Miyakogusa Predicted Gene

chr4.CM0006.350.nc
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr4.CM0006.350.nc - phase: 0 
         (1230 letters)

Database: TAIR8_pep 
           32,825 sequences; 13,166,001 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G34357.1 | Symbols:  | binding | chr2:14506315-14512634 FORWARD   1145   0.0  
AT4G23540.1 | Symbols:  | binding | chr4:12280557-12284693 REVERSE    211   3e-54

>AT2G34357.1 | Symbols:  | binding | chr2:14506315-14512634 FORWARD
          Length = 1280

 Score = 1145 bits (2962), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 608/1239 (49%), Positives = 804/1239 (64%), Gaps = 55/1239 (4%)

Query: 14   DDFCNSILSRFGNSTAENHQHLCATVGVISQELKERNMPSSPVAYFGATCSSLRS-FASE 72
            +DF   + SR   S   +H+HLCA +  +S+ L E N   +PVAYF  TC SL S F++ 
Sbjct: 25   EDFGEYMRSRLSQSKRPDHEHLCAVIEELSKTLAEDNHRRTPVAYFACTCRSLDSLFSAH 84

Query: 73   PNPHNHSIDALLTILSLLIAGVPVPVLKTQREFLSNFIVRVLQS-PSVSESGAVSGIKCL 131
              P    +   + ILSL+   V   VLK  R+ L+  +V  +    S +    +SG+KCL
Sbjct: 85   AEPPVDVVQPHIVILSLVFPKVSAGVLK--RDGLALRLVLNVLRLKSATPECLISGLKCL 142

Query: 132  SHLLISRDTVDWSDVSPLFNVLLVFLTDSRPKVRRQSHLCLRDVLLNFQSSSLLASASEG 191
             HLL + +++  ++ S  +N+LL F+T S  KVR+ +  CLRDVL     +    S S  
Sbjct: 143  VHLLTTVESIMVNEGSDSYNILLNFVTHSDGKVRKLASSCLRDVLQKSHGTKAWQSVSGA 202

Query: 192  VTSLLERFLLLAGGANANSGEGTKGAQQVLDVLDALKECLPFLSLKYKTSILKHFKTLLD 251
            +T + + +L LA  +   S EG +GA+QVL +L  LKECL  +S K+  ++++ FK L+ 
Sbjct: 203  ITEMFQNYLDLAHKSEVGSTEGARGAKQVLYILSTLKECLALMSKKHIATLIEGFKVLMI 262

Query: 252  LRHPLVTRRITDALNFLCLNPXXXXXXXXXXXXXXXXXXXXXXNEMSGDGLTFTTRLLDV 311
            LR P +TR + D+LN +CLNP                      +E S D +TFT RLL V
Sbjct: 263  LRDPYITRPVIDSLNAVCLNPTSEVPVEALLEVLSLAAGLFSGHETSADAMTFTARLLKV 322

Query: 312  GMKKIYTLNRQLCIIKLPIVFNALKDILASEYEEAIYAATDALKSMINSCVDESLIKQGV 371
            GM + +TLNR LC++KLP VFN L DI+ASE+EEAI+AATDALKS+I SC+DESLI++GV
Sbjct: 323  GMTRSFTLNRDLCVVKLPSVFNGLNDIIASEHEEAIFAATDALKSLIFSCIDESLIREGV 382

Query: 372  DQLTLSKNGEPRRSAPTIIEKICATIESLLDYHYAAVWDRVFQIVSAMFQKLGNNSPYFM 431
            +++  S N   R+ +PT+IEK+CAT+ESLLDY Y AVWD  FQ+VSAMF KLG +S YFM
Sbjct: 383  NEIRNS-NLNVRKPSPTVIEKLCATVESLLDYKYHAVWDMAFQVVSAMFDKLGEHSAYFM 441

Query: 432  RGIIKNLEDMQKLPDEDFPFRKQLHVCVGSALAAMGPETLLSLIPLNLEAEDLSDANIWL 491
            R  ++ L DMQ LPDE FP+RKQLH CVGSAL AMGPET LS++ LNLEA DLS+  +WL
Sbjct: 442  RNTLQGLSDMQDLPDEGFPYRKQLHECVGSALGAMGPETFLSIVRLNLEANDLSEVKVWL 501

Query: 492  FPILKQYIVGARLNYFTEEILPMIERVKEKAQKLENRGLMVSSRNADALAYSLWSLLPSF 551
            FPILKQY VG RL++FTE I  M+E +  KAQKL+ +GL V+SR+ D+L YSLW+LLPSF
Sbjct: 502  FPILKQYTVGGRLSFFTEAIFSMVETMSHKAQKLKLQGLPVASRSVDSLVYSLWALLPSF 561

