Miyakogusa Predicted Gene
- chr4.CM0004.310.nd
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr4.CM0004.310.nd + phase: 0
(347 letters)
Database: TAIR8_pep
32,825 sequences; 13,166,001 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G19810.1 | Symbols: | zinc finger (CCCH-type) family protein... 294 6e-80
AT4G29190.1 | Symbols: | zinc finger (CCCH