.1 | Symbols: | zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein |
chr2:12659088-12661235 FORWARD
Length = 483
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 320 QSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVGKGCGFVQFADRKNAEEA 379
+S D + T++VGGL+S + ++D+R F G++ S++I K C FV + R+ AE+A
Sbjct: 220 ESPEDQSIRTLYVGGLNSRVLEQDIRDQFYAHGEIESIRILAEKACAFVTYTTREGAEKA 279
Query: 380 IHAL-NGTVIGKQTVRLSWGR 399
L N V+ Q ++L+WGR
Sbjct: 280 AEELSNRLVVNGQRLKLTWGR 300
>AT1G17640.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:6067387-6069091 REVERSE
Length = 369
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 80/161 (49%), Gaps = 8/161 (4%)
Query: 132 NCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQAFRLNW 191
N F GEVV + ++ ++ TG G+GFV F A AEKVL+ + D+ L
Sbjct: 84 NYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEEDHVI----DDRKVDLK- 138
Query: 192 ASFSAGERRSE--AATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRS 249
+ G++ ++ A + IFVG L + + L+ F + I +++ D +TGRS
Sbjct: 139 RTLPRGDKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYF-CVYGDIIEHQIMYDHHTGRS 197
Query: 250 KGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKT 290
+G+GFV F E+ R ++ ++ + + A PK+T
Sbjct: 198 RGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPKRT 238
>AT5G47620.2 | Symbols: | heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative | chr5:19319774-19321504
REVERSE
Length = 431
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 90/183 (49%), Gaps = 16/183 (8%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVL--- 172
+++G + E+ + + F GEV+ A +++++ TG++ G+GFV F AE+V+
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLK 67
Query: 173 QNFNGTMMPNTDQAFRLNWASFSAGE---RRSEAATSDLSIFVGDLAIDVTDAMLQETFG 229
+G ++ R + F+ + S ++ IFVG LA VT+A ++ F
Sbjct: 68 HIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYF- 126
Query: 230 SRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT----EMNGVFCSNRPMRVGVA 285
++F I V+ D T R +G+GF+ + E + + E+NG + + V +A
Sbjct: 127 AQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNG-----KMVEVKLA 181
Query: 286 TPK 288
PK
Sbjct: 182 VPK 184
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 92/189 (48%), Gaps = 30/189 (15%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
+F+G ++ + ++ L++ F S F + A ++ D TGR++G+GFV F D N R +
Sbjct: 8 LFIGGISWETSEDRLRDYFHS-FGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 270 MNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTT 329
+ + + A P+ + VV + SN ++ QGS G SN+
Sbjct: 67 KH--IIDGKIVEAKKAVPRDDH-----------VVF---NKSNSSL-QGSP--GPSNSKK 107
Query: 330 IFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV------GKGCGFVQF----ADRKNAEEA 379
IFVGGL S +++ + ++ F QFG + V + +G GF+ + A K ++
Sbjct: 108 IFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKT 167
Query: 380 IHALNGTVI 388
H LNG ++
Sbjct: 168 FHELNGKMV 176
>AT5G47620.1 | Symbols: | heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative | chr5:19319774-19321504
REVERSE
Length = 431
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 90/183 (49%), Gaps = 16/183 (8%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVL--- 172
+++G + E+ + + F GEV+ A +++++ TG++ G+GFV F AE+V+
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLLK 67
Query: 173 QNFNGTMMPNTDQAFRLNWASFSAGE---RRSEAATSDLSIFVGDLAIDVTDAMLQETFG 229
+G ++ R + F+ + S ++ IFVG LA VT+A ++ F
Sbjct: 68 HIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYF- 126
Query: 230 SRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT----EMNGVFCSNRPMRVGVA 285
++F I V+ D T R +G+GF+ + E + + E+NG + + V +A
Sbjct: 127 AQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNG-----KMVEVKLA 181
Query: 286 TPK 288
PK
Sbjct: 182 VPK 184
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 92/189 (48%), Gaps = 30/189 (15%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
+F+G ++ + ++ L++ F S F + A ++ D TGR++G+GFV F D N R +
Sbjct: 8 LFIGGISWETSEDRLRDYFHS-FGEVLEAVIMKDRATGRARGFGFVVFADPNVAERVVLL 66
Query: 270 MNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTT 329
+ + + A P+ + VV + SN ++ QGS G SN+
Sbjct: 67 KH--IIDGKIVEAKKAVPRDDH-----------VVF---NKSNSSL-QGSP--GPSNSKK 107
Query: 330 IFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV------GKGCGFVQF----ADRKNAEEA 379
IFVGGL S +++ + ++ F QFG + V + +G GF+ + A K ++
Sbjct: 108 IFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKT 167
Query: 380 IHALNGTVI 388
H LNG ++
Sbjct: 168 FHELNGKMV 176
>AT4G16280.3 | Symbols: FCA | FCA; RNA binding |
chr4:9208580-9214428 REVERSE
Length = 533
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 87/178 (48%), Gaps = 10/178 (5%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++G + E + F G V+ +I++K+TGQ +G FV++ + A++ ++
Sbjct: 122 LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRAL 181
Query: 176 -NGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSS 234
N +P ++ +A GE R T + +FVG L T+ ++E F +F
Sbjct: 182 HNQITLPGGTGPVQVRYAD---GE-RERIGTLEFKLFVGSLNKQATEKEVEEIF-LQFGH 236
Query: 235 IKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFC---SNRPMRVGVATPKK 289
++ ++ D +S+G GFV++ + A+ +NG + N+P+ V A PK+
Sbjct: 237 VEDVYLMRDEYR-QSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKR 293
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 81/188 (43%), Gaps = 36/188 (19%)
Query: 205 TSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERT 264
+S + +FVG + T+ ++ F + ++ ++ D TG+ +G FV++ +
Sbjct: 117 SSTVKLFVGSVPRTATEEEIRPYF-EQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDAD 175
Query: 265 RAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGH-PSNGAVAQGSQSDG 323
RA+ ++ + L GG P A G +
Sbjct: 176 RAIRALHN-----------------------------QITLPGGTGPVQVRYADGERERI 206
Query: 324 DSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKI-----PVGKGCGFVQFADRKNAEE 378
+ +FVG L+ +++++ + FLQFG V V + +GCGFV+++ ++ A
Sbjct: 207 GTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMA 266
Query: 379 AIHALNGT 386
AI LNGT
Sbjct: 267 AIDGLNGT 274
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 325 SNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVGK------GCGFVQFADRKNAEE 378
S+ +FVG + ++E++R F Q G+V+ V + K GC FV++A K+A+
Sbjct: 117 SSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADR 176
Query: 379 AIHALNGTV 387
AI AL+ +
Sbjct: 177 AIRALHNQI 185
>AT4G00830.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:352782-354965 FORWARD
Length = 495
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/273 (20%), Positives = 118/273 (43%), Gaps = 50/273 (18%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++G L + E + + GE+ ++++++ +G S+GY FV F ++ A+K ++
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE- 176
Query: 176 NGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSI 235
L+ F R + + +F+G++ + T+ ++ +
Sbjct: 177 -------------LHSKEFKGKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIEDVGPGV 223
Query: 236 KGAKVVID-SNTGRSKGYGFVRFGDE---NERTRAMTEMNGVFCSNRPMRVGVATPKKTY 291
+ +++ D +NT R++G+ FV + + + + M + N N P V A PK +
Sbjct: 224 ENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPT-VTWADPKSS- 281
Query: 292 GXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQF 351
P + A A + ++V + + S E L++ F +
Sbjct: 282 ------------------PEHSAAA--------AQVKALYVKNIPENTSTEQLKELFQRH 315
Query: 352 GDVVSVKIPVGKG----CGFVQFADRKNAEEAI 380
G+V + P GKG GFV +A+R +A +A+
Sbjct: 316 GEVTKIVTPPGKGGKRDFGFVHYAERSSALKAV 348
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/175 (20%), Positives = 78/175 (44%), Gaps = 5/175 (2%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGE-VVSAKVIRNK-QTGQSEGYGFVEFYSRATAEKVLQ 173
+++G++ E+ G V + ++I++ T ++ G+ FV +Y+ A A+ Q
Sbjct: 198 LFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQ 257
Query: 174 NFNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFS 233
+ A + WA + S AA +++V ++ + + L+E F R
Sbjct: 258 KMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELF-QRHG 316
Query: 234 SIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPK 288
+ K+V G + +GFV + + + +A+ + + +P+ V +A P+
Sbjct: 317 EV--TKIVTPPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQ 369
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 328 TTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV------GKGCGFVQFADRKNAEEAIH 381
+ +F+GGL D+ +EDLR + G++ V++ KG FV F + A++AI
Sbjct: 116 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIE 175
Query: 382 ALNGTVIGKQTVRLSWGRS 400
L+ +T+R S +
Sbjct: 176 ELHSKEFKGKTIRCSLSET 194
>AT4G00830.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:352782-354965 FORWARD
Length = 495
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/273 (20%), Positives = 118/273 (43%), Gaps = 50/273 (18%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++G L + E + + GE+ ++++++ +G S+GY FV F ++ A+K ++
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE- 176
Query: 176 NGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSI 235
L+ F R + + +F+G++ + T+ ++ +
Sbjct: 177 -------------LHSKEFKGKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIEDVGPGV 223
Query: 236 KGAKVVID-SNTGRSKGYGFVRFGDE---NERTRAMTEMNGVFCSNRPMRVGVATPKKTY 291
+ +++ D +NT R++G+ FV + + + + M + N N P V A PK +
Sbjct: 224 ENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQKMIDSNFKLEGNAPT-VTWADPKSS- 281
Query: 292 GXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQF 351
P + A A + ++V + + S E L++ F +
Sbjct: 282 ------------------PEHSAAA--------AQVKALYVKNIPENTSTEQLKELFQRH 315
Query: 352 GDVVSVKIPVGKG----CGFVQFADRKNAEEAI 380
G+V + P GKG GFV +A+R +A +A+
Sbjct: 316 GEVTKIVTPPGKGGKRDFGFVHYAERSSALKAV 348
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/175 (20%), Positives = 78/175 (44%), Gaps = 5/175 (2%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGE-VVSAKVIRNK-QTGQSEGYGFVEFYSRATAEKVLQ 173
+++G++ E+ G V + ++I++ T ++ G+ FV +Y+ A A+ Q
Sbjct: 198 LFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYSRQ 257
Query: 174 NFNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFS 233
+ A + WA + S AA +++V ++ + + L+E F R
Sbjct: 258 KMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELF-QRHG 316
Query: 234 SIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPK 288
+ K+V G + +GFV + + + +A+ + + +P+ V +A P+
Sbjct: 317 EV--TKIVTPPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQ 369
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 328 TTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV------GKGCGFVQFADRKNAEEAIH 381
+ +F+GGL D+ +EDLR + G++ V++ KG FV F + A++AI
Sbjct: 116 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIE 175
Query: 382 ALNGTVIGKQTVRLSWGRS 400
L+ +T+R S +
Sbjct: 176 ELHSKEFKGKTIRCSLSET 194
>AT4G16280.2 | Symbols: FCA | FCA; RNA binding |
chr4:9207180-9214428 REVERSE
Length = 747
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 87/178 (48%), Gaps = 10/178 (5%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++G + E + F G V+ +I++K+TGQ +G FV++ + A++ ++
Sbjct: 122 LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRAL 181
Query: 176 -NGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSS 234
N +P ++ +A GER T + +FVG L T+ ++E F +F
Sbjct: 182 HNQITLPGGTGPVQVRYAD---GERE-RIGTLEFKLFVGSLNKQATEKEVEEIF-LQFGH 236
Query: 235 IKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFC---SNRPMRVGVATPKK 289
++ ++ D +S+G GFV++ + A+ +NG + N+P+ V A PK+
Sbjct: 237 VEDVYLMRDEYR-QSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKR 293
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 81/188 (43%), Gaps = 36/188 (19%)
Query: 205 TSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERT 264
+S + +FVG + T+ ++ F + ++ ++ D TG+ +G FV++ +
Sbjct: 117 SSTVKLFVGSVPRTATEEEIRPYF-EQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDAD 175
Query: 265 RAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGH-PSNGAVAQGSQSDG 323
RA+ ++ + L GG P A G +
Sbjct: 176 RAIRALHN-----------------------------QITLPGGTGPVQVRYADGERERI 206
Query: 324 DSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKI-----PVGKGCGFVQFADRKNAEE 378
+ +FVG L+ +++++ + FLQFG V V + +GCGFV+++ ++ A
Sbjct: 207 GTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMA 266
Query: 379 AIHALNGT 386
AI LNGT
Sbjct: 267 AIDGLNGT 274
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 325 SNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVGK------GCGFVQFADRKNAEE 378
S+ +FVG + ++E++R F Q G+V+ V + K GC FV++A K+A+
Sbjct: 117 SSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADR 176
Query: 379 AIHALNGTV 387
AI AL+ +
Sbjct: 177 AIRALHNQI 185
>AT3G07810.2 | Symbols: | heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative | chr3:2492881-2495108
FORWARD
Length = 495
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 91/187 (48%), Gaps = 20/187 (10%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVL--- 172
