Miyakogusa Predicted Gene
- chr4.CM0042.1300.nc
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr4.CM0042.1300.nc + phase: 0
(319 letters)
Database: TAIR8_pep
32,825 sequences; 13,166,001 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G21270.2 | Symbols: | ubiquitin fusion degradation UFD1 fami... 432 e-121
AT2G21270.1 | Symbols: | ubiquitin fusion degradation UFD1 fami... 432 e-121
AT2G21270.3 | Symbols: | ubiquitin fusion degradation UFD1 fami... 431 e-121
AT4G38930.2 | Symbols: | ubiquitin fusion degradation UFD1 fami... 412 e-115
AT4G38930.1 | Symbols: | ubiquitin fusion degradation UFD1 fami... 408 e-114
AT2G29070.2 | Symbols: | ubiquitin fusion degradation UFD1 fami... 343 6e-95
AT2G29070.1 | Symbols: | ubiquitin fusion degradation UFD1 fami... 301 5e-82
AT4G15420.1 | Symbols: | PRLI-interacting factor K | chr4:88238... 110 8e-25
>AT2G21270.2 | Symbols: | ubiquitin fusion degradation UFD1 family
protein | chr2:9115207-9117093 FORWARD
Length = 319
Score = 432 bits (1111), Expect = e-121, Method: Compositional matrix adjust.
Identities = 220/323 (68%), Positives = 237/323 (73%), Gaps = 8/323 (2%)
Query: 1 MFFDGYGYHGTSFEQTYRCYPASFIEKPQLESGDKIIMPPSALDRLASLHIDYPMLFELR 60
MFFDGY YHGT+FEQ+YRCYPASFI+KPQLESGDKIIMPPSALDRLASLHIDYPMLFELR
Sbjct: 1 MFFDGYHYHGTTFEQSYRCYPASFIDKPQLESGDKIIMPPSALDRLASLHIDYPMLFELR 60
Query: 61 NDDAERVSHCGVLEFIAEEGMIYMPYWMMENMLLQEGDIVRVKNVTLPKGKYVKLQPHTK 120
N ERV+HCGVLEFIAEEGMIYMPYWMM+N+LLQEGDIVRV+NVTLPKG YVKLQPHT
Sbjct: 61 NAGIERVTHCGVLEFIAEEGMIYMPYWMMQNLLLQEGDIVRVRNVTLPKGTYVKLQPHTT 120
Query: 121 DFLDISNPKAILETTLRNFSCLTTGDSIMVAYNNKKYYIDIIETKPANAISIIETDCEVD 180
DFLDISNPKAILET LRN+SCLT+GDSIMV YNNKKY+IDI+ETKPANAISIIETDCEVD
Sbjct: 121 DFLDISNPKAILETALRNYSCLTSGDSIMVPYNNKKYFIDIVETKPANAISIIETDCEVD 180
Query: 181 FAPPLDYKEPEKPTXXXXXXXXXXXXXXXXXXXXXKFNPFTGAGRRLDGKPLKYEPPPVS 240
FAPPLDYKEPE+PT KFNPFTG+GRRLDG+PL YEP P S
Sbjct: 181 FAPPLDYKEPERPT-APSAAKGPAKAEEVVDEPEPKFNPFTGSGRRLDGRPLAYEPAPAS 239
Query: 241 SSGTKDKKPDVPSVXXXXXXXXXXXXXXXXXXGKLVFGSNPARTKDTGX----XXXXXXX 296
SS K K+P V + GKLVFG+N R
Sbjct: 240 SS--KGKQPVVAN-GNGQSSVASSSEKATRAQGKLVFGANGNRAPKEAAPKVGAAKETKK 296
Query: 297 XXXXXXXXXXFQPFSGKKYSLRG 319
FQ FSGKKYSLRG
Sbjct: 297 EEQEKKDEPKFQAFSGKKYSLRG 319
>AT2G21270.1 | Symbols: | ubiquitin fusion degradation UFD1 family
protein | chr2:9115207-9117093 FORWARD
Length = 319
Score = 432 bits (1111), Expect = e-121, Method: Compositional matrix adjust.