Query: 552  CNYPLDTAKSFXXXXXXXXXXXXXXPDLRGIICTSLQLLIQQNKNIKDSNDQDCAGQDVV 611
            CNYP+DT +SF               +  GIIC SL +LIQQNK + +  +         
Sbjct: 562  CNYPVDTVESFADLGRILCGVLQTQAETHGIICASLNILIQQNKEVVEGKEVPTNDASPA 621

Query: 612  KEEVLVHYSQQVATENLNELKSSARNLLKELSEVFLNTTKDDGGCLQRTIGDIASIADSE 671
             +     Y  Q A  NL  L+  A  LL  LS +F   +KDDGG LQ  IG++ASIA+ +
Sbjct: 622  MQRATARYDSQHAAANLKVLRLCAPKLLDVLSRIFHECSKDDGGSLQSAIGNLASIAEKK 681

Query: 672  YICKLFGEKMWQLYKCTQKASKAGNSKDS-MQIDDASNNVSPLVIRAQLLDFAVSLLPGL 730
             + KL  + + +L + T+ A     S  S M +D+ ++  S   +RA+L D  VSLLPGL
Sbjct: 682  TVSKLLFKTLQELLEATKTAIAQDESPVSGMDVDNTADKNSSSNLRARLFDLLVSLLPGL 741

Query: 731  NEECIALLFQAIKPAFQDVEGVLQKKAYKVLSIILRSKDDFLSLKFEELLGLMIDILPSC 790
            + + +  +F ++KPA QD +G++QKKAYKVLS+IL+S D F+S   EELL LM +I   C
Sbjct: 742  DGQEVDTIFSSLKPAMQDSKGLIQKKAYKVLSVILKSSDGFVSKNLEELLVLMHNI---C 798

Query: 791  HFSAKRHRLDCLYFLIVHVSKSKDNLEHWREIVGSFLTEIILALKEANKKTRNRAYDILV 850
            H SAKRH+LDCLYFL+ H S++ D+L+  ++IV SFL E+ILALKE NKKTRNRAYD+LV
Sbjct: 799  HVSAKRHKLDCLYFLLAHASRT-DDLKERKDIVSSFLPEVILALKEVNKKTRNRAYDVLV 857

Query: 851  EIAHAFGDEERGGNRENLLQFFNMVAGGLAGETPHMISAAAKGLARLAYEFSDLVLTAFN 910
            +I HA+ DEE GG+ E L  +F+MV G LAGE P MISAA KG+ARL YEFSDL+ +A+N
Sbjct: 858  QIGHAYADEENGGDNEKLHGYFDMVVGCLAGEKPQMISAAVKGVARLTYEFSDLISSAYN 917

Query: 911  LLPSTFLLLQRKNREII------------------------------------------- 927
            LLPSTFLLLQRKN+EI                                            
Sbjct: 918  LLPSTFLLLQRKNKEITKANLGLLKVLVAKSPVEGLHANLKSMVEGLLKWPEGTKNLFKA 977

Query: 928  KVKLILGMLVTKCGLEAVKAVLPDEHIKLLTXXXXXXXXXXXXXGAKSEETRSHLSKATT 987
            KV+L+L ML+ KCG EAVK+V+P+EH+KLLT              A S+ ++S  SK T+
Sbjct: 978  KVRLLLEMLIKKCGTEAVKSVMPEEHMKLLTNIRKIKERKEKKYAAGSDISKSQHSKDTS 1037

Query: 988  SRQSRWNHTKVFSDFDEDSGNSDAEYLNAKTMSRGGKSLRLKSAASSFRSNIRLKKNLPE 1047
            S+ SRWN TK+FSD   DS +SD + ++A++  R   S  LKS AS+ RS  +  +N   
Sbjct: 1038 SKVSRWNDTKIFSDVYADSEDSDGDDMDAESHGRSKASSLLKSKASALRS--KKSRNQSH 1095

Query: 1048 HFSDQSDDEPLDLLDRQKTRSALRSSDNLKRKSRLDDEMEVDSEGRLIIREEEEWKNEKP 1107
               D+SDDEPLDL+D+ KTR ALRSS+  KRK+  D+E E D EGRL+IRE E  K ++ 
Sbjct: 1096 LEVDESDDEPLDLMDQHKTRLALRSSELRKRKADSDEEAEFDVEGRLVIREGERSKRKEL 1155

Query: 1108 DDPDYDARSERDTHLSAKSGTKGQKRRKTSDSGWAYTGKEYASKKASGDVKRKDKLEPYA 1167
             D D DA+S + +  S  S  K QKR KTS+SG+AYTGKEYASKKASGD+K+KDKLEPYA
Sbjct: 1156 SDADSDAKSSKGSRFSGNSSKKNQKRMKTSESGYAYTGKEYASKKASGDLKKKDKLEPYA 1215