+++G + +E + F+ GEV+ A +++++ TG++ G+GFV F A AE V+
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEK 67
Query: 173 QNFNGTM------MPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQE 226
N +G + +P DQ +N ++ S+ + IFVG L VT++ +
Sbjct: 68 HNIDGRLVEAKKAVPRDDQNM-VNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKT 126
Query: 227 TFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT----EMNGVFCSNRPMRV 282
F +F + V+ D NT R +G+GF+ + E + + E+NG + + V
Sbjct: 127 YF-EQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNG-----KMVEV 180
Query: 283 GVATPKK 289
A PK+
Sbjct: 181 KRAVPKE 187
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 82/189 (43%), Gaps = 28/189 (14%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
+F+G ++ D + L+E F S F + A ++ D TGR++G+GFV F D +TE
Sbjct: 8 LFIGGISWDTNEERLKEYF-SSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 270 MNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTT 329
+ + R + A P+ SN + QGS G
Sbjct: 67 KHNI--DGRLVEAKKAVPRDDQNMVNR--------------SNSSSIQGSPG-GPGRTRK 109
Query: 330 IFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV------GKGCGFVQFADRKNAEEAI--- 380
IFVGGL S +++ D + F QFG V + +G GF+ + + E+ +
Sbjct: 110 IFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKT 169
Query: 381 -HALNGTVI 388
H LNG ++
Sbjct: 170 FHELNGKMV 178
>AT3G07810.1 | Symbols: | heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative | chr3:2492881-2495058
FORWARD
Length = 494
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 91/187 (48%), Gaps = 20/187 (10%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVL--- 172
+++G + +E + F+ GEV+ A +++++ TG++ G+GFV F A AE V+
Sbjct: 8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEK 67
Query: 173 QNFNGTM------MPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQE 226
N +G + +P DQ +N ++ S+ + IFVG L VT++ +
Sbjct: 68 HNIDGRLVEAKKAVPRDDQNM-VNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKT 126
Query: 227 TFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT----EMNGVFCSNRPMRV 282
F +F + V+ D NT R +G+GF+ + E + + E+NG + + V
Sbjct: 127 YF-EQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNG-----KMVEV 180
Query: 283 GVATPKK 289
A PK+
Sbjct: 181 KRAVPKE 187
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 82/189 (43%), Gaps = 28/189 (14%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
+F+G ++ D + L+E F S F + A ++ D TGR++G+GFV F D +TE
Sbjct: 8 LFIGGISWDTNEERLKEYF-SSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 270 MNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTT 329
+ + R + A P+ SN + QGS G
Sbjct: 67 KHNI--DGRLVEAKKAVPRDDQNMVNR--------------SNSSSIQGSPG-GPGRTRK 109
Query: 330 IFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV------GKGCGFVQFADRKNAEEAI--- 380
IFVGGL S +++ D + F QFG V + +G GF+ + + E+ +
Sbjct: 110 IFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKT 169
Query: 381 -HALNGTVI 388
H LNG ++
Sbjct: 170 FHELNGKMV 178
>AT3G13224.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:4254855-4256021 FORWARD
Length = 231
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 80/158 (50%), Gaps = 5/158 (3%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
I++G LH + F GE+ + ++R++ TGQ G+GF+ F + +KV+++
Sbjct: 21 IFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED- 79
Query: 176 NGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSI 235
T + N Q AG +S+ + IFVG + VT+ L++ F +++ ++
Sbjct: 80 --THVINGKQVEIKRTIPKGAGGNQSKDIKTK-KIFVGGIPSTVTEDELKDFF-AKYGNV 135
Query: 236 KGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGV 273
+V+ D T RS+G+GFV F E +++ N +
Sbjct: 136 VEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMI 173
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 40/70 (57%)
Query: 114 RTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQ 173
+ I++G + + E+ + + FA G VV +VIR+ +T +S G+GFV F S +++L
Sbjct: 109 KKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLS 168
Query: 174 NFNGTMMPNT 183
N M +T
Sbjct: 169 KGNMIDMADT 178
>AT5G55550.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:22519303-22520884 REVERSE
Length = 448
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 92/198 (46%), Gaps = 32/198 (16%)
Query: 112 EIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKV 171
++ +++G + DE + + F++ G+VV A ++R++ TG++ G+GF+ F +E+V
Sbjct: 4 DLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERV 63
Query: 172 LQNFN---------GTMMPNTDQAFRLNWAS-------FSAGERRSEAATSDLSIFVGDL 215
+ + + +P DQ AS G R++ IFVG L
Sbjct: 64 IMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTK------KIFVGGL 117
Query: 216 AIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAM----TEMN 271
+T+ + F +F +I V+ D NT R +G+GF+ F ++ R + E+N
Sbjct: 118 PSSITEEEFKNYF-DQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELN 176
Query: 272 GVFCSNRPMRVGVATPKK 289
G + V A PK+
Sbjct: 177 GKL-----VEVKRAVPKE 189
>AT5G55550.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:22519361-22520884 REVERSE
Length = 460
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 92/198 (46%), Gaps = 32/198 (16%)
Query: 112 EIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKV 171
++ +++G + DE + + F++ G+VV A ++R++ TG++ G+GF+ F +E+V
Sbjct: 4 DLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERV 63
Query: 172 LQNFN---------GTMMPNTDQAFRLNWAS-------FSAGERRSEAATSDLSIFVGDL 215
+ + + +P DQ AS G R++ IFVG L
Sbjct: 64 IMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTK------KIFVGGL 117
Query: 216 AIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAM----TEMN 271
+T+ + F +F +I V+ D NT R +G+GF+ F ++ R + E+N
Sbjct: 118 PSSITEEEFKNYF-DQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELN 176
Query: 272 GVFCSNRPMRVGVATPKK 289
G + V A PK+
Sbjct: 177 GKL-----VEVKRAVPKE 189
>AT5G55550.3 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:22519361-22520884 REVERSE
Length = 460
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 92/198 (46%), Gaps = 32/198 (16%)
Query: 112 EIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKV 171
++ +++G + DE + + F++ G+VV A ++R++ TG++ G+GF+ F +E+V
Sbjct: 4 DLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERV 63
Query: 172 LQNFN---------GTMMPNTDQAFRLNWAS-------FSAGERRSEAATSDLSIFVGDL 215
+ + + +P DQ AS G R++ IFVG L
Sbjct: 64 IMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGRTK------KIFVGGL 117
Query: 216 AIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAM----TEMN 271
+T+ + F +F +I V+ D NT R +G+GF+ F ++ R + E+N
Sbjct: 118 PSSITEEEFKNYF-DQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFHELN 176
Query: 272 GVFCSNRPMRVGVATPKK 289
G + V A PK+
Sbjct: 177 GKL-----VEVKRAVPKE 189
>AT1G48920.1 | Symbols: ATNUC-L1, PARL1 | ATNUC-L1/PARL1 (PARALLEL
1); nucleic acid binding | chr1:18101854-18105090
FORWARD
Length = 557
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 79/176 (44%), Gaps = 24/176 (13%)
Query: 114 RTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQ 173
+T++ +L ++ V N F GEVV + N+ G G+G VEF S A+K L+
Sbjct: 297 KTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKALE 356
Query: 174 NFNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLS--------------IFVGDLAIDV 219
F+G P + RL+ A GER A + S IFV +
Sbjct: 357 -FHG--RPLLGREIRLDIAQ-ERGERGERPAFTPQSGNFRSGGDGGDEKKIFVKGFDASL 412
Query: 220 TDAMLQETFGSRFSS---IKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNG 272
++ ++ T FSS IK V ID +TG SKG ++ F + E+ E+NG
Sbjct: 413 SEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFSEGKEKA---LELNG 465
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 88/197 (44%), Gaps = 29/197 (14%)
Query: 203 AATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENE 262
AA ++F +L+ ++ A + E F + + + + G +G+G V F E
Sbjct: 292 AAGGSKTLFAANLSFNIERADV-ENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEE 350
Query: 263 RTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSD 322
+A+ E +G R +R+ +A + G +GG D
Sbjct: 351 AQKAL-EFHGRPLLGREIRLDIAQERGERGERPAFTPQSGNFRSGG-------------D 396
Query: 323 GDSNNTTIFVGGLDSDISDED----LRQPFLQFGDVVSVKIPV------GKGCGFVQFAD 372
G + IFV G D+ +S++D LR+ F G++ +V +P+ KG +++F++
Sbjct: 397 G-GDEKKIFVKGFDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFSE 455
Query: 373 RKNAEEAIHALNGTVIG 389
K E+A+ LNG+ +G
Sbjct: 456 GK--EKALE-LNGSDMG 469
>AT4G13850.3 | Symbols: GR-RBP2, GRP2, ATGRP2 | ATGRP2 (GLYCINE-RICH
RNA-BINDING PROTEIN 2) | chr4:8021310-8022061 FORWARD
Length = 144
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
+F+G L+ DA L++ F + F + AKV++D TGRS+G+GFV F DE T A++E
Sbjct: 37 LFIGGLSWGTDDASLRDAF-AHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 270 MNGVFCSNRPMRVGVATPKKT 290
M+G + R +RV A + +
Sbjct: 96 MDGKELNGRHIRVNPANDRPS 116
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++G L D+ + + FAH G+VV AKVI +++TG+S G+GFV F A +
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 176 NG 177
+G
Sbjct: 97 DG 98
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 328 TTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV------GKGCGFVQFADRKNAEEAIH 381
T +F+GGL D LR F FGDVV K+ V +G GFV F D A AI
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 382 ALNGTVIGKQTVRLS 396
++G + + +R++
Sbjct: 95 EMDGKELNGRHIRVN 109
>AT4G13850.2 | Symbols: GR-RBP2, GRP2, ATGRP2 | ATGRP2 (GLYCINE-RICH
RNA-BINDING PROTEIN 2); RNA binding |
chr4:8021310-8022061 FORWARD
Length = 153
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
+F+G L+ DA L++ F + F + AKV++D TGRS+G+GFV F DE T A++E
Sbjct: 37 LFIGGLSWGTDDASLRDAF-AHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 270 MNGVFCSNRPMRVGVATPKKT 290
M+G + R +RV A + +
Sbjct: 96 MDGKELNGRHIRVNPANDRPS 116
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++G L D+ + + FAH G+VV AKVI +++TG+S G+GFV F A +
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 176 NG 177
+G
Sbjct: 97 DG 98
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 328 TTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV------GKGCGFVQFADRKNAEEAIH 381
T +F+GGL D LR F FGDVV K+ V +G GFV F D A AI
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 382 ALNGTVIGKQTVRLS 396
++G + + +R++
Sbjct: 95 EMDGKELNGRHIRVN 109
>AT4G13850.1 | Symbols: GR-RBP2, GRP2, ATGRP2 | ATGRP2 (GLYCINE-RICH
RNA-BINDING PROTEIN 2); RNA binding / double-stranded
DNA binding / single-stranded DNA binding |
chr4:8021310-8022061 FORWARD
Length = 158
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
+F+G L+ DA L++ F + F + AKV++D TGRS+G+GFV F DE T A++E
Sbjct: 37 LFIGGLSWGTDDASLRDAF-AHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 270 MNGVFCSNRPMRVGVATPKKT 290
M+G + R +RV A + +
Sbjct: 96 MDGKELNGRHIRVNPANDRPS 116
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++G L D+ + + FAH G+VV AKVI +++TG+S G+GFV F A +
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 176 NG 177
+G
Sbjct: 97 DG 98
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 328 TTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV------GKGCGFVQFADRKNAEEAIH 381
T +F+GGL D LR F FGDVV K+ V +G GFV F D A AI
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 382 ALNGTVIGKQTVRLS 396
++G + + +R++
Sbjct: 95 EMDGKELNGRHIRVN 109
>AT4G13850.4 | Symbols: GR-RBP2, GRP2, ATGRP2 | ATGRP2 (GLYCINE-RICH
RNA-BINDING PROTEIN 2) | chr4:8021310-8022061 FORWARD
Length = 129
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
+F+G L+ DA L++ F + F + AKV++D TGRS+G+GFV F DE T A++E
Sbjct: 37 LFIGGLSWGTDDASLRDAF-AHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 270 MNGVFCSNRPMRVGVATPKKT 290
M+G + R +RV A + +
Sbjct: 96 MDGKELNGRHIRVNPANDRPS 116
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++G L D+ + + FAH G+VV AKVI +++TG+S G+GFV F A +
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 176 NG 177
+G
Sbjct: 97 DG 98
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 328 TTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV------GKGCGFVQFADRKNAEEAIH 381
T +F+GGL D LR F FGDVV K+ V +G GFV F D A AI
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 382 ALNGTVIGKQTVRLS 396
++G + + +R++
Sbjct: 95 EMDGKELNGRHIRVN 109
>AT4G14300.1 | Symbols: | heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative | chr4:8231175-8232781
FORWARD
Length = 411
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 81/188 (43%), Gaps = 22/188 (11%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
+FVG ++ + + L+E F + + + A V+ D TGR +G+GFV F D + R + E
Sbjct: 8 LFVGGISWETDEDKLREHF-TNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQE 66
Query: 270 MNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTT 329
+ + R + V A ++ G N ++ S D +
Sbjct: 67 KHSI--DTREVDVKRAMSREEQ-------------QVSGRTGNLNTSRSSGGDAYNKTKK 111
Query: 330 IFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVG------KGCGFVQFADRKNAEEAIHAL 383
IFVGGL ++DE+ RQ F +G V V I +G GFV F + +H