Identities = 220/323 (68%), Positives = 237/323 (73%), Gaps = 8/323 (2%)
Query: 1 MFFDGYGYHGTSFEQTYRCYPASFIEKPQLESGDKIIMPPSALDRLASLHIDYPMLFELR 60
MFFDGY YHGT+FEQ+YRCYPASFI+KPQLESGDKIIMPPSALDRLASLHIDYPMLFELR
Sbjct: 1 MFFDGYHYHGTTFEQSYRCYPASFIDKPQLESGDKIIMPPSALDRLASLHIDYPMLFELR 60
Query: 61 NDDAERVSHCGVLEFIAEEGMIYMPYWMMENMLLQEGDIVRVKNVTLPKGKYVKLQPHTK 120
N ERV+HCGVLEFIAEEGMIYMPYWMM+N+LLQEGDIVRV+NVTLPKG YVKLQPHT
Sbjct: 61 NAGIERVTHCGVLEFIAEEGMIYMPYWMMQNLLLQEGDIVRVRNVTLPKGTYVKLQPHTT 120
Query: 121 DFLDISNPKAILETTLRNFSCLTTGDSIMVAYNNKKYYIDIIETKPANAISIIETDCEVD 180
DFLDISNPKAILET LRN+SCLT+GDSIMV YNNKKY+IDI+ETKPANAISIIETDCEVD
Sbjct: 121 DFLDISNPKAILETALRNYSCLTSGDSIMVPYNNKKYFIDIVETKPANAISIIETDCEVD 180
Query: 181 FAPPLDYKEPEKPTXXXXXXXXXXXXXXXXXXXXXKFNPFTGAGRRLDGKPLKYEPPPVS 240
FAPPLDYKEPE+PT KFNPFTG+GRRLDG+PL YEP P S
Sbjct: 181 FAPPLDYKEPERPT-APSAAKGPAKAEEVVDEPEPKFNPFTGSGRRLDGRPLAYEPAPAS 239
Query: 241 SSGTKDKKPDVPSVXXXXXXXXXXXXXXXXXXGKLVFGSNPARTKDTGX----XXXXXXX 296
SS K K+P V + GKLVFG+N R
Sbjct: 240 SS--KGKQPVVAN-GNGQSSVASSSEKATRAQGKLVFGANGNRAPKEAAPKVGAAKETKK 296
Query: 297 XXXXXXXXXXFQPFSGKKYSLRG 319
FQ FSGKKYSLRG
Sbjct: 297 EEQEKKDEPKFQAFSGKKYSLRG 319
>AT2G21270.3 | Symbols: | ubiquitin fusion degradation UFD1 family
protein | chr2:9114922-9117093 FORWARD
Length = 340
Score = 431 bits (1108), Expect = e-121, Method: Compositional matrix adjust.
Identities = 220/323 (68%), Positives = 237/323 (73%), Gaps = 8/323 (2%)
Query: 1 MFFDGYGYHGTSFEQTYRCYPASFIEKPQLESGDKIIMPPSALDRLASLHIDYPMLFELR 60
MFFDGY YHGT+FEQ+YRCYPASFI+KPQLESGDKIIMPPSALDRLASLHIDYPMLFELR
Sbjct: 22 MFFDGYHYHGTTFEQSYRCYPASFIDKPQLESGDKIIMPPSALDRLASLHIDYPMLFELR 81
Query: 61 NDDAERVSHCGVLEFIAEEGMIYMPYWMMENMLLQEGDIVRVKNVTLPKGKYVKLQPHTK 120
N ERV+HCGVLEFIAEEGMIYMPYWMM+N+LLQEGDIVRV+NVTLPKG YVKLQPHT
Sbjct: 82 NAGIERVTHCGVLEFIAEEGMIYMPYWMMQNLLLQEGDIVRVRNVTLPKGTYVKLQPHTT 141
Query: 121 DFLDISNPKAILETTLRNFSCLTTGDSIMVAYNNKKYYIDIIETKPANAISIIETDCEVD 180
DFLDISNPKAILET LRN+SCLT+GDSIMV YNNKKY+IDI+ETKPANAISIIETDCEVD
Sbjct: 142 DFLDISNPKAILETALRNYSCLTSGDSIMVPYNNKKYFIDIVETKPANAISIIETDCEVD 201
Query: 181 FAPPLDYKEPEKPTXXXXXXXXXXXXXXXXXXXXXKFNPFTGAGRRLDGKPLKYEPPPVS 240
FAPPLDYKEPE+PT KFNPFTG+GRRLDG+PL YEP P S
Sbjct: 202 FAPPLDYKEPERPT-APSAAKGPAKAEEVVDEPEPKFNPFTGSGRRLDGRPLAYEPAPAS 260
Query: 241 SSGTKDKKPDVPSVXXXXXXXXXXXXXXXXXXGKLVFGSNPARTKDTGX----XXXXXXX 296
SS K K+P V + GKLVFG+N R
Sbjct: 261 SS--KGKQPVVAN-GNGQSSVASSSEKATRAQGKLVFGANGNRAPKEAAPKVGAAKETKK 317
Query: 297 XXXXXXXXXXFQPFSGKKYSLRG 319
FQ FSGKKYSLRG
Sbjct: 318 EEQEKKDEPKFQAFSGKKYSLRG 340
>AT4G38930.2 | Symbols: | ubiquitin fusion degradation UFD1 family
protein | chr4:18149901-18151610 FORWARD
Length = 315
Score = 412 bits (1059), Expect = e-115, Method: Compositional matrix adjust.