Query: 1168 YWPLDRKMMSRRPQHRSTARKGMASVVKMTKKLEGQSAS 1206
            YWPLDRKMMSRRP+ R+ A +GM+SVVKM KK+EG+SA+
Sbjct: 1216 YWPLDRKMMSRRPEQRAVAVRGMSSVVKMAKKMEGKSAA 1254


>AT4G23540.1 | Symbols:  | binding | chr4:12280557-12284693 REVERSE
          Length = 675

 Score =  211 bits (536), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 164/567 (28%), Positives = 259/567 (45%), Gaps = 75/567 (13%)

Query: 448 DFPFRKQLHVCVGSALAAMGPETLLSLIPLNLEAEDLSDANIWLFPILKQYIVGARLNYF 507
           D    + L  C+GSA+ AMGP  LL+L+P+ L AE  S  N WL PIL++YI+GA L Y+
Sbjct: 7   DTSSSQDLQQCIGSAVVAMGPVRLLTLLPITLHAESHSCTNAWLIPILRKYIIGASLAYY 66

Query: 508 TEEILPMIERVKEKAQKLENRGLMVSSRNAD--ALAYSLWSLLPSFCNYPLDTAKSFXXX 565
            + I+P+      K+  L ++G   S+   +  A  + L  LLP+FCNYP+D A  F   
Sbjct: 67  VDNIVPLA-----KSLMLASKGAKKSTHGKELRACGHELLRLLPAFCNYPVDVANKFGSL 121

Query: 566 XXXXXXXXXXXPDLRGIICTSLQLLIQQNKNI-KDSNDQDCAG----QDVVKE-EVLVHY 619
                        +   +  SLQ+L+ QNK + K S D   A     +D   E E   HY
Sbjct: 122 AKLMVKFIKKKSFMHEAVALSLQMLVNQNKGMPKPSTDMGEAKAISEEDATTELERGFHY 181

Query: 620 SQQVATENLNELKSSARNLLKELSEVFLNTTKDDGGCLQRTIGDIASIADSEYICKLFGE 679
           S++ +T+N+  L SS+  LL+ L +VF  +  +     +  IG +AS  DS    K+   
Sbjct: 182 SKKASTKNMKALASSSTELLQTLVDVFTVSGTEISADFKAAIGCLASTLDSSVRKKI--- 238

Query: 680 KMWQLYKCTQKASKAGNSKDSMQIDDASNNV----------SPLVIRAQLLDFAVSLLPG 729
               L     K   AG S+   Q++ ++++V             + R+ +LD A S + G
Sbjct: 239 ----LISLLNKFDPAGESETEGQVNQSNDSVDEEKENCSSTKTQLKRSAVLDLASSFVEG 294

Query: 730 LNEECIALLFQAIKPAFQDVEGVLQKKAYKVLSIILRSKDDFLSLKFEELLGLMIDILPS 789
             E+ I L++  ++ +FQ  +      AY  LS +L+    F +  F E++ +++     
Sbjct: 295 AKEDLIELIYNLVRQSFQATDEADLYGAYDTLSRVLQEHGWFCASHFAEVIEMLLSHKTP 354

Query: 790 CHFSAKRHRLDCLYFLIVHVSKSKDNLEHWREIVGSFLTEIILALKEANKKTRNRAYDIL 849
              ++ R R  CL+ L+ H  +S    E+ +  +   L E+IL LKE  ++ R  A D L
Sbjct: 355 EDAASSRSRFACLHVLMAHGIQSSTEEENEKAFL--ILNEMILTLKEGKEEHRKAACDTL 412

Query: 850 VEIAHAFGDEERGGNRENLLQFFNMVAGGLAGETPHMISAAAKGLARLAY---------- 899
           V +     +     + E   +  NM+ G ++G +PH+ S A   L+ L Y          
Sbjct: 413 VMVYTTLKNSSSITSDELCPKLINMITGYISGTSPHIRSGAVSALSALVYKDPEICLSSP 472

Query: 900 ---------------EFSDLVLTAFNLLPST------FLLLQRKNREII----------- 927
                          E    VL    +L ST        LLQ    EI+           
Sbjct: 473 ELLSSVLSLLHTKSIEIIKAVLGFVKVLVSTSQAQDLHSLLQNLLYEILPWSSVSRHYFK 532

Query: 928 -KVKLILGMLVTKCGLEAVKAVLPDEH 953
            KV +I+ ++V KCG  AV+   PD+H
Sbjct: 533 SKVTIIVEIMVRKCGTRAVQLATPDKH 559