Miyakogusa Predicted Gene

chr4.CM0007.1100.nc
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr4.CM0007.1100.nc + phase: 0 /partial
         (581 letters)

Database: TAIR8_pep 
           32,825 sequences; 13,166,001 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G20910.1 | Symbols: CRM2, HEN1 | HEN1 (HUA ENHANCER 1) | chr4...   506   e-143
AT4G20920.1 | Symbols:  | double-stranded RNA-binding domain (Ds...   381   e-106

>AT4G20910.1 | Symbols: CRM2, HEN1 | HEN1 (HUA ENHANCER 1) |
           chr4:11186275-11190586 REVERSE
          Length = 942

 Score =  506 bits (1304), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 274/588 (46%), Positives = 374/588 (63%), Gaps = 25/588 (4%)

Query: 4   GKTPEGIYKLSREAILAAELPSRFTTRANWRGSFPRDILLMFCRQHRLSEPLFSVVNPPL 63
           G +P GIYK+SR+A++AA+LP  FTT++NWRG  PR+IL +FC QHRL+EP+ S    P+
Sbjct: 354 GMSPNGIYKISRQAVIAAQLPFAFTTKSNWRGPLPREILGLFCHQHRLAEPILSSSTAPV 413

Query: 64  KVADAGTKATEH-----VNGASGTASPKQSDK----EVFKCEIKLLSRLEDIILLCSPED 114
           K      ++ +      V+ A+   S ++ D       F+CE+K+ ++ +D++L CSP  
Sbjct: 414 KSLSDIFRSHKKLKVSGVDDANENLSRQKEDTPGLGHGFRCEVKIFTKSQDLVLECSPRK 473

Query: 115 CFKKQNDAIQNASLKILSWLNKYFKSMTVSIEGLYETAGNFNIQICSQNLLR--DILAGQ 172
            ++K+NDAIQNASLK L W +K+F  + V  E   +T  + + +  S N+     IL  +
Sbjct: 474 FYEKENDAIQNASLKALLWFSKFFADLDVDGEQSCDTDDDQDTKSSSPNVFAAPPILQKE 533

Query: 173 SIRDCQ-LNAIQCNELLEPICINSSYDMTGNGGCSLKIEGLDSGVYPSNGSLPCISYSVS 231
              + +  N +   + ++ I   S   +  +   ++  E    G  P   +         
Sbjct: 534 HSSESKNTNVLSAEKRVQSITNGSVVSICYSLSLAVDPEYSSDGESPREDNESNEEMESE 593

Query: 232 LVVEGENMKEVIEGCNEFEFEMGVGAVIPSVEEVVMQMSVGQCAYF--TTNLVTSDLIFA 289
                E+  E+IE   E EFE+G G++ P +E  V QM+VG+ A F  T       LI A
Sbjct: 594 YSANCESSVELIESNEEIEFEVGTGSMNPHIESEVTQMTVGEYASFRMTPPDAAEALILA 653

Query: 290 SVGDSVKMLSLLSSKTFCVEYEISLTKVAEPPEERMEQALFSPPLSKQRVEFAVQQIVES 349
              D+V++ SLLS +  C+ Y I L  V  P EERME A F PPLSKQRVE+A++ I ES
Sbjct: 654 VGSDTVRIRSLLSERP-CLNYNILLLGVKGPSEERMEAAFFKPPLSKQRVEYALKHIRES 712

Query: 350 RATSLVDFGCGSGSLLEALLNYTISLEKIVGVDISQKGLARAAKVLNSKLVTNAGVQQTN 409
            A++LVDFGCGSGSLL++LL+Y  SL+ I+GVDIS KGLARAAK+L+ KL   A     N
Sbjct: 713 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEA----CN 768

Query: 410 IQSITFYEGSITSFDSRLHGFDIGTCLEVIEHMDEDQACLFGDVALSCFCPRILIVSTPN 469
           ++S T Y+GSI  FDSRLH  DIGTCLEVIEHM+EDQAC FG+  LS F P++LIVSTPN
Sbjct: 769 VKSATLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPKLLIVSTPN 828

Query: 470 FEYNVVLQKSNPSTQDEEDSDEKTLLQSCKFRNHDHKFEWTREQFEQWASDLAARHNYSV 529
           +E+N +LQ+S P TQ+E +S+     Q  KFRNHDHKFEWTREQF QWAS L  RHNYSV
Sbjct: 829 YEFNTILQRSTPETQEENNSEP----QLPKFRNHDHKFEWTREQFNQWASKLGKRHNYSV 884

Query: 530 EFSGVGGSADVEPGFASQIAVFKRDWKLEDDILKQADTERHYNVIWEW 577
           EFSGVGGS +VEPGFASQIA+F+R+    +++ +   + + Y VIWEW
Sbjct: 885 EFSGVGGSGEVEPGFASQIAIFRREASSVENVAES--SMQPYKVIWEW 930