Identities = 203/321 (63%), Positives = 228/321 (71%), Gaps = 8/321 (2%)
Query: 1 MFFDGYGYHGTSFEQTYRCYPASFIEKPQLESGDKIIMPPSALDRLASLHIDYPMLFELR 60
MF+DGY YHGT+FEQTYRCYP+SFI+KPQ+ESGDKIIMPPSALDRLASL IDYPMLFELR
Sbjct: 1 MFYDGYAYHGTTFEQTYRCYPSSFIDKPQIESGDKIIMPPSALDRLASLQIDYPMLFELR 60
Query: 61 NDDAERVSHCGVLEFIAEEGMIYMPYWMMENMLLQEGDIVRVKNVTLPKGKYVKLQPHTK 120
N + SHCGVLEFIAEEG+IY+PYWMM+N+LLQEGD+VRV+NVTLPKG YVKLQPHT
Sbjct: 61 NASTDSFSHCGVLEFIAEEGVIYIPYWMMQNLLLQEGDMVRVRNVTLPKGTYVKLQPHTT 120
Query: 121 DFLDISNPKAILETTLRNFSCLTTGDSIMVAYNNKKYYIDIIETKPANAISIIETDCEVD 180
DFLDI+NPKAILET LRN+SCLT GDSIMV YNNKKY+IDI+E KP+N ISIIETDCEVD
Sbjct: 121 DFLDIANPKAILETALRNYSCLTVGDSIMVPYNNKKYFIDIVEAKPSNGISIIETDCEVD 180
Query: 181 FAPPLDYKEPEKPTXXXXXXXXXXXXXXXXXXXXXKFNPFTGAGRRLDGKPLKYEPPPVS 240
FAPPLDYKEPE+P KFNPFTG+GRRLDG+PL YEP P +
Sbjct: 181 FAPPLDYKEPERPVAPAPAKGEAKAKEVDVAEAEPKFNPFTGSGRRLDGRPLSYEPQPGA 240
Query: 241 SSGTKDKKPDVPSVXXXXXXXXXXXXXXXXXXGKLVFGSNPART--KDTGXXXXXXXXXX 298
++ P GKLVFGSN R+ + T
Sbjct: 241 ANSNGQSHP------VASSSSSGSEKATQQNRGKLVFGSNVERSTKETTKVGAGKDRKQE 294
Query: 299 XXXXXXXXFQPFSGKKYSLRG 319
FQ FSGKKYSLRG
Sbjct: 295 EEAEKEAKFQAFSGKKYSLRG 315
>AT4G38930.1 | Symbols: | ubiquitin fusion degradation UFD1 family
protein | chr4:18149901-18151610 FORWARD
Length = 311
Score = 408 bits (1048), Expect = e-114, Method: Compositional matrix adjust.
Identities = 203/321 (63%), Positives = 228/321 (71%), Gaps = 12/321 (3%)
Query: 1 MFFDGYGYHGTSFEQTYRCYPASFIEKPQLESGDKIIMPPSALDRLASLHIDYPMLFELR 60
MF+DGY YHGT+FEQTYRCYP+SFI+KPQ+ESGDKIIMPPSALDRLASL IDYPMLFELR
Sbjct: 1 MFYDGYAYHGTTFEQTYRCYPSSFIDKPQIESGDKIIMPPSALDRLASLQIDYPMLFELR 60
Query: 61 NDDAERVSHCGVLEFIAEEGMIYMPYWMMENMLLQEGDIVRVKNVTLPKGKYVKLQPHTK 120
N + SHCGVLEFIAEEG+IY+PYWMM+N+LLQEGD+VRV+NVTLPKG YVKLQPHT
Sbjct: 61 NASTDSFSHCGVLEFIAEEGVIYIPYWMMQNLLLQEGDMVRVRNVTLPKGTYVKLQPHTT 120
Query: 121 DFLDISNPKAILETTLRNFSCLTTGDSIMVAYNNKKYYIDIIETKPANAISIIETDCEVD 180
DFLDI+NPKAILET LRN+SCLT GDSIMV YNNKKY+IDI+E KP+N ISIIETDCEVD
Sbjct: 121 DFLDIANPKAILETALRNYSCLTVGDSIMVPYNNKKYFIDIVEAKPSNGISIIETDCEVD 180
Query: 181 FAPPLDYKEPEKPTXXXXXXXXXXXXXXXXXXXXXKFNPFTGAGRRLDGKPLKYEPPPVS 240
FAPPLDYKEPE+P KFNPFTG+GRRLDG+PL YEP P +
Sbjct: 181 FAPPLDYKEPERPV----APAPAKAKEVDVAEAEPKFNPFTGSGRRLDGRPLSYEPQPGA 236
Query: 241 SSGTKDKKPDVPSVXXXXXXXXXXXXXXXXXXGKLVFGSNPART--KDTGXXXXXXXXXX 298
++ P GKLVFGSN R+ + T
Sbjct: 237 ANSNGQSHP------VASSSSSGSEKATQQNRGKLVFGSNVERSTKETTKVGAGKDRKQE 290
Query: 299 XXXXXXXXFQPFSGKKYSLRG 319
FQ FSGKKYSLRG
Sbjct: 291 EEAEKEAKFQAFSGKKYSLRG 311
>AT2G29070.2 | Symbols: | ubiquitin fusion degradation UFD1 family
protein | chr2:12494874-12496412 FORWARD
Length = 312
Score = 343 bits (881), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 173/315 (54%), Positives = 209/315 (66%), Gaps = 12/315 (3%)
Query: 10 GTSFEQTYRCYPASFIEKPQLESGDKIIMPPSALDRLASLHIDYPMLFELRNDDAERVSH 69
G+SFEQ YRCYP +FI+K LE GDKIIMPPSALDRLASLHI+YPMLF+L N E+ SH
Sbjct: 5 GSSFEQCYRCYPVTFIDKAHLEKGDKIIMPPSALDRLASLHIEYPMLFQLSNVSVEKTSH 64
Query: 70 CGVLEFIAEEGMIYMPYWMMENMLLQEGDIVRVKNVTLPKGKYVKLQPHTKDFLDISNPK 129
CGVLEF A+EG++Y+PYWMM+NM L+EGD+++VKN++L KG Y+KLQPHT+DFLDISNPK
Sbjct: 65 CGVLEFTADEGLVYLPYWMMQNMSLEEGDVMQVKNISLVKGTYIKLQPHTQDFLDISNPK 124
Query: 130 AILETTLRNFSCLTTGDSIMVAYNNKKYYIDIIETKPANAISIIETDCEVDFAPPLDYKE 189
AILETTLR++SCLTTGD+IMV YNNK+YYI+++E KP++A+SIIETDCEVDFAPPLDYKE
Sbjct: 125 AILETTLRSYSCLTTGDTIMVPYNNKQYYINVVEAKPSSAVSIIETDCEVDFAPPLDYKE 184
Query: 190 PEKPTXXXXXXXX--XXXXXXXXXXXXXKFNPFTGAGRRLDGKPLKYEPPPVSSSGTKDK 247
PEKP KF PFTG+G+RLDGK P +D
Sbjct: 185 PEKPQKLTPSNKRPLQVKEEEEPASKVPKFTPFTGSGKRLDGKAQTQTEP-------EDT 237
Query: 248 KPDVPSVXXXXXXXXXXXXXXXXXXGKLVFGSNP-ARTKDTGXXX--XXXXXXXXXXXXX 304
K GKLVFGSN + K+T
Sbjct: 238 KQQEKPTENGKDDEKLSVTTPRQISGKLVFGSNSKSAAKETAKVDDPKNIVQESSTKSDE 297
Query: 305 XXFQPFSGKKYSLRG 319
F+ F+GKKYSL G
Sbjct: 298 AKFKVFTGKKYSLNG 312
>AT2G29070.1 | Symbols: | ubiquitin fusion degradation UFD1 family
protein | chr2:12495138-12496412 FORWARD
Length = 280
Score = 301 bits (770), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 153/287 (53%), Positives = 186/287 (64%), Gaps = 12/287 (4%)
Query: 38 MPPSALDRLASLHIDYPMLFELRNDDAERVSHCGVLEFIAEEGMIYMPYWMMENMLLQEG 97
MPPSALDRLASLHI+YPMLF+L N E+ SHCGVLEF A+EG++Y+PYWMM+NM L+EG
Sbjct: 1 MPPSALDRLASLHIEYPMLFQLSNVSVEKTSHCGVLEFTADEGLVYLPYWMMQNMSLEEG 60
Query: 98 DIVRVKNVTLPKGKYVKLQPHTKDFLDISNPKAILETTLRNFSCLTTGDSIMVAYNNKKY 157
D+++VKN++L KG Y+KLQPHT+DFLDISNPKAILETTLR++SCLTTGD+IMV YNNK+Y
Sbjct: 61 DVMQVKNISLVKGTYIKLQPHTQDFLDISNPKAILETTLRSYSCLTTGDTIMVPYNNKQY 120
Query: 158 YIDIIETKPANAISIIETDCEVDFAPPLDYKEPEKPTXXXXXXXX--XXXXXXXXXXXXX 215
YI+++E KP++A+SIIETDCEVDFAPPLDYKEPEKP
Sbjct: 121 YINVVEAKPSSAVSIIETDCEVDFAPPLDYKEPEKPQKLTPSNKRPLQVKEEEEPASKVP 180
Query: 216 KFNPFTGAGRRLDGKPLKYEPPPVSSSGTKDKKPDVPSVXXXXXXXXXXXXXXXXXXGKL 275
KF PFTG+G+RLDGK P +D K GKL
Sbjct: 181 KFTPFTGSGKRLDGKAQTQTEP-------EDTKQQEKPTENGKDDEKLSVTTPRQISGKL 233
Query: 276 VFGSNP-ARTKDTGXXX--XXXXXXXXXXXXXXXFQPFSGKKYSLRG 319
VFGSN + K+T F+ F+GKKYSL G
Sbjct: 234 VFGSNSKSAAKETAKVDDPKNIVQESSTKSDEAKFKVFTGKKYSLNG 280
>AT4G15420.1 | Symbols: | PRLI-interacting factor K |
chr4:8823822-8825949 FORWARD
Length = 561
Score = 110 bits (276), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 65/163 (39%), Positives = 92/163 (56%), Gaps = 11/163 (6%)
Query: 32 SGDKIIMPPSALDRLASLHI--DYPMLFELR---NDDAERVSHCGVLEFIAEEGMIYMPY 86
+GDKI +PPS L+ P+ FEL + D ++ +H GVLEF AE+G I +P
Sbjct: 90 NGDKIKLPPSCFTELSDQGAFDKGPLYFELSVVDHADNKKTTHSGVLEFTAEDGTIGLPP 149
Query: 87 WMMENMLLQEGD-----IVRVKNVTLPKGKYVKLQPHTKDFLDISNPKAILETTLRNFSC 141
+ N L D +V ++ + LPKG Y KLQP F D+ N KAILET LR +
Sbjct: 150 HVWSN-LFSTHDPMDVPLVEIRYIRLPKGSYAKLQPDNLGFSDLPNHKAILETILRQHAT 208
Query: 142 LTTGDSIMVAYNNKKYYIDIIETKPANAISIIETDCEVDFAPP 184
L+ D ++V Y Y + ++E +PA +IS++ETD EVD P
Sbjct: 209 LSLDDVLLVNYGQVSYKLQVLELRPATSISVLETDIEVDIVSP 251