Sbjct: 112 IFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKT 171
Query: 384 NGTVIGKQ 391
+ GKQ
Sbjct: 172 FHDLSGKQ 179
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 72/160 (45%), Gaps = 19/160 (11%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++G + DE+ + F + GEV A V+R+K TG+ G+GFV F + ++VLQ
Sbjct: 8 LFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQEK 67
Query: 176 NGTMMPNTD--------------QAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTD 221
+ D + LN + S G +A IFVG L +TD
Sbjct: 68 HSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGG----DAYNKTKKIFVGGLPPTLTD 123
Query: 222 AMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDEN 261
++ F + + ++ D T R +G+GFV F E+
Sbjct: 124 EEFRQYF-EVYGPVTDVAIMYDQATNRPRGFGFVSFDSED 162
>AT1G58470.1 | Symbols: RBP1, XF41, ATRBP1 | ATRBP1 (ARABIDOPSIS
THALIANA RNA-BINDING PROTEIN 1); RNA binding |
chr1:21731039-21732204 FORWARD
Length = 360
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 89/180 (49%), Gaps = 14/180 (7%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
+FVG +A + ++ L++ F SR+ ++ A V + TG+ +G+GFVRF ++ + +A+ +
Sbjct: 8 LFVGGIAKETSEEALKQYF-SRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRD 66
Query: 270 MNGVFCSNRPMRVGVATPK-KTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNT 328
+ F +P+ V A K + Y V NG + + S + S
Sbjct: 67 TH--FILGKPVDVRKAIRKHELYQQPFSMQFLERKV----QQMNGGLREMSSNGVTSRTK 120
Query: 329 TIFVGGLDSDISDEDLRQPFLQFG---DVVSVKIPV---GKGCGFVQFADRKNAEEAIHA 382
IFVGGL S+ ++E+ + F +FG DVV + V +G GFV + + E + +
Sbjct: 121 KIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQS 180
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 83/194 (42%), Gaps = 22/194 (11%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++G + E + F+ G V+ A V + K TG+ G+GFV F + K L++
Sbjct: 8 LFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRDT 67
Query: 176 NGTMMPNTD--QAFR---LNWASFSAG--ERRSEAATSDL-------------SIFVGDL 215
+ + D +A R L FS ER+ + L IFVG L
Sbjct: 68 HFILGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTKKIFVGGL 127
Query: 216 AIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFC 275
+ + T+ + F RF V+ D T R +G+GFV + D + + + N
Sbjct: 128 SSNTTEEEFKSYF-ERFGRTTDVVVMHDGVTNRPRGFGFVTY-DSEDSVEVVMQSNFHEL 185
Query: 276 SNRPMRVGVATPKK 289
S++ + V A PK+
Sbjct: 186 SDKRVEVKRAIPKE 199
>AT2G16940.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:7349951-7354134 REVERSE
Length = 561
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 95/194 (48%), Gaps = 24/194 (12%)
Query: 209 SIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT 268
++F +A+ T+ + E F SR ++ ++++D + RS+G G+V F D A+
Sbjct: 183 TVFAYQIALRATERDVYEFF-SRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAIA 241
Query: 269 EMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNT 328
++G +P+ V + +K +L G S GA
Sbjct: 242 -LSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGML--GPYSGGA-------------R 285
Query: 329 TIFVGGLDSDISDEDLRQPFLQFGDVVSVKIP-----VGKGCGFVQFADRKNAEEAIHAL 383
++VG L ++S++DLR+ F FG V V++P + KG GFVQFA ++A A++ L
Sbjct: 286 RLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNALN-L 344
Query: 384 NGTV-IGKQTVRLS 396
NG + I + +++S
Sbjct: 345 NGQLEIAGRAIKVS 358
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 88/192 (45%), Gaps = 31/192 (16%)
Query: 114 RTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVL- 172
RT++ + E V+ F+ G+V ++I ++ + +S G G+VEFY + +
Sbjct: 182 RTVFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEFYDTMSVPMAIA 241
Query: 173 ---QNFNG--TMMPNTDQAFRLNWAS------------FSAGERRSEAATSDLSIFVGDL 215
Q G M+ ++ L ++ +S G RR ++VG+L
Sbjct: 242 LSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGMLGPYSGGARR---------LYVGNL 292
Query: 216 AIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVF- 274
I++++ L++ F S F S++ +V D TG KG+GFV+F E R +NG
Sbjct: 293 HINMSEDDLRKVFES-FGSVELVQVPRD-ETGLCKGFGFVQFA-RLEDARNALNLNGQLE 349
Query: 275 CSNRPMRVGVAT 286
+ R ++V T
Sbjct: 350 IAGRAIKVSAVT 361
>AT5G04280.1 | Symbols: | glycine-rich RNA-binding protein |
chr5:1192462-1195414 FORWARD
Length = 310
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 203 AATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENE 262
AA IFVG L+ +VTD L+ F SRF I +++++ +TGRS+G+GF+ F D
Sbjct: 2 AAKEGSRIFVGGLSPEVTDRDLERAF-SRFGDILDCQIMLERDTGRSRGFGFITFADRRA 60
Query: 263 RTRAMTEMNGVFCSNRPMRVGVATPK 288
++ EM+G +R + V A PK
Sbjct: 61 MDESIREMHGRDFGDRVISVNRAEPK 86
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 11/89 (12%)
Query: 328 TTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV------GKGCGFVQFADRKNAEEAIH 381
+ IFVGGL +++D DL + F +FGD++ +I + +G GF+ FADR+ +E+I
Sbjct: 7 SRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIR 66
Query: 382 ALNGTVIGKQTVRLS-----WGRSPGNKH 405
++G G + + ++ GR G H
Sbjct: 67 EMHGRDFGDRVISVNRAEPKLGRDDGESH 95
>AT5G09880.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:3081647-3085180 REVERSE
Length = 527
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 93/195 (47%), Gaps = 30/195 (15%)
Query: 209 SIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT 268
++F + + T+ + E F S+ ++ ++++D N+ RSKG G++ F D A+
Sbjct: 169 TVFAYQMPLKATERDVYEFF-SKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA 227
Query: 269 EMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNT 328
++G +P+ V + +K + + G P++
Sbjct: 228 -LSGQLFLGQPVMVKPSEAEKNLAQSN------STTVGGTGPAD---------------R 265
Query: 329 TIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVG------KGCGFVQFADRKNAEEAIHA 382
++VG L ++S+ LRQ F FG V V++P+ KG GF+QF ++++ A A
Sbjct: 266 KLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIA 325
Query: 383 LNGTV-IGKQTVRLS 396
LNG + I +T+++S
Sbjct: 326 LNGKLEIAGRTIKVS 340
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 79/163 (48%), Gaps = 6/163 (3%)
Query: 114 RTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQ 173
RT++ + E V+ F+ G+V ++I ++ + +S+G G++EFY + +
Sbjct: 168 RTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIA 227
Query: 174 NFNGTMMPNTDQAFRLNWASFSAGERRSEAA----TSDLSIFVGDLAIDVTDAMLQETFG 229
+G + + + A + + S +D ++VG+L ++++ L++ F
Sbjct: 228 -LSGQLFLGQPVMVKPSEAEKNLAQSNSTTVGGTGPADRKLYVGNLHFNMSELQLRQIFE 286
Query: 230 SRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNG 272
+ F ++ ++ +D TG+ KG+GF++F A +NG
Sbjct: 287 A-FGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALNG 328
>AT3G52150.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:19353052-19354068 FORWARD
Length = 253
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 76/179 (42%), Gaps = 8/179 (4%)
Query: 114 RTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQ 173
R +++G++ + + G V +V+ +K +G+S +GF S A V++
Sbjct: 76 RRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVE 135
Query: 174 NFNGTMMPNTDQAFRLNWASFSAGERRSEAATSD-------LSIFVGDLAIDVTDAMLQE 226
NG + + + ++ S + D ++VG+LA VT ML+
Sbjct: 136 KLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLEN 195
Query: 227 TFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVA 285
F + + AKV T +S G+GFV F E + A+ +N + +RV A
Sbjct: 196 LFSEK-GKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253
>AT3G52150.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:19353052-19354068 FORWARD
Length = 253
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 76/179 (42%), Gaps = 8/179 (4%)
Query: 114 RTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQ 173
R +++G++ + + G V +V+ +K +G+S +GF S A V++
Sbjct: 76 RRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVE 135
Query: 174 NFNGTMMPNTDQAFRLNWASFSAGERRSEAATSD-------LSIFVGDLAIDVTDAMLQE 226
NG + + + ++ S + D ++VG+LA VT ML+
Sbjct: 136 KLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLEN 195
Query: 227 TFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVA 285
F + + AKV T +S G+GFV F E + A+ +N + +RV A
Sbjct: 196 LFSEK-GKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253
>AT1G45100.1 | Symbols: | polyadenylate-binding protein, putative /
PABP, putative | chr1:17053071-17054629 FORWARD
Length = 497
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 117/280 (41%), Gaps = 43/280 (15%)
Query: 134 FAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQAFRLNWAS 193
F +VVS +++ N + G+ GYGFVEF S A K L+ NG + N S
Sbjct: 178 FNGVAQVVSVRLVVNHE-GKHVGYGFVEFASAYGANKALEEKNGEYLHNHKILLMKGHES 236
Query: 194 FSAGERRSEAATSDLSIFVGDL--AIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKG 251
E EAA + ++FV +L +I ++D + F + +++++S G+ G
Sbjct: 237 PGFAE---EAAITK-TLFVANLRDSIQISDII---NFFKDVGEVVHVRLIVNSQ-GKHAG 288
Query: 252 YGFVRFGDENERTRAMTEMNGVFCSNRPMRV-GVAT-----PK-----KTYGXXXXXXXX 300
+GFV F NE +A+ + NG + N + + G T PK K +
Sbjct: 289 WGFVEFASANEAEKALVK-NGEYLHNYKISLDGAKTAPHRPPKFCLDHKVWYEDYLRRES 347
Query: 301 XAVVLAGGHPSNGAVAQGSQSDGD------SNNTTIFVGGL--DSDISDEDLRQPFLQFG 352
+ G +G D + T+FV L + + + F G
Sbjct: 348 LLIKEVEG-------VEGLDETPDFLEEVAARKNTVFVANLPYNCRLIVPTIINFFSDVG 400
Query: 353 DVVSVKIPVGK-----GCGFVQFADRKNAEEAIHALNGTV 387
++V ++I V GCGFV+F AE+A+ G +
Sbjct: 401 EIVHIRIIVDHMGEPVGCGFVEFNSSNEAEKALQKKTGKI 440
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | GR-RBP4/GRP4 (GLYCINE-RICH
RNA-BINDING PROTEIN 4); RNA binding |
chr3:8606769-8607684 REVERSE
Length = 136
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
+FVG L+ D+ L++ F S F + A V+ D TGRS+G+GFV F E+ A+ E
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTS-FGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 270 MNGVFCSNRPMRVGVATPKKT 290
M+G + R +RV +AT + +
Sbjct: 96 MDGKELNGRQIRVNLATERSS 116
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++G L D++ + F GEV A VI +++TG+S G+GFV F +A ++
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 176 NGTMMPNTDQAFRLNWAS 193
+G + + R+N A+
Sbjct: 97 DGKEL--NGRQIRVNLAT 112
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | GR-RBP4/GRP4 (GLYCINE-RICH
RNA-BINDING PROTEIN 4); RNA binding / double-stranded
DNA binding / single-stranded DNA binding |
chr3:8606769-8607684 REVERSE
Length = 136
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
+FVG L+ D+ L++ F S F + A V+ D TGRS+G+GFV F E+ A+ E
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTS-FGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 270 MNGVFCSNRPMRVGVATPKKT 290
M+G + R +RV +AT + +
Sbjct: 96 MDGKELNGRQIRVNLATERSS 116
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++G L D++ + F GEV A VI +++TG+S G+GFV F +A ++
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 176 NGTMMPNTDQAFRLNWAS 193
+G + + R+N A+
Sbjct: 97 DGKEL--NGRQIRVNLAT 112
>AT2G41060.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:17134216-17135571 FORWARD
Length = 451
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 6/148 (4%)
Query: 132 NCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVL---QNFNGTMMPNTDQAF- 187
+ F GE+ K + +K +GQS+GYGF+ F SR+ A L Q GT M A
Sbjct: 146 DAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQPQKKIGTRMTACQLASI 205
Query: 188 -RLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNT 246
+ A + I+V +++ D+ L E F SRF I+ + +D T
Sbjct: 206 GPVQGNPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFF-SRFGEIEEGPLGLDKAT 264
Query: 247 GRSKGYGFVRFGDENERTRAMTEMNGVF 274
GR KG+ + +A+ E + F
Sbjct: 265 GRPKGFALFVYRSLESAKKALEEPHKTF 292
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 27/186 (14%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
IFV L D L + F ++ I+ K V+D +G+SKGYGF+
Sbjct: 130 IFVHGLGWDTKADSLIDAF-KQYGEIEDCKCVVDKVSGQSKGYGFI-------------- 174
Query: 270 MNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTT 329
+F S R + P+K G ++ G+P VA + ++
Sbjct: 175 ---LFKSRSGARNALKQPQKKIGTRMTACQLASIGPVQGNP---VVAPAQHFNPENVQRK 228
Query: 330 IFVGGLDSDISDEDLRQPFLQFGDV----VSVKIPVGKGCGFVQFADR--KNAEEAIHAL 383
I+V + +DI + L + F +FG++ + + G+ GF F R ++A++A+
Sbjct: 229 IYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEP 288
Query: 384 NGTVIG 389
+ T G
Sbjct: 289 HKTFEG 294
>AT2G41060.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:17134216-17135571 FORWARD
Length = 451
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 6/148 (4%)
Query: 132 NCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVL---QNFNGTMMPNTDQAF- 187
+ F GE+ K + +K +GQS+GYGF+ F SR+ A L Q GT M A
Sbjct: 146 DAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALKQPQKKIGTRMTACQLASI 205
Query: 188 -RLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNT 246
+ A + I+V +++ D+ L E F SRF I+ + +D T
Sbjct: 206 GPVQGNPVVAPAQHFNPENVQRKIYVSNVSADIDPQKLLEFF-SRFGEIEEGPLGLDKAT 264
Query: 247 GRSKGYGFVRFGDENERTRAMTEMNGVF 274
GR KG+ + +A+ E + F
Sbjct: 265 GRPKGFALFVYRSLESAKKALEEPHKTF 292
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 27/186 (14%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
IFV L D L + F ++ I+ K V+D +G+SKGYGF+
Sbjct: 130 IFVHGLGWDTKADSLIDAF-KQYGEIEDCKCVVDKVSGQSKGYGFI-------------- 174