>AT4G20920.1 | Symbols:  | double-stranded RNA-binding domain
           (DsRBD)-containing protein | chr4:11193608-11197588
           REVERSE
          Length = 870

 Score =  381 bits (978), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 237/606 (39%), Positives = 322/606 (53%), Gaps = 106/606 (17%)

Query: 4   GKTPEGIYKLSREAILAAELPSRFTTRANWRGSFPRDILLMFCRQHRLSEPLFSVVNPPL 63
           G +P GIYKLSREAI+AA+LP  FTT++ WRG FPR+IL MFCRQ +L EP+F++   P+
Sbjct: 332 GISPNGIYKLSREAIIAAQLPFSFTTKSTWRGPFPREILCMFCRQQQLVEPIFTISTAPV 391

Query: 64  KVADAGTKATEHVNGASGTASPKQSDKE------------------------VFKCEIKL 99
           K      ++ + +  +       + D++                         ++CE+K+
Sbjct: 392 KPMSCILRSYQKLKDSECDEKDSECDEKDSECDDSEYQYTSKGKEEIPESGTGYRCEVKI 451

Query: 100 LSRLEDIILLCSPEDCFKKQNDAIQNASLKILSWLNKYFKSMTVSIEGLYETAGNFNIQI 159
           LS+ +D++L CS    ++K+N AIQNASL  LSWL++           L++      +QI
Sbjct: 452 LSKSQDLVLDCSSRKFYEKENHAIQNASLNALSWLSR-----------LFDEGDGDPLQI 500

Query: 160 CSQNLLRDILAGQSIRDCQLNAIQCNELLEPICINSSYDMTGNGGCSLKIEGLDSGVYPS 219
           C  +   D +  Q I      A+          +N   D        ++I+ +      +
Sbjct: 501 CYTDDHLDAVFQQRI--LMKEAVPKGHFRNRDEMNQYEDQ-------VRIQTI------T 545

Query: 220 NGSLPCISYSVSLVVE------GENMKEVIEGCNEFEFEMGVGAVIPSVEEVVMQMSVGQ 273
            GSL  I YSV L V+      G++ KE+IE   E EFE+G G++ P +E VV Q+ VGQ
Sbjct: 546 KGSLVSICYSVYLDVDADFSKDGKSKKELIESNEEIEFEVGNGSMNPHLEAVVTQLVVGQ 605

Query: 274 CAYFTTNLVTSDLIFASVGDSVKMLSLLSSKTFCVEYEISLTKVAEPPEERMEQALFSPP 333
            A F TN    DL   +   + +  SLLS      EY + L  V  P E+R+E   F P 
Sbjct: 606 YARFLTNAPAEDLFVTAATGTQRDRSLLSD-VAGFEYCVRLLGVKGPTEKRIEADFFKPS 664

Query: 334 LSKQRVEFAVQQIVESRATSLVDFGCGSGSLLEALLNYTISLEKIVGVDISQKGLARAAK 393
           LSKQR+E+ V+ I ES A++LVDFGCGSGSLL ++L+   SL+ I GVDIS K L RAAK
Sbjct: 665 LSKQRLEYVVKHIKESSASTLVDFGCGSGSLLASILDCPTSLQTIAGVDISHKSLTRAAK 724

Query: 394 VLNSKLVTNAGVQQTNIQSITFYEGSITSFDSRLHGFDIGTCLEVIEHMDEDQACLFGDV 453
           V                                            IEHM+EDQA  FG  
Sbjct: 725 V--------------------------------------------IEHMEEDQASQFGKT 740

Query: 454 ALSCFCPRILIVSTPNFEYNVVLQKSNPSTQDEEDSDEKTLLQSCKFRNHDHKFEWTREQ 513
            LS F P++LIVSTPN EYN    KS P    +  S    L    KFRN DHKFEWTR+Q
Sbjct: 741 VLSLFRPKLLIVSTPNIEYNTNFHKSGPPNHPKNRSMSSQLP---KFRNQDHKFEWTRKQ 797

Query: 514 FEQWASDLAARHNYSVEFSGVGGSADVEPGFASQIAVFKRDWKLEDDILKQAD-TERHYN 572
           F+QWAS LA RHNYSV FSGVGGS   +PGFASQI VF+R   L + + K ++ + + Y 
Sbjct: 798 FKQWASKLAKRHNYSVYFSGVGGSGKGDPGFASQIVVFRR-ISLSNIVEKVSEGSMQPYK 856

Query: 573 VIWEWN 578
           +IW+W+
Sbjct: 857 IIWKWS 862