Query: 270 MNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTT 329
+F S R + P+K G ++ G+P VA + ++
Sbjct: 175 ---LFKSRSGARNALKQPQKKIGTRMTACQLASIGPVQGNP---VVAPAQHFNPENVQRK 228
Query: 330 IFVGGLDSDISDEDLRQPFLQFGDV----VSVKIPVGKGCGFVQFADR--KNAEEAIHAL 383
I+V + +DI + L + F +FG++ + + G+ GF F R ++A++A+
Sbjct: 229 IYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEEP 288
Query: 384 NGTVIG 389
+ T G
Sbjct: 289 HKTFEG 294
>AT5G19960.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:6744031-6746135 FORWARD
Length = 337
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 50/73 (68%), Gaps = 5/73 (6%)
Query: 329 TIFVGGLDSDISDEDLRQPFLQFGDVVSVKI-----PVGKGCGFVQFADRKNAEEAIHAL 383
+++VGGL DI++E +R+ F +G V++VKI GK GFV F++R++A++AI +
Sbjct: 8 SVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIEDM 67
Query: 384 NGTVIGKQTVRLS 396
+G IG + VR++
Sbjct: 68 DGKSIGGRAVRVN 80
>AT3G13570.1 | Symbols: SCL30a | SCL30a (SC35-like splicing factor
30a); RNA binding | chr3:4429571-4431609 REVERSE
Length = 262
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 328 TTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV------GKGCGFVQFADRKNAEEAIH 381
T++ V L D EDLR+PF QFG V + +P +G GF+QF D +A EA H
Sbjct: 37 TSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKH 96
Query: 382 ALNGTVI 388
++G ++
Sbjct: 97 QMDGYLL 103
>AT2G35410.1 | Symbols: | 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative |
chr2:14905420-14906669 FORWARD
Length = 308
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 80/178 (44%), Gaps = 17/178 (9%)
Query: 114 RTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQ 173
R +++ +L M N + F G V + ++IR K G++ G+ FV S A+ +
Sbjct: 95 RKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKD-GKNRGFAFVTMASGEEAQAAID 153
Query: 174 NFNGTMMPNTDQAFRLNWASFSAG-ERRSEAATSDL----------SIFVGDLAIDVTDA 222
F+ + R+ SF+ ++ + + +DL ++V +LA
Sbjct: 154 KFDTFQVSG-----RIISVSFARRFKKPTPKSPNDLPSPAPGDTRHKLYVSNLAWKARST 208
Query: 223 MLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPM 280
L+E F + + A+VV GRS GYGFV F E A+T++NG RP+
Sbjct: 209 HLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITKLNGKEIMGRPI 266
>AT4G39260.3 | Symbols: GR-RBP8, ATGRP8, CCR1 | ATGRP8/GR-RBP8
(COLD, CIRCADIAN RHYTHM, AND RNA BINDING 1, GLYCINE-RICH
PROTEIN 8); RNA binding | chr4:18274160-18274952 REVERSE
Length = 92
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 211 FVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEM 270
FVG LA D LQ TF S+F + +K++ D +GRS+G+GFV F DE A+ EM
Sbjct: 9 FVGGLAWATNDEDLQRTF-SQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEM 67
Query: 271 NGVFCSNRPMRVGVATPKKTYG 292
NG R + V A + + G
Sbjct: 68 NGKELDGRVITVNEAQSRGSGG 89
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 331 FVGGLDSDISDEDLRQPFLQFGDVVSVKIP------VGKGCGFVQFADRKNAEEAIHALN 384
FVGGL +DEDL++ F QFGDV+ KI +G GFV F D K +AI +N
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 385 GTVIGKQTVRLSWGRSPGN 403
G + + + ++ +S G+
Sbjct: 69 GKELDGRVITVNEAQSRGS 87
>AT5G61030.1 | Symbols: GR-RBP3 | GR-RBP3 (glycine-rich RNA-binding
protein 3); RNA binding | chr5:24578096-24579378 FORWARD
Length = 309
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++G + + MDE+ + F GEVV +VI +++TG+S G+GFV F S A +Q
Sbjct: 42 LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQAL 101
Query: 176 NG 177
+G
Sbjct: 102 DG 103
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 46/78 (58%), Gaps = 6/78 (7%)
Query: 326 NNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV------GKGCGFVQFADRKNAEEA 379
+++ +F+GG+ + ++ LR+ F ++G+VV ++ + +G GFV F + A A
Sbjct: 38 SSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSA 97
Query: 380 IHALNGTVIGKQTVRLSW 397
I AL+G + + V++++
Sbjct: 98 IQALDGRDLHGRVVKVNY 115
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
+F+G +A + + L+E F +++ + +V++D TGRS+G+GFV F + A+
Sbjct: 42 LFIGGMAYSMDEDSLREAF-TKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Query: 270 MNGVFCSNRPMRVGVATPK 288
++G R ++V A +
Sbjct: 101 LDGRDLHGRVVKVNYANDR 119
>AT1G60650.2 | Symbols: | glycine-rich RNA-binding protein,
putative | chr1:22343754-22345813 FORWARD
Length = 292
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
IFVG L+ DVT+ L+ TF R+ I ++++ +TGR +G+GF+ F D A+
Sbjct: 14 IFVGGLSWDVTERQLESTF-DRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 270 MNGVFCSNRPMRVGVATPK 288
M+G N+ + V A PK
Sbjct: 73 MHGRELGNKVISVNKAEPK 91
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 327 NTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVG------KGCGFVQFADRKNAEEAI 380
+ IFVGGL D+++ L F ++G + +I VG +G GF+ F DR+ A++AI
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70
Query: 381 HALNGTVIGKQTV 393
++G +G + +
Sbjct: 71 KHMHGRELGNKVI 83
>AT1G60650.1 | Symbols: | glycine-rich RNA-binding protein,
putative | chr1:22343754-22345813 FORWARD
Length = 292
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
IFVG L+ DVT+ L+ TF R+ I ++++ +TGR +G+GF+ F D A+
Sbjct: 14 IFVGGLSWDVTERQLESTF-DRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 270 MNGVFCSNRPMRVGVATPK 288
M+G N+ + V A PK
Sbjct: 73 MHGRELGNKVISVNKAEPK 91
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 327 NTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVG------KGCGFVQFADRKNAEEAI 380
+ IFVGGL D+++ L F ++G + +I VG +G GF+ F DR+ A++AI
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70
Query: 381 HALNGTVIGKQTV 393
++G +G + +
Sbjct: 71 KHMHGRELGNKVI 83
>AT4G39260.2 | Symbols: GR-RBP8, ATGRP8, CCR1 | ATGRP8/GR-RBP8
(COLD, CIRCADIAN RHYTHM, AND RNA BINDING 1, GLYCINE-RICH
PROTEIN 8); RNA binding | chr4:18274160-18274952 REVERSE
Length = 126
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 211 FVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEM 270
FVG LA D LQ TF S+F + +K++ D +GRS+G+GFV F DE A+ EM
Sbjct: 9 FVGGLAWATNDEDLQRTF-SQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEM 67
Query: 271 NGVFCSNRPMRVGVA 285
NG R + V A
Sbjct: 68 NGKELDGRVITVNEA 82
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 35/61 (57%), Gaps = 6/61 (9%)
Query: 331 FVGGLDSDISDEDLRQPFLQFGDVVSVKIP------VGKGCGFVQFADRKNAEEAIHALN 384
FVGGL +DEDL++ F QFGDV+ KI +G GFV F D K +AI +N
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 385 G 385
G
Sbjct: 69 G 69
>AT4G39260.1 | Symbols: GR-RBP8, ATGRP8, CCR1 | ATGRP8/GR-RBP8
(COLD, CIRCADIAN RHYTHM, AND RNA BINDING 1, GLYCINE-RICH
PROTEIN 8); RNA binding | chr4:18274160-18274952 REVERSE
Length = 169
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 211 FVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEM 270
FVG LA D LQ TF S+F + +K++ D +GRS+G+GFV F DE A+ EM
Sbjct: 9 FVGGLAWATNDEDLQRTF-SQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEM 67
Query: 271 NGVFCSNRPMRVGVA 285
NG R + V A
Sbjct: 68 NGKELDGRVITVNEA 82
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 35/61 (57%), Gaps = 6/61 (9%)
Query: 331 FVGGLDSDISDEDLRQPFLQFGDVVSVKIP------VGKGCGFVQFADRKNAEEAIHALN 384
FVGGL +DEDL++ F QFGDV+ KI +G GFV F D K +AI +N
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 385 G 385
G
Sbjct: 69 G 69
>AT1G01080.1 | Symbols: | 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative |
chr1:45503-46789 REVERSE
Length = 293
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 77/164 (46%), Gaps = 13/164 (7%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++ ++ D + + F G V+S +V RN QTG+S G G+V S +A+ + +
Sbjct: 110 LYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASL 169
Query: 176 NGTMMPNTDQAFRLNWASFSAGERRSEAAT-----------SDLSIFVGDLAIDVTDAML 224
+GT + + R + + G RR+ S ++VG+L L
Sbjct: 170 DGTEVGGREMRVRYS-VDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDGL 228
Query: 225 QETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT 268
+ F S+F +I +V+ D TGR++ + F+ F ER A++
Sbjct: 229 RNHF-SKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALS 271
>AT5G25060.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:8634222-8639987 REVERSE
Length = 946
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Query: 318 GSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKI---------PVGKGCGFV 368
GS DGD T ++VG L + + L + F +FG + SVKI + CGFV
Sbjct: 169 GSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQRNCGFV 228
Query: 369 QFADRKNAEEAIHALNGTVIGKQTVRLSWGRS 400
F +R + + A + G ++ + +++ WG++
Sbjct: 229 SFMNRADGQAAKDEMQGIIVYEYELKIGWGKA 260
>AT5G10800.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:3412899-3418383 REVERSE
Length = 947
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Query: 318 GSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKI---------PVGKGCGFV 368
GS DGD T ++V L S + + L + F +FG + SVKI + CGFV
Sbjct: 177 GSLDDGDPQTTNLYVVNLSSKVDENFLLRTFGRFGPIASVKIMWPRTEEEKRRERHCGFV 236
Query: 369 QFADRKNAEEAIHALNGTVIGKQTVRLSWGR 399
F +R + E A + G ++ + +++ WG+
Sbjct: 237 AFMNRADGEAAKEKMQGIIVYEYELKIGWGK 267
>AT4G03110.1 | Symbols: | RNA-binding protein, putative |
chr4:1376612-1379275 REVERSE
Length = 441
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 75/158 (47%), Gaps = 10/158 (6%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQN- 174
+++G + M E+ + F V +I++K T S G F+ SR A+K++
Sbjct: 20 LFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNAC 79
Query: 175 FNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSS 234
N +P + ++ +A E + +FVG L +V++A +Q F S++ +
Sbjct: 80 HNKKTLPGANSLLQVKYAD-------GELERLEHKLFVGMLPKNVSEAEVQSLF-SKYGT 131
Query: 235 IKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNG 272
IK +++ + SKG F+++ + + AM +NG
Sbjct: 132 IKDLQILRGAQQ-TSKGCAFLKYETKEQAVSAMESING 168
>AT1G78260.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:29452210-29455074 FORWARD
Length = 287
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 205 TSDLSIFVGDLAIDV-TDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENER 263
T+ +FVG LA + TD M + + +F I A ++ D NTG+SKGYGFV F + +
Sbjct: 14 TTYTKVFVGGLAWETPTDEMRR--YFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSA 71
Query: 264 TRAMTEMNGV 273
TRA+ + N V
Sbjct: 72 TRAVADPNPV 81
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 323 GDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV------GKGCGFVQFADRKNA 376
GD+ T +FVGGL + +++R+ F QFG+++ I KG GFV F + +A
Sbjct: 12 GDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSA 71
Query: 377 EEAIHALNGTVIGKQ 391
A+ N + G++
Sbjct: 72 TRAVADPNPVIDGRK 86
>AT4G03110.2 | Symbols: | RNA-binding protein, putative |
chr4:1376710-1379275 REVERSE
Length = 439
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 75/158 (47%), Gaps = 10/158 (6%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQ-N 174
+++G + M E+ + F V +I++K T S G F+ SR A+K++
Sbjct: 20 LFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNAC 79
Query: 175 FNGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSS 234
N +P + ++ +A E + +FVG L +V++A +Q F S++ +
Sbjct: 80 HNKKTLPGANSLLQVKYAD-------GELERLEHKLFVGMLPKNVSEAEVQSLF-SKYGT 131
Query: 235 IKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNG 272
IK +++ + SKG F+++ + + AM +NG
Sbjct: 132 IKDLQILRGAQQ-TSKGCAFLKYETKEQAVSAMESING 168
>AT5G06210.1 | Symbols: | RNA-binding protein, putative |
chr5:1878498-1879516 FORWARD
Length = 146
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
+F+G L+ T+ L E F S+ + A++V+D + RSKG+GFV F +E +A+ E
Sbjct: 36 LFIGGLSFCTTEQGLSEAF-SKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 270 MNGVFCSNRPMRVGVATPKKTYG 292
NG + R + V A K++ G
Sbjct: 95 FNGQQLNGRTIFVDYAKAKQSLG 117
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++G L E + F+ G+VV A+++ ++ + +S+G+GFV F S A+K L F
Sbjct: 36 LFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEF 95
Query: 176 NGTMM 180
NG +
Sbjct: 96 NGQQL 100
>AT3G53460.2 | Symbols: CP29 | CP29 (chloroplast 29 kDa
ribonucleoprotein); RNA binding / poly(U) binding |
chr3:19830716-19832401 REVERSE
Length = 342
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 205 TSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERT 264
+ DL +FVG+L+ +V A L + F S +++ +V+ D TGRS+G+GFV E
Sbjct: 96 SPDLKLFVGNLSFNVDSAQLAQLFESA-GNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVE 154
Query: 265 RAMTEMNGVFCSNRPMRVGVATP 287
A + NG RP+RV P
Sbjct: 155 AAAQQFNGYEFEGRPLRVNAGPP 177
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 39/63 (61%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++G+L +D+ + N F G+VV A+VI ++ +G+S+G+GFV S +K + +
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 176 NGT 178
NG
Sbjct: 319 NGA 321
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
++VG+L+ V D L+ F + ++ A+V+ D ++GRSKG+GFV E +A+
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVE-ARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 270 MNGVFCSNRPMRVGVATPKKTYG 292
+NG R +RV A + G
Sbjct: 318 LNGADLDGRQIRVSEAEARPPRG 340
>AT3G53460.1 | Symbols: CP29 | CP29 (chloroplast 29 kDa
ribonucleoprotein); RNA binding / poly(U) binding |
chr3:19830716-19832401 REVERSE
Length = 342
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 205 TSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERT 264
+ DL +FVG+L+ +V A L + F S +++ +V+ D TGRS+G+GFV E
Sbjct: 96 SPDLKLFVGNLSFNVDSAQLAQLFESA-GNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVE 154
Query: 265 RAMTEMNGVFCSNRPMRVGVATP 287
A + NG RP+RV P
Sbjct: 155 AAAQQFNGYEFEGRPLRVNAGPP 177
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 39/63 (61%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++G+L +D+ + N F G+VV A+VI ++ +G+S+G+GFV S +K + +
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 176 NGT 178
NG
Sbjct: 319 NGA 321
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
++VG+L+ V D L+ F + ++ A+V+ D ++GRSKG+GFV E +A+
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVE-ARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 270 MNGVFCSNRPMRVGVATPKKTYG 292
+NG R +RV A + G
Sbjct: 318 LNGADLDGRQIRVSEAEARPPRG 340
>AT2G46780.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:19236586-19238017 FORWARD
Length = 304
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 205 TSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERT 264
T IFVG LA + ++ F +F I A V+ D NTGRSKGYGFV F +
Sbjct: 19 TKLTKIFVGGLAWETQRDTMRRYF-EQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAM 77
Query: 265 RAMTEMNGV 273
RA MN V
Sbjct: 78 RACQNMNPV 86
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 12/84 (14%)
Query: 320 QSDGDSNNTT------IFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV------GKGCGF 367
Q +G +NNTT IFVGGL + + +R+ F QFG++V + KG GF
Sbjct: 8 QMEGGNNNTTDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGF 67
Query: 368 VQFADRKNAEEAIHALNGTVIGKQ 391
V F + + A A +N + G++
Sbjct: 68 VTFKEAEAAMRACQNMNPVIDGRR 91
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 112 EIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKV 171
++ I++G L + + F GE+V A VI +K TG+S+GYGFV F A +
Sbjct: 20 KLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRA 79
Query: 172 LQNFNGTM 179
QN N +
Sbjct: 80 CQNMNPVI 87
>AT3G08000.1 | Symbols: | RNA-binding protein, putative |
chr3:2555040-2555835 REVERSE
Length = 143
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
+F+G L+ V + L++ F S F + ++ D +GRS+G+GFV F +E + A
Sbjct: 43 LFIGGLSWSVDEQSLKDAFSS-FGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDA 101
Query: 270 MNGVFCSNRPMRVGVA 285
M+G RP+R+ A
Sbjct: 102 MDGKGLLGRPLRISFA 117
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 330 IFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVGKGC------GFVQFADRKNAEEAIHAL 383
+F+GGL + ++ L+ F FG+V V+I KG GFV FA+ +A A A+
Sbjct: 43 LFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAM 102
Query: 384 NGTVIGKQTVRLSWG 398
+G + + +R+S+
Sbjct: 103 DGKGLLGRPLRISFA 117
>AT1G78260.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:29452210-29454139 FORWARD
Length = 271
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 205 TSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERT 264
T+ +FVG LA + ++ F +F I A ++ D NTG+SKGYGFV F + + T
Sbjct: 14 TTYTKVFVGGLAWETPTDEMRRYF-EQFGEILEAVIITDKNTGKSKGYGFVTFRESDSAT 72
Query: 265 RAMTEMNGV 273
RA+ + N V
Sbjct: 73 RAVADPNPV 81
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 323 GDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV------GKGCGFVQFADRKNA 376
GD+ T +FVGGL + +++R+ F QFG+++ I KG GFV F + +A
Sbjct: 12 GDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSA 71
Query: 377 EEAIHALNGTVIGKQ 391
A+ N + G++
Sbjct: 72 TRAVADPNPVIDGRK 86
>AT1G01080.2 | Symbols: | 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative |
chr1:45503-46789 REVERSE
Length = 294
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 78/165 (47%), Gaps = 14/165 (8%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVI-RNKQTGQSEGYGFVEFYSRATAEKVLQN 174
+++ ++ D + + F G V+S +V+ RN QTG+S G G+V S +A+ + +
Sbjct: 110 LYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGSINSAKIAIAS 169
Query: 175 FNGTMMPNTDQAFRLNWASFSAGERRSEAAT-----------SDLSIFVGDLAIDVTDAM 223
+GT + + R + + G RR+ S ++VG+L
Sbjct: 170 LDGTEVGGREMRVRYS-VDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDG 228
Query: 224 LQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT 268
L+ F S+F +I +V+ D TGR++ + F+ F ER A++
Sbjct: 229 LRNHF-SKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALS 272
>AT3G11400.1 | Symbols: ATEIF3G1, EIF3G1 | EIF3G1 (eukaryotic
translation initiation factor 3G1); RNA binding /
translation initiation factor | chr3:3578542-3580372
FORWARD
Length = 294
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 53/105 (50%), Gaps = 9/105 (8%)
Query: 193 SFSAGERRSEAATSDL-------SIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSN 245
S AG RS A SD+ S+ V +L+ D + L E F F ++ V ID
Sbjct: 192 SMRAGADRS-AVGSDMRRRNDENSVRVTNLSEDTREPDLMELFHP-FGAVTRVYVAIDQK 249
Query: 246 TGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKT 290
TG S+G+GFV F + RA+ ++NG N +RV ATP+ T
Sbjct: 250 TGVSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWATPRPT 294
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 316 AQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSV------KIPVGKGCGFVQ 369
A GS ++ ++ V L D + DL + F FG V V K V +G GFV
Sbjct: 201 AVGSDMRRRNDENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVN 260
Query: 370 FADRKNAEEAIHALNGTVIGKQTVRLSWG 398
F R++A+ AI+ LNG +R+ W
Sbjct: 261 FVSREDAQRAINKLNGYGYDNLILRVEWA 289
>AT2G42890.1 | Symbols: AML2 | AML2; RNA binding |
chr2:17857154-17861282 FORWARD
Length = 843
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 83/195 (42%), Gaps = 37/195 (18%)
Query: 209 SIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT 268
++FV ++ V D+ L F F I+ +S+G+ + + D AM
Sbjct: 199 TLFVRNINSSVEDSELSALF-EPFGEIRSLYTAC-----KSRGFVMISYYDIRAAHAAMR 252
Query: 269 EMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNT 328
+ R + + + PK+ + S+ D N
Sbjct: 253 ALQNTLLRKRTLDIHFSIPKE-----------------------------NPSEKDMNQG 283
Query: 329 TIFVGGLDSDISDEDLRQPFLQFGDVVSVK-IPVGKGCGFVQFADRKNAEEAIHALNGTV 387
T+ + +D+ +S+++L Q F +G++ ++ P + F+++ D ++AE A+ ALN +
Sbjct: 284 TLVIFNVDTTVSNDELLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAETALKALNRSE 343
Query: 388 IGKQTVRLSWGRSPG 402
IG + ++L R PG
Sbjct: 344 IGGKCIKLELSR-PG 357
>AT2G42890.3 | Symbols: AML2 | AML2 | chr2:17857709-17861282 FORWARD
Length = 830
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 83/195 (42%), Gaps = 37/195 (18%)
Query: 209 SIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT 268
++FV ++ V D+ L F F I+ +S+G+ + + D AM
Sbjct: 186 TLFVRNINSSVEDSELSALF-EPFGEIRSLYTAC-----KSRGFVMISYYDIRAAHAAMR 239
Query: 269 EMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNT 328
+ R + + + PK+ + S+ D N
Sbjct: 240 ALQNTLLRKRTLDIHFSIPKE-----------------------------NPSEKDMNQG 270
Query: 329 TIFVGGLDSDISDEDLRQPFLQFGDVVSVK-IPVGKGCGFVQFADRKNAEEAIHALNGTV 387
T+ + +D+ +S+++L Q F +G++ ++ P + F+++ D ++AE A+ ALN +
Sbjct: 271 TLVIFNVDTTVSNDELLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAETALKALNRSE 330
Query: 388 IGKQTVRLSWGRSPG 402
IG + ++L R PG
Sbjct: 331 IGGKCIKLELSR-PG 344
>AT2G42890.2 | Symbols: AML2 | AML2; RNA binding |
chr2:17857709-17861282 FORWARD
Length = 830
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 83/195 (42%), Gaps = 37/195 (18%)
Query: 209 SIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT 268
++FV ++ V D+ L F F I+ +S+G+ + + D AM
Sbjct: 186 TLFVRNINSSVEDSELSALF-EPFGEIRSLYTAC-----KSRGFVMISYYDIRAAHAAMR 239
Query: 269 EMNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNT 328
+ R + + + PK+ + S+ D N
Sbjct: 240 ALQNTLLRKRTLDIHFSIPKE-----------------------------NPSEKDMNQG 270
Query: 329 TIFVGGLDSDISDEDLRQPFLQFGDVVSVK-IPVGKGCGFVQFADRKNAEEAIHALNGTV 387
T+ + +D+ +S+++L Q F +G++ ++ P + F+++ D ++AE A+ ALN +
Sbjct: 271 TLVIFNVDTTVSNDELLQLFGAYGEIREIRETPNRRFHRFIEYYDVRDAETALKALNRSE 330
Query: 388 IGKQTVRLSWGRSPG 402
IG + ++L R PG
Sbjct: 331 IGGKCIKLELSR-PG 344
>AT4G39260.4 | Symbols: GR-RBP8, ATGRP8, CCR1 | ATGRP8/GR-RBP8
(COLD, CIRCADIAN RHYTHM, AND RNA BINDING 1, GLYCINE-RICH
PROTEIN 8); RNA binding | chr4:18274160-18274952 REVERSE
Length = 105
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 211 FVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEM 270
FVG LA D LQ TF S+F + +K++ D +GRS+G+GFV F DE A+ EM
Sbjct: 9 FVGGLAWATNDEDLQRTF-SQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEM 67
Query: 271 N 271
N
Sbjct: 68 N 68
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 331 FVGGLDSDISDEDLRQPFLQFGDVVSVKIP------VGKGCGFVQFADRKNAEEAIHALN 384
FVGGL +DEDL++ F QFGDV+ KI +G GFV F D K +AI +N
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
>AT5G51300.3 | Symbols: | splicing factor-related |
chr5:20867107-20869521 REVERSE
Length = 804
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 40/62 (64%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++G L ++++ + N F+ GE+V AKVI+++ TG S+GYGFV++ A +Q
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 176 NG 177
NG
Sbjct: 542 NG 543
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 207 DLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRA 266
+ ++++G L + D L F S F I AKV+ D TG SKGYGFV++ D A
Sbjct: 479 ETNLYIGFLPPMLEDDGLINLFSS-FGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTA 537
Query: 267 MTEMNGVFCSNRPMRVGVA 285
+ MNG R + V +A
Sbjct: 538 VQAMNGYRFEGRTLAVRIA 556
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 306 AGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIP----- 360
A HP G+ S + + T +++G L + D+ L F FG++V K+
Sbjct: 459 ASAHPGLGSTPTKPPSK-EYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVT 517
Query: 361 -VGKGCGFVQFADRKNAEEAIHALNG 385
+ KG GFV++AD + A A+ A+NG
Sbjct: 518 GLSKGYGFVKYADVQMANTAVQAMNG 543
>AT5G51300.2 | Symbols: | splicing factor-related |
chr5:20867107-20869521 REVERSE
Length = 804
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 40/62 (64%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++G L ++++ + N F+ GE+V AKVI+++ TG S+GYGFV++ A +Q
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 176 NG 177
NG
Sbjct: 542 NG 543
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 207 DLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRA 266
+ ++++G L + D L F S F I AKV+ D TG SKGYGFV++ D A
Sbjct: 479 ETNLYIGFLPPMLEDDGLINLFSS-FGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTA 537
Query: 267 MTEMNGVFCSNRPMRVGVA 285
+ MNG R + V +A
Sbjct: 538 VQAMNGYRFEGRTLAVRIA 556
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 306 AGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIP----- 360
A HP G+ S + + T +++G L + D+ L F FG++V K+
Sbjct: 459 ASAHPGLGSTPTKPPSK-EYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVT 517
Query: 361 -VGKGCGFVQFADRKNAEEAIHALNG 385
+ KG GFV++AD + A A+ A+NG
Sbjct: 518 GLSKGYGFVKYADVQMANTAVQAMNG 543
>AT5G51300.1 | Symbols: | splicing factor-related |
chr5:20867107-20869521 REVERSE
Length = 804
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 40/62 (64%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++G L ++++ + N F+ GE+V AKVI+++ TG S+GYGFV++ A +Q
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 176 NG 177
NG
Sbjct: 542 NG 543
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 207 DLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRA 266
+ ++++G L + D L F S F I AKV+ D TG SKGYGFV++ D A
Sbjct: 479 ETNLYIGFLPPMLEDDGLINLFSS-FGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTA 537
Query: 267 MTEMNGVFCSNRPMRVGVA 285
+ MNG R + V +A
Sbjct: 538 VQAMNGYRFEGRTLAVRIA 556
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 306 AGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIP----- 360
A HP G+ S + + T +++G L + D+ L F FG++V K+
Sbjct: 459 ASAHPGLGSTPTKPPSK-EYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVT 517
Query: 361 -VGKGCGFVQFADRKNAEEAIHALNG 385
+ KG GFV++AD + A A+ A+NG
Sbjct: 518 GLSKGYGFVKYADVQMANTAVQAMNG 543
>AT1G74230.1 | Symbols: GR-RBP5 | GR-RBP5 (glycine-rich RNA-binding
protein 5); RNA binding | chr1:27919007-27920518 FORWARD
Length = 289
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
IFVG ++ + L+E F S++ + AK+++D TGRS+G+ FV F E + AM +
Sbjct: 36 IFVGGISYSTDEFGLREAF-SKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM-Q 93
Query: 270 MNGVFCSNRPMRVGVAT 286
++G R +RV AT
Sbjct: 94 LDGQDLHGRRIRVNYAT 110
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQ 173
I++G + + DE + F+ GEVV AK+I +++TG+S G+ FV F S A +Q
Sbjct: 36 IFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ 93
>AT1G76460.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:28691826-28693400 REVERSE
Length = 285
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 205 TSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERT 264
T+ +FVG LA + L++ F ++ I A V+ D NTGRSKGYGFV F D
Sbjct: 21 TTFTKVFVGGLAWETQSETLRQHF-EQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAAR 79
Query: 265 RAMTEMNGVFCSNR 278
RA + + R
Sbjct: 80 RACADPTPIIDGRR 93
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 323 GDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV------GKGCGFVQFADRKNA 376
GD+ T +FVGGL + E LRQ F Q+G+++ + KG GFV F D + A
Sbjct: 19 GDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAA 78
Query: 377 EEA 379
A
Sbjct: 79 RRA 81
>AT5G41690.1 | Symbols: | RNA binding | chr5:16687354-16691417
REVERSE
Length = 567
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 98/243 (40%), Gaps = 29/243 (11%)
Query: 176 NGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSI 235
N ++ +DQA N S EAA + ++FV +L + + + F + +
Sbjct: 45 NDLLVTKSDQA---NLISVK------EAAVREKTLFVANLPYETKIPNIIDFF-KKVGEV 94
Query: 236 KGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGXXX 295
+++++ G+ G GFV F NE A+ + NG N + + VA K TY
Sbjct: 95 VRVQLIVNLK-GKLVGCGFVEFASVNEAEEALQKKNGECLDNNKIFLDVANKKATYLPPK 153
Query: 296 XXXXXXA----VVLAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQF 351
HP + + +S +FV L D+ F
Sbjct: 154 YCIDHKVWDKDYRRLESHP-----IEEDERPPNSVEEVLFVANLSPQTKISDIFDFFNCV 208
Query: 352 GDVVSVKIPV---GK--GCGFVQFADRKNAEEAIHALNGTVIGKQTVRLSWGRS----PG 402
G+VVS+++ V GK G GFV+FA ++A+ NG + + + ++ PG
Sbjct: 209 GEVVSIRLMVNHEGKHVGYGFVEFASADETKKALENKNGEYLHDHKIFIDVAKTAPYPPG 268
Query: 403 NKH 405
K+
Sbjct: 269 PKY 271
>AT1G55310.2 | Symbols: ATSCL33, SCL33, SR33 | SR33 (SC35-like
splicing factor 33); RNA binding |
chr1:20634343-20636240 FORWARD
Length = 222
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 328 TTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV------GKGCGFVQFADRKNAEEAIH 381
T++ V L D EDLR+ F QFG V + +P +G GFVQF D +A +A H
Sbjct: 36 TSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKH 95
Query: 382 ALNGTVI 388
++G ++
Sbjct: 96 HMDGYLL 102
>AT1G22330.1 | Symbols: | RNA binding | chr1:7886682-7889230
FORWARD
Length = 291
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 205 TSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERT 264
T+ +FVG LA + ++ F +F I A ++ D TG+SKGYGFV F D + T
Sbjct: 14 TTHTKVFVGGLAWETPTDEMRRYF-DQFGEILEAVIITDKATGKSKGYGFVTFRDSDSAT 72
Query: 265 RAMTEMNGVF 274
RA+ + N V
Sbjct: 73 RAVADPNPVI 82
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 323 GDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV------GKGCGFVQFADRKNA 376
GD+ +T +FVGGL + +++R+ F QFG+++ I KG GFV F D +A
Sbjct: 12 GDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSA 71
Query: 377 EEAIHALNGTVIGKQ 391
A+ N + G++
Sbjct: 72 TRAVADPNPVIDGRK 86
>AT1G55310.1 | Symbols: ATSCL33, SCL33, SR33 | SR33 (SC35-like
splicing factor 33); RNA binding |
chr1:20634343-20636161 FORWARD
Length = 220
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 328 TTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV------GKGCGFVQFADRKNAEEAIH 381
T++ V L D EDLR+ F QFG V + +P +G GFVQF D +A +A H
Sbjct: 36 TSLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKH 95
Query: 382 ALNGTVI 388
++G ++
Sbjct: 96 HMDGYLL 102
>AT1G60900.1 | Symbols: | U2 snRNP auxiliary factor large subunit,
putative | chr1:22427673-22431471 FORWARD
Length = 589
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 90/220 (40%), Gaps = 30/220 (13%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
IFVG L T+ ++E S F ++G +V D TG SKGY F + D + A
Sbjct: 377 IFVGGLPYYFTEVQIRELLES-FGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAA 435
Query: 270 MNGVFCSNRPMRV-----GVATPKKTYGXXXXXXXXXAVV-----LAGGHPSNGAVAQGS 319
+NG+ ++ + V G PK + GG P+
Sbjct: 436 LNGIKMGDKTLTVRRAIQGAIQPKPEQEEVLLYAQQQIALQRLMFQPGGTPTKIVCLTQV 495
Query: 320 QSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIP---------VGKGCGFVQF 370
+ D + + + ED+RQ +FG++V+V IP G G F+++
Sbjct: 496 VTADDLRDDEEYAEIM------EDMRQEGGKFGNLVNVVIPRPNPDHDPTPGVGKVFLEY 549
Query: 371 ADRKNAEEAIHALNGTVI-GKQTVRLSWGRSPGNKHWRSD 409
AD + +A +NG G Q V + + P +K+ + D
Sbjct: 550 ADVDGSSKARSGMNGRKFGGNQVVAVYY---PEDKYAQGD 586
>AT1G20880.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:7262868-7264823 REVERSE
Length = 274
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 205 TSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERT 264
T+ +FVG LA + L+ F ++ I A V+ D NTGRSKGYGFV F D
Sbjct: 21 TTFTKVFVGGLAWETQSETLRRHF-DQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAAR 79
Query: 265 RAMTEMNGVFCSNR 278
RA + + R
Sbjct: 80 RACVDPTPIIDGRR 93
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 323 GDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV------GKGCGFVQFADRKNA 376
GD+ T +FVGGL + E LR+ F Q+GD++ + KG GFV F D + A
Sbjct: 19 GDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAA 78
Query: 377 EEA 379
A
Sbjct: 79 RRA 81
>AT3G26420.1 | Symbols: ATRZ-1A | ATRZ-1A; RNA binding / nucleotide
binding | chr3:9673190-9674292 FORWARD
Length = 245
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
F+G LA +D L++ F ++ + AKVV+D +GRS+G+GF+ F ++ A+
Sbjct: 9 CFIGGLAWTTSDRGLRDAF-EKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAA 67
Query: 270 MNGVFCSNRPMRVGVATP 287
MNG+ R + V A P
Sbjct: 68 MNGMDLDGRTITVDKAQP 85
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 330 IFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVGK------GCGFVQFADRKNAEEAIHAL 383
F+GGL SD LR F ++G +V K+ + K G GF+ F ++K +EAI A+
Sbjct: 9 CFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAM 68
Query: 384 NGTVIGKQTV 393
NG + +T+
Sbjct: 69 NGMDLDGRTI 78
>AT1G03457.1 | Symbols: | RNA-binding protein, putative |
chr1:861109-864019 REVERSE
Length = 429
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 73/163 (44%), Gaps = 10/163 (6%)
Query: 111 DEIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEK 170
+E +++G + M E + F V +I+ K T G F+ +R A+K
Sbjct: 9 EERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADK 68
Query: 171 VLQNF-NGTMMPNTDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFG 229
V+ +F N +P ++ +A E + +FVG L +V++ +Q F
Sbjct: 69 VINSFHNKKTLPGASSPLQVKYAD-------GELERLEHKLFVGMLPKNVSETEVQSLF- 120
Query: 230 SRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNG 272
S + +IK +++ S SKG F+++ + + AM +NG
Sbjct: 121 SEYGTIKDLQILRGS-LQTSKGCLFLKYESKEQAVAAMEALNG 162
>AT4G19610.1 | Symbols: | RNA binding | chr4:10677492-10681633
FORWARD
Length = 816
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 9/134 (6%)
Query: 134 FAHTGEVVSAKVIRNKQTGQ--SEGYGFVEFYSRATAEKVLQNFNGTMMPNTDQAFRLNW 191
G+++S +I++K+ + S GYGFVEF S TA V ++ GT++ A L +
Sbjct: 625 LVKQGKILSVTIIKHKKNEKYLSSGYGFVEFDSVETATSVYRDLQGTVLDG--HALILRF 682
Query: 192 ASFSAGERRSEAATSD---LSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGR 248
++ + + D + V ++A + T L++ F S F IK ++ N G+
Sbjct: 683 CENKRSDKVGKDSNKDKPCTKLHVKNIAFEATKRELRQLF-SPFGQIKSMRLP-KKNIGQ 740
Query: 249 SKGYGFVRFGDENE 262
GY FV F + E
Sbjct: 741 YAGYAFVEFVTKQE 754
>AT3G18610.1 | Symbols: ATRANGAP1 | ATRANGAP1 (RAN GTPASE-ACTIVATING
PROTEIN 1); nucleic acid binding | chr3:6404276-6407828
REVERSE
Length = 636
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 71/150 (47%), Gaps = 12/150 (8%)
Query: 114 RTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQ 173
+T++ G+L + + + + N F GEVV + + + G +GYG +EF S A+K L+
Sbjct: 384 KTLFAGNLSYQIARSDIENFFKEAGEVVDVR-LSSFDDGSFKGYGHIEFASPEEAQKALE 442
Query: 174 NFNGTMMPNTDQAFRLNWASFSAGER-----RSEAATSDLSIFVGDLAIDVTDAMLQETF 228
NG ++ D RL+ A+ R R + +I+V + + + +++
Sbjct: 443 -MNGKLLLGRD--VRLDLANERGTPRNSNPGRKGEGSQSRTIYVRGFSSSLGEDEIKKEL 499
Query: 229 GSRFSS---IKGAKVVIDSNTGRSKGYGFV 255
S FS + V D TG S+G+ ++
Sbjct: 500 RSHFSKCGEVTRVHVPTDRETGASRGFAYI 529
>AT3G46020.1 | Symbols: | RNA-binding protein, putative |
chr3:16923496-16924235 REVERSE
Length = 102
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
+FV L+ TD L++ F S F IK A+++ DS T R KG+GF+ F E++ +A+
Sbjct: 9 LFVSRLSAYTTDQSLRQLF-SPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKS 67
Query: 270 MNGVFCSNRPMRVGVA 285
++G R + V VA
Sbjct: 68 LDGKIVDGRLIFVEVA 83
>AT2G44710.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:18439977-18443704 FORWARD
Length = 809
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 77/173 (44%), Gaps = 21/173 (12%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
I++G L E + F H GEV ++++N QT +S+G F+ F + A++ ++
Sbjct: 216 IFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKEL 275
Query: 176 NGTMMPNTDQAFRLNWASFSAGERRSEAATSD-LSIFVGDLAIDVTDAMLQETFGSR-FS 233
M+ G++ A+ D ++FVG++ T L+E
Sbjct: 276 KSPMI---------------NGKKCGVTASQDNDTLFVGNICKIWTPEALREKLKHYGVE 320
Query: 234 SIKGAKVVIDS-NTGRSKGYGFVRF---GDENERTRAMTEMNGVFCSNRPMRV 282
++ +V DS N ++GY F+ F D + + + + + +F +P +V
Sbjct: 321 NMDDITLVEDSNNVNMNRGYAFLEFSSRSDAMDAHKRLVKKDVMFGVEKPAKV 373
>AT3G56860.2 | Symbols: UBA2A | UBA2A; AU-rich element binding / RNA
binding | chr3:21061687-21063123 REVERSE
Length = 478
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 12/153 (7%)
Query: 133 CFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVL---QNFNGTMMPNTDQAFR- 188
F GE+ K + +K +G+S+GYGF+ + SR+ A L Q G+ M A +
Sbjct: 159 AFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRMTACQLASKG 218
Query: 189 -------LNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVV 241
+ A+ SA + S + + I+V ++ ++ L F S+F I+ +
Sbjct: 219 PVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQKLLMFF-SKFGEIEEGPLG 277
Query: 242 IDSNTGRSKGYGFVRFGDENERTRAMTEMNGVF 274
+D TGR KG+ + RA+ E + F
Sbjct: 278 LDKYTGRPKGFCLFVYKSSESAKRALEEPHKTF 310
>AT3G56860.1 | Symbols: UBA2A | UBA2A; RNA binding |
chr3:21061687-21063123 REVERSE
Length = 478
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 12/153 (7%)
Query: 133 CFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVL---QNFNGTMMPNTDQAFR- 188
F GE+ K + +K +G+S+GYGF+ + SR+ A L Q G+ M A +
Sbjct: 159 AFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRMTACQLASKG 218
Query: 189 -------LNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVV 241
+ A+ SA + S + + I+V ++ ++ L F S+F I+ +
Sbjct: 219 PVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQKLLMFF-SKFGEIEEGPLG 277
Query: 242 IDSNTGRSKGYGFVRFGDENERTRAMTEMNGVF 274
+D TGR KG+ + RA+ E + F
Sbjct: 278 LDKYTGRPKGFCLFVYKSSESAKRALEEPHKTF 310
>AT3G56860.3 | Symbols: UBA2A | UBA2A; RNA binding |
chr3:21061687-21063123 REVERSE
Length = 478
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 12/153 (7%)
Query: 133 CFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVL---QNFNGTMMPNTDQAFR- 188
F GE+ K + +K +G+S+GYGF+ + SR+ A L Q G+ M A +
Sbjct: 159 AFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGARNALKQPQKKIGSRMTACQLASKG 218
Query: 189 -------LNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVV 241
+ A+ SA + S + + I+V ++ ++ L F S+F I+ +
Sbjct: 219 PVFGGAPIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQKLLMFF-SKFGEIEEGPLG 277
Query: 242 IDSNTGRSKGYGFVRFGDENERTRAMTEMNGVF 274
+D TGR KG+ + RA+ E + F
Sbjct: 278 LDKYTGRPKGFCLFVYKSSESAKRALEEPHKTF 310
>AT1G03457.2 | Symbols: | RNA-binding protein, putative |
chr1:861109-864019 REVERSE
Length = 438
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 74/165 (44%), Gaps = 5/165 (3%)
Query: 111 DEIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEK 170
+E +++G + M E + F V +I+ K T G F+ +R A+K
Sbjct: 9 EERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDADK 68
Query: 171 VLQNF-NGTMMPNTDQAFRLNWA--SFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQET 227
V+ +F N +P ++ +A + + + +FVG L +V++ +Q
Sbjct: 69 VINSFHNKKTLPGASSPLQVKYADGELERLDVLDCSCNPEHKLFVGMLPKNVSETEVQSL 128
Query: 228 FGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNG 272
F S + +IK +++ S SKG F+++ + + AM +NG
Sbjct: 129 F-SEYGTIKDLQILRGS-LQTSKGCLFLKYESKEQAVAAMEALNG 171
>AT2G37510.1 | Symbols: | RNA-binding protein, putative |
chr2:15750190-15751582 REVERSE
Length = 142
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 199 RRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFG 258
RR TS +FV L+ T+ LQ+ F S F + A+V+ D ++GRSKG+GFV +
Sbjct: 26 RRCSTLTSP-RLFVSGLSRLTTNEKLQDAFAS-FGQLVDARVITDRDSGRSKGFGFVTYA 83
Query: 259 DENERTRAMTEMNGVF 274
+ +A EMN F
Sbjct: 84 TIEDAEKAKAEMNAKF 99
>AT1G13690.1 | Symbols: ATE1 | ATE1 (ATPase E1); nucleic acid
binding | chr1:4693377-4694176 FORWARD
Length = 177
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 209 SIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT 268
+++VG LA +V +++L F F IK K +D + + +GFV F + + + AM
Sbjct: 14 TLYVGGLADEVNESILHAAFIP-FGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMD 72
Query: 269 EMNGVFCSNRPMRVGVATPKKTYG 292
M+G R + V A P+K G
Sbjct: 73 NMDGAELYGRVLTVNYALPEKIKG 96
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Query: 329 TIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVG------KGCGFVQFADRKNAEEAIHA 382
T++VGGL ++++ L F+ FGD+ VK P+ + GFV F +R++A A+
Sbjct: 14 TLYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDN 73
Query: 383 LNGTVI 388
++G +
Sbjct: 74 MDGAEL 79
>AT3G52660.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:19533576-19535713 FORWARD
Length = 471
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/273 (19%), Positives = 109/273 (39%), Gaps = 48/273 (17%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
++LG + E + GEV +++R K +G +GY FV F S+ A + +
Sbjct: 94 VYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTL 153
Query: 176 NGTMMPNTD-QAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSS 234
N NTD + R+ ++ A R +F+G++ + ++ +++
Sbjct: 154 N-----NTDFRGKRIKCSTTQAKHR----------LFLGNVPRNWMESDIKKAANRIGPG 198
Query: 235 IKGAKVVIDS-NTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGX 293
++ ++ + N GR++G+ F+ + + A E + SN ++ P ++
Sbjct: 199 VQIVELPKEPQNMGRNRGFAFIEYYNH-----ACAEYSKQKMSNPSFKLDDNAPTVSWAE 253
Query: 294 XXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGD 353
+ + G S +++ L DI+ E L+ F G
Sbjct: 254 --------------------SRSGGGGDSSASQVKALYIKNLPRDITQERLKALFEHHGK 293
Query: 354 VVSVKIPVGKG------CGFVQFADRKNAEEAI 380
++ V IP K GFV +A+R + A+
Sbjct: 294 ILKVVIPPAKPGKEDSRYGFVHYAERTSVMRAL 326
>AT3G52660.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:19533576-19535713 FORWARD
Length = 471
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/273 (19%), Positives = 109/273 (39%), Gaps = 48/273 (17%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
++LG + E + GEV +++R K +G +GY FV F S+ A + +
Sbjct: 94 VYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTL 153
Query: 176 NGTMMPNTD-QAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSS 234
N NTD + R+ ++ A R +F+G++ + ++ +++
Sbjct: 154 N-----NTDFRGKRIKCSTTQAKHR----------LFLGNVPRNWMESDIKKAANRIGPG 198
Query: 235 IKGAKVVIDS-NTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKKTYGX 293
++ ++ + N GR++G+ F+ + + A E + SN ++ P ++
Sbjct: 199 VQIVELPKEPQNMGRNRGFAFIEYYNH-----ACAEYSKQKMSNPSFKLDDNAPTVSWAE 253
Query: 294 XXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGD 353
+ + G S +++ L DI+ E L+ F G
Sbjct: 254 --------------------SRSGGGGDSSASQVKALYIKNLPRDITQERLKALFEHHGK 293
Query: 354 VVSVKIPVGKG------CGFVQFADRKNAEEAI 380
++ V IP K GFV +A+R + A+
Sbjct: 294 ILKVVIPPAKPGKEDSRYGFVHYAERTSVMRAL 326
>AT1G02840.3 | Symbols: ATSRP34, SRP34, SR1 | SR1 (splicing factor
2); RNA binding | chr1:626918-629583 FORWARD
Length = 303
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 326 NNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKI---PVGKGCGFVQFADRKNAEEAIHA 382
++ T++VG L DI + ++ F ++G VV + + P G FV+F D ++AE+AIH
Sbjct: 5 SSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHG 64
Query: 383 LNG 385
+G
Sbjct: 65 RDG 67
>AT1G02840.1 | Symbols: ATSRP34, SRP34, SR1 | SR1 (splicing factor
2); RNA binding | chr1:626918-629583 FORWARD
Length = 303
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 326 NNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKI---PVGKGCGFVQFADRKNAEEAIHA 382
++ T++VG L DI + ++ F ++G VV + + P G FV+F D ++AE+AIH
Sbjct: 5 SSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHG 64
Query: 383 LNG 385
+G
Sbjct: 65 RDG 67
>AT4G09040.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:5795072-5797312 REVERSE
Length = 304
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%)
Query: 199 RRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFG 258
R + + ++FV +LA + L+E F + ++ +V+ N RS GYGFV F
Sbjct: 180 RETPSPVPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFK 239
Query: 259 DENERTRAMTEMNGVFCSNRPMRVG 283
+ + A+ E G RP+R+
Sbjct: 240 TKKQAEAALIEFQGKDFLGRPIRLA 264
>AT1G02840.2 | Symbols: ATSRP34, SRP34, SR1 | SR1 (splicing factor
2); RNA binding | chr1:626918-628995 FORWARD
Length = 285
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 326 NNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKI---PVGKGCGFVQFADRKNAEEAIHA 382
++ T++VG L DI + ++ F ++G VV + + P G FV+F D ++AE+AIH
Sbjct: 5 SSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHG 64
Query: 383 LNGTVIGKQTVRL 395
+G +R+
Sbjct: 65 RDGYDFDGHRLRV 77
>AT2G21660.2 | Symbols: GR-RBP7, GRP7, CCR2, ATGRP7 | ATGRP7 (COLD,
CIRCADIAN RHYTHM, AND RNA BINDING 2); RNA binding |
chr2:9272557-9273396 REVERSE
Length = 159
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 211 FVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEM 270
FVG LA D L+ F +++ + +K++ D TGRS+G+GFV F DE A+ M
Sbjct: 11 FVGGLAWATDDRALETAF-AQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGM 69
Query: 271 NGVFCSNRPMRVGVA 285
NG R + V A
Sbjct: 70 NGQDLDGRSITVNEA 84
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%)
Query: 110 GDEIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAE 169
GD ++G L D+ + FA G+V+ +K+I +++TG+S G+GFV F +
Sbjct: 4 GDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMK 63
Query: 170 KVLQNFNG 177
++ NG
Sbjct: 64 DAIEGMNG 71
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 331 FVGGLDSDISDEDLRQPFLQFGDVVSVKIP------VGKGCGFVQFADRKNAEEAIHALN 384
FVGGL D L F Q+GDV+ KI +G GFV F D K ++AI +N
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
Query: 385 G 385
G
Sbjct: 71 G 71
>AT2G21660.1 | Symbols: GR-RBP7, GRP7, CCR2, ATGRP7 | ATGRP7 (COLD,
CIRCADIAN RHYTHM, AND RNA BINDING 2); RNA binding /
double-stranded DNA binding / single-stranded DNA
binding | chr2:9272557-9273396 REVERSE
Length = 176
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 211 FVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEM 270
FVG LA D L+ F +++ + +K++ D TGRS+G+GFV F DE A+ M
Sbjct: 11 FVGGLAWATDDRALETAF-AQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGM 69
Query: 271 NGVFCSNRPMRVGVA 285
NG R + V A
Sbjct: 70 NGQDLDGRSITVNEA 84
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%)
Query: 110 GDEIRTIWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAE 169
GD ++G L D+ + FA G+V+ +K+I +++TG+S G+GFV F +
Sbjct: 4 GDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMK 63
Query: 170 KVLQNFNG 177
++ NG
Sbjct: 64 DAIEGMNG 71
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 331 FVGGLDSDISDEDLRQPFLQFGDVVSVKIP------VGKGCGFVQFADRKNAEEAIHALN 384
FVGGL D L F Q+GDV+ KI +G GFV F D K ++AI +N
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
Query: 385 G 385
G
Sbjct: 71 G 71
>AT4G09040.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:5795072-5797190 REVERSE
Length = 244
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%)
Query: 199 RRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFG 258
R + + ++FV +LA + L+E F + ++ +V+ N RS GYGFV F
Sbjct: 120 RETPSPVPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFK 179
Query: 259 DENERTRAMTEMNGVFCSNRPMRVG 283
+ + A+ E G RP+R+
Sbjct: 180 TKKQAEAALIEFQGKDFLGRPIRLA 204
>AT4G36960.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:17427345-17429584 FORWARD
Length = 379
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/290 (22%), Positives = 111/290 (38%), Gaps = 55/290 (18%)
Query: 125 MDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVL--QNFNGTMMPN 182
+D + + + + G++ V++++ TG+S G+G+V F S A+ L ++F G +
Sbjct: 14 IDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKGEHFLGNRI-- 71
Query: 183 TDQAFRLNWASFSAGERRSEAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVI 242
L + E + A IFV + V+++ + F R+ I +
Sbjct: 72 ------LEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHF-ERYGEITDLYMPK 124
Query: 243 DSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPMRVGVATPKK------------- 289
D N+ + +G GF+ F + M + + + + + V ATPK+
Sbjct: 125 DYNSKQHRGIGFITFSSADSVEDLMEDTHDLGGTT--VAVDRATPKEDDHPPRPPPVARM 182
Query: 290 ------------------TYGXXXXXXXXXAVVLAGGHPSNGAVAQG---SQSDGDSNNT 328
Y A + A N A G + G N
Sbjct: 183 SRPPVAIAGGFGAPGGYGAYDAYISAATRYAALGAPTLYDNPATFYGRGEPTTRGIGNK- 241
Query: 329 TIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVG------KGCGFVQFAD 372
IFVG L + S +DLR F +FG + IP +G GFV FA+
Sbjct: 242 -IFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAE 290
>AT1G71800.1 | Symbols: | cleavage stimulation factor, putative |
chr1:27003268-27005512 FORWARD
Length = 461
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
+FVG++ D T+ L+E G + ++V D TG+ KGYGF + DE A
Sbjct: 11 VFVGNIPYDATEEQLREICG-EVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRN 69
Query: 270 MNGVFCSNRPMRVGVA 285
+ + R +RV A
Sbjct: 70 LQSYEINGRQLRVDFA 85
>AT4G18120.2 | Symbols: AML3 | AML3 (ARABIDOPSIS MEI2-LIKE) |
chr4:10038890-10041962 FORWARD
Length = 730
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 314 AVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVK-IPVGKGCGFVQFAD 372
++ + + S+ D N T+ V L +S+ DL F +G++ ++ P + FV+F D
Sbjct: 208 SIPKDNPSEKDVNQGTLVVFNLAPSVSNRDLENIFGVYGEIKEIRETPNKRHHKFVEFFD 267
Query: 373 RKNAEEAIHALNGTVIGKQTVRLSWGRSPG 402
++A+ A+ ALN T I + ++L R PG
Sbjct: 268 VRSADAALKALNRTEIAGKRIKLEHSR-PG 296
>AT4G18120.1 | Symbols: AML3 | AML3 (ARABIDOPSIS MEI2-LIKE); RNA
binding | chr4:10038890-10041962 FORWARD
Length = 730
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 314 AVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVK-IPVGKGCGFVQFAD 372
++ + + S+ D N T+ V L +S+ DL F +G++ ++ P + FV+F D
Sbjct: 208 SIPKDNPSEKDVNQGTLVVFNLAPSVSNRDLENIFGVYGEIKEIRETPNKRHHKFVEFFD 267
Query: 373 RKNAEEAIHALNGTVIGKQTVRLSWGRSPG 402
++A+ A+ ALN T I + ++L R PG
Sbjct: 268 VRSADAALKALNRTEIAGKRIKLEHSR-PG 296
>AT5G06000.1 | Symbols: ATEIF3G2, EIF3G2 | EIF3G2 (eukaryotic
translation initiation factor 3G2); RNA binding /
translation initiation factor | chr5:1808170-1809743
FORWARD
Length = 308
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 209 SIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT 268
S+ V +L+ D L E F F ++ V ID T S+G+GFV F + RA+
Sbjct: 207 SVRVTNLSEDTRGPDLMELFRP-FGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAIN 265
Query: 269 EMNGVFCSNRPMRVGVATPK 288
++NG N +RV +TPK
Sbjct: 266 KLNGYGYDNLILRVEWSTPK 285
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 316 AQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDV------VSVKIPVGKGCGFVQ 369
A GS + ++ V L D DL + F FG V + K + +G GFV
Sbjct: 194 AGGSDMRSRHDENSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVS 253
Query: 370 FADRKNAEEAIHALNGTVIGKQTVRLSW 397
F R++A+ AI+ LNG +R+ W
Sbjct: 254 FVSREDAQRAINKLNGYGYDNLILRVEW 281
>AT1G33470.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:12144612-12146020 FORWARD
Length = 245
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 205 TSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERT 264
T+ +FVG LA + L+ F +F I A V+ D ++GRSKGYGFV F D
Sbjct: 4 TTFTKVFVGGLAWETHKVSLRNYF-EQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62
Query: 265 RAMTE 269
+A +
Sbjct: 63 KACVD 67
>AT1G33470.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:12144612-12146020 FORWARD
Length = 244
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 205 TSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERT 264
T+ +FVG LA + L+ F +F I A V+ D ++GRSKGYGFV F D
Sbjct: 4 TTFTKVFVGGLAWETHKVSLRNYF-EQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62
Query: 265 RAMTE 269
+A +
Sbjct: 63 KACVD 67
>AT3G26120.1 | Symbols: TEL1 | TEL1 (TERMINAL EAR1-LIKE 1); RNA
binding | chr3:9547635-9550423 FORWARD
Length = 615
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 314 AVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVK-IPVGKGCGFVQFAD 372
V S G N T+ + LD ++S LRQ F +G + ++ P K FV+F D
Sbjct: 199 VVPATSAVPGGCNQGTLVIFNLDPEVSSITLRQIFQVYGPIKELRETPYKKHQRFVEFYD 258
Query: 373 RKNAEEAIHALNGTVIGKQTVRLSWGRSPGNK 404
++A A +NG IG + V + + R G K
Sbjct: 259 VRDAARAFDRMNGKEIGGKQVVIEFSRPGGIK 290
>AT3G27700.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:10258918-10262567 REVERSE
Length = 908
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 329 TIFVGGLDSDISDEDL-RQPFLQFGDVVSVKIPVGKGCGFVQFADRKNAEEAIHALNGTV 387
T+FV + + + DL F +FG V+ + IPV FVQF+ R+ AE A+ A + V
Sbjct: 439 TLFVNYVPHESNRRDLILAHFQKFGKVIDIHIPVNSERAFVQFSKREEAESALRAPDA-V 497
Query: 388 IGKQTVRLSWG 398
+G + ++L W
Sbjct: 498 MGNRFIKLWWA 508
>AT3G27700.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:10258918-10262567 REVERSE
Length = 908
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 329 TIFVGGLDSDISDEDL-RQPFLQFGDVVSVKIPVGKGCGFVQFADRKNAEEAIHALNGTV 387
T+FV + + + DL F +FG V+ + IPV FVQF+ R+ AE A+ A + V
Sbjct: 439 TLFVNYVPHESNRRDLILAHFQKFGKVIDIHIPVNSERAFVQFSKREEAESALRAPDA-V 497
Query: 388 IGKQTVRLSWG 398
+G + ++L W
Sbjct: 498 MGNRFIKLWWA 508
>AT5G47320.1 | Symbols: RPS19 | RPS19 (40S ribosomal protein S19);
RNA binding | chr5:19221028-19222178 FORWARD
Length = 212
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
+++G L+ + L++ F S F+ + A+V+ + TGRS+GYGFV F E+ A++
Sbjct: 33 LYIGGLSPGTDEHSLKDAFSS-FNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91
Query: 270 MNG 272
MNG
Sbjct: 92 MNG 94
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++G L DE+ + + F+ V A+V+ NK TG+S GYGFV F S +A +
Sbjct: 33 LYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAM 92
Query: 176 NG 177
NG
Sbjct: 93 NG 94
>AT1G29400.2 | Symbols: AML5 | AML5 (ARABIDOPSIS MEI2-LIKE PROTEIN
5); RNA binding | chr1:10290379-10293682 REVERSE
Length = 800
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 314 AVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVK-IPVGKGCGFVQFAD 372
++ + + S+ D N T+ V LD IS++DL F G++ ++ P + FV+F D
Sbjct: 239 SIPKDNPSEKDMNQGTLVVFNLDPSISNDDLHGIFGAHGEIKEIRETPHKRHHKFVEFYD 298
Query: 373 RKNAEEAIHALNGTVIGKQTVRLSWGRSPG 402
+ AE A+ ALN I + +++ R PG
Sbjct: 299 VRGAEAALKALNRCEIAGKRIKVEPSR-PG 327
>AT1G29400.1 | Symbols: AML5 | AML5 (ARABIDOPSIS MEI2-LIKE PROTEIN
5); RNA binding | chr1:10290379-10293682 REVERSE
Length = 800
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 314 AVAQGSQSDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVK-IPVGKGCGFVQFAD 372
++ + + S+ D N T+ V LD IS++DL F G++ ++ P + FV+F D
Sbjct: 239 SIPKDNPSEKDMNQGTLVVFNLDPSISNDDLHGIFGAHGEIKEIRETPHKRHHKFVEFYD 298
Query: 373 RKNAEEAIHALNGTVIGKQTVRLSWGRSPG 402
+ AE A+ ALN I + +++ R PG
Sbjct: 299 VRGAEAALKALNRCEIAGKRIKVEPSR-PG 327
>AT2G46610.1 | Symbols: | arginine/serine-rich splicing factor,
putative | chr2:19143840-19145563 REVERSE
Length = 250
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 330 IFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVGKGCGFVQFADRKNAEEAIHALNGTVI- 388
++VG D D DL + F +FG V V + G FV F D ++AE+AI + T
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVKRVDM--KSGYAFVYFEDERDAEDAIRRTDNTTFG 61
Query: 389 -GKQTVRLSWGR 399
G++ + + W +
Sbjct: 62 YGRRKLSVEWAK 73
>AT4G02430.2 | Symbols: | pre-mRNA splicing factor, putative / SR1
protein, putative | chr4:1069186-1071313 FORWARD
Length = 278
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 326 NNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKI---PVGKGCGFVQFADRKNAEEAIHA 382
++ TI+VG L DI + ++ F ++G VV + + P G FV+F D ++A++AI+
Sbjct: 5 SSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYG 64
Query: 383 LNGTVIGKQTVRL 395
+G +R+
Sbjct: 65 RDGYDFDGHHLRV 77
>AT1G09140.2 | Symbols: ATSRP30, ATSRP30.1, ATSRP30.2 | ATSRP30.1
(ARABIDOPSIS THALIANA SERINE/ARGININE PROTEIN 30.1); RNA
binding | chr1:2943530-2945820 REVERSE
Length = 256
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 327 NTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKI---PVGKGCGFVQFADRKNAEEAIHAL 383
N TI+VG L DI ++ F ++G +V + + P G FV+F D ++A++AI+
Sbjct: 6 NRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGR 65
Query: 384 NG 385
+G
Sbjct: 66 DG 67
>AT1G09140.1 | Symbols: ATSRP30, ATSRP30.1, ATSRP30.2 | ATSRP30.1
(ARABIDOPSIS THALIANA SERINE/ARGININE PROTEIN 30.1); RNA
binding | chr1:2942889-2945820 REVERSE
Length = 268
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 327 NTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKI---PVGKGCGFVQFADRKNAEEAIHAL 383
N TI+VG L DI ++ F ++G +V + + P G FV+F D ++A++AI+
Sbjct: 6 NRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGR 65
Query: 384 NG 385
+G
Sbjct: 66 DG 67
>AT4G02430.1 | Symbols: | pre-mRNA splicing factor, putative / SR1
protein, putative | chr4:1069186-1070543 FORWARD
Length = 178
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 326 NNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKI---PVGKGCGFVQFADRKNAEEAIHA 382
++ TI+VG L DI + ++ F ++G VV + + P G FV+F D ++A++AI+
Sbjct: 5 SSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYG 64
Query: 383 LNG 385
+G
Sbjct: 65 RDG 67
>AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:17362319-17363754 REVERSE
Length = 352
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 45/76 (59%), Gaps = 6/76 (7%)
Query: 326 NNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVGKGCG------FVQFADRKNAEEA 379
N+ ++VGG+ D+++ DL F Q+G++V V + KG G F+ + D+++ A
Sbjct: 34 NSAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILA 93
Query: 380 IHALNGTVIGKQTVRL 395
+ LNG ++ +T+++
Sbjct: 94 VDNLNGALVLGRTIKV 109
>AT3G15010.2 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:5052851-5054065 FORWARD
Length = 404
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 90/231 (38%), Gaps = 46/231 (19%)
Query: 168 AEKVLQNFNGTMMPNTDQAFRLNWASF----SAGERRSEAATSDLS---IFVGDLAIDVT 220
A K+++ F TDQ L + E A SD+S +F+ LA D T
Sbjct: 34 ARKIIERFT------TDQLLDLLQEAIVRHPDVLESVRLTADSDISQRKLFIRGLAADTT 87
Query: 221 DAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPM 280
L+ F S + ++ A V++D TG+SKGYGFV F + A+ E +
Sbjct: 88 TEGLRSLF-SSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEPS--------- 137
Query: 281 RVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDIS 340
KK G ++G GSQ D + I+V + D+
Sbjct: 138 -------KKIDGRVTVTQLA----------ASGNQGTGSQI-ADISMRKIYVANVPFDMP 179
Query: 341 DEDLRQPFLQFGDV----VSVKIPVGKGCGFVQFADRKNAEEAIHALNGTV 387
+ L F+ +GDV + GK GF F K AE A AL V
Sbjct: 180 ADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFV-YKTAEGAQAALADPV 229
>AT3G15010.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:5052851-5054065 FORWARD
Length = 404
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 90/231 (38%), Gaps = 46/231 (19%)
Query: 168 AEKVLQNFNGTMMPNTDQAFRLNWASF----SAGERRSEAATSDLS---IFVGDLAIDVT 220
A K+++ F TDQ L + E A SD+S +F+ LA D T
Sbjct: 34 ARKIIERFT------TDQLLDLLQEAIVRHPDVLESVRLTADSDISQRKLFIRGLAADTT 87
Query: 221 DAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVFCSNRPM 280
L+ F S + ++ A V++D TG+SKGYGFV F + A+ E +
Sbjct: 88 TEGLRSLF-SSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKEPS--------- 137
Query: 281 RVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTTIFVGGLDSDIS 340
KK G ++G GSQ D + I+V + D+
Sbjct: 138 -------KKIDGRVTVTQLA----------ASGNQGTGSQI-ADISMRKIYVANVPFDMP 179
Query: 341 DEDLRQPFLQFGDV----VSVKIPVGKGCGFVQFADRKNAEEAIHALNGTV 387
+ L F+ +GDV + GK GF F K AE A AL V
Sbjct: 180 ADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFV-YKTAEGAQAALADPV 229
>AT4G13860.1 | Symbols: | glycine-rich RNA-binding protein,
putative | chr4:8022597-8023158 FORWARD
Length = 87
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
++VG+L+ TD ML+E F S + ++ A V+ D T RS+G+GFV + +E A++
Sbjct: 5 VYVGNLSPTTTDDMLREAF-SGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 270 MNGVFCSNRPMRV 282
M+G + R + V
Sbjct: 64 MDGKELNGRRVSV 76
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++G+L ++ + F+ G VV A V+R++ T +S G+GFV + S + AE +
Sbjct: 5 VYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGM 64
Query: 176 NG 177
+G
Sbjct: 65 DG 66
>AT5G47620.3 | Symbols: | heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative | chr5:19319774-19321332
REVERSE
Length = 371
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 10/78 (12%)
Query: 321 SDGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV------GKGCGFVQF---- 370
S G SN+ IFVGGL S +++ + ++ F QFG + V + +G GF+ +
Sbjct: 39 SPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEE 98
Query: 371 ADRKNAEEAIHALNGTVI 388
A K ++ H LNG ++
Sbjct: 99 AVDKVLQKTFHELNGKMV 116
>AT4G36690.1 | Symbols: ATU2AF65A | ATU2AF65A; RNA binding |
chr4:17294143-17297613 REVERSE
Length = 573
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 80/204 (39%), Gaps = 28/204 (13%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
IFVG L T++ ++E S F +KG +V D TG SKGY F + D + A
Sbjct: 361 IFVGGLPYYFTESQVRELLES-FGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAA 419
Query: 270 MNGVFCSNRPMRVGVATPKKTYGXXXXXXXXXAVVLAGGHPSNGAVAQGSQSDGDSNNTT 329
+NG+ ++ + V A G V+L H Q + TT
Sbjct: 420 LNGIKMGDKTLTVRRA----NQGTMLQKPEQENVLL---HAQQQIAFQRVMLQPGAVATT 472
Query: 330 IFVGGL---------DSDISD--EDLRQPFLQFGDVVSVKIP---------VGKGCGFVQ 369
+ D + D ED+RQ +FG + +V IP G G F++
Sbjct: 473 VVCLTQVVTEDELRDDEEYGDIMEDMRQEGGKFGALTNVVIPRPSPNGEPVAGLGKVFLK 532
Query: 370 FADRKNAEEAIHALNGTVIGKQTV 393
+AD + A +NG G V
Sbjct: 533 YADTDGSTRARFGMNGRKFGGNEV 556
>AT2G43370.1 | Symbols: | U1 small nuclear ribonucleoprotein 70
kDa, putative | chr2:18020508-18022453 FORWARD
Length = 333
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 209 SIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMT 268
++FVG L+ T+ L+E S++ IK ++V TG S+GYGFV + E E RA
Sbjct: 65 TLFVGRLSHHTTEDTLREVM-SKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYE 123
Query: 269 EMNGVFCSNR 278
+ + R
Sbjct: 124 DAHHSLIDGR 133
>AT3G54770.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:20284841-20286805 REVERSE
Length = 261
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 205 TSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERT 264
T +FVG LA D + + F ++ I A ++ D T RSKGYGFV F D T
Sbjct: 14 TKLTKVFVGGLAWDTHKEAMYDHF-IKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAAT 72
Query: 265 RA 266
RA
Sbjct: 73 RA 74
>AT5G11412.1 | Symbols: | nucleic acid binding / nucleotide binding
| chr5:3640350-3640877 REVERSE
Length = 175
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 315 VAQGSQSDG-DSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVGK------GCGF 367
VAQ ++ D+ T I+VGGL + +E LR F QFGD++ V + + G GF
Sbjct: 38 VAQHYANENVDTRYTKIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGF 97
Query: 368 VQFADRKNAEEAIHALNGTVIGKQ 391
V F D ++A A + G++
Sbjct: 98 VTFRDAESATRACQNPKPVIDGRE 121
>AT5G54580.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:22188558-22189882 FORWARD
Length = 156
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 327 NTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPV------GKGCGFVQFADRKNAEEAI 380
+T +FV GL + E LR F QFG+V K+ KG GFV++A +++ + I
Sbjct: 55 STNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGI 114
Query: 381 HALNGTVI 388
++G +
Sbjct: 115 AGMDGKFL 122
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 204 ATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENER 263
A ++FV L+ T L+ F ++F + AKVV D +G SKG+GFVR+ +
Sbjct: 52 AEPSTNLFVSGLSKRTTSEGLRTAF-AQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDS 110
Query: 264 TRAMTEMNGVFC 275
+ + M+G F
Sbjct: 111 AKGIAGMDGKFL 122
>AT1G51510.1 | Symbols: Y14 | Y14; RNA binding / protein binding |
chr1:19106740-19108421 REVERSE
Length = 202
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 330 IFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVG------KGCGFVQFADRKNAEEAIHAL 383
I V G+ + +ED+ F FG++ ++ + + KG +++ ++ A+ AI A+
Sbjct: 97 ILVSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAM 156
Query: 384 NGTVIGKQTVRLSWGRSPG 402
NG + Q V + W S G
Sbjct: 157 NGAELLTQNVSVDWAFSSG 175
>AT1G13190.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr1:4499630-4501351 FORWARD
Length = 573
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 116 IWLGDLHHWMDENYVHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNF 175
+++G+LH W + + + + G V K + +G+S+GY VEFY A A +
Sbjct: 204 LFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEFYDSAAAAACKEGM 263
Query: 176 NG 177
NG
Sbjct: 264 NG 265
>AT2G27330.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr2:11702428-11703641 REVERSE
Length = 116
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 325 SNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVG------KGCGFVQFADRKNAEE 378
S ++T+FV G+ ++E L Q F Q+G V+ V + + KG +V F+ ++ AE+
Sbjct: 18 SFSSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEK 77
Query: 379 AIHALNGTVIGKQTVRL 395
A+ LN ++ + V L
Sbjct: 78 ALLELNAQLVDGRVVIL 94
>AT1G18630.1 | Symbols: GR-RBP6 | GR-RBP6 (glycine-rich RNA-binding
protein 6); RNA binding | chr1:6415218-6416275 FORWARD
Length = 155
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 210 IFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTE 269
IFVG L+ +L+E FGS F I A VV+D +G S+G+GFV + AM
Sbjct: 38 IFVGGLSPSTDVELLKEAFGS-FGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNAMQA 96
Query: 270 M 270
M
Sbjct: 97 M 97
>AT5G44200.2 | Symbols: ATCBP20, CBP20 | CBP20 (CAP-BINDING PROTEIN
20) | chr5:17819289-17821102 REVERSE
Length = 257
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 202 EAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDEN 261
EA + ++++G+++ T+ L E F SR IK + +D NT G+ FV F
Sbjct: 28 EALRASTTVYIGNVSFYTTEEQLYELF-SRAGEIKKIIMGLDKNTKTPCGFCFVLFYSRE 86
Query: 262 ERTRAMTEMNGVFCSNRPMRV 282
+ A+ ++G +RP+RV
Sbjct: 87 DTEDAVKYISGTILDDRPIRV 107
>AT5G44200.1 | Symbols: ATCBP20, CBP20 | CBP20 (CAP-BINDING PROTEIN
20); RNA binding | chr5:17819289-17821102 REVERSE
Length = 257
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 202 EAATSDLSIFVGDLAIDVTDAMLQETFGSRFSSIKGAKVVIDSNTGRSKGYGFVRFGDEN 261
EA + ++++G+++ T+ L E F SR IK + +D NT G+ FV F
Sbjct: 28 EALRASTTVYIGNVSFYTTEEQLYELF-SRAGEIKKIIMGLDKNTKTPCGFCFVLFYSRE 86
Query: 262 ERTRAMTEMNGVFCSNRPMRV 282
+ A+ ++G +RP+RV
Sbjct: 87 DTEDAVKYISGTILDDRPIRV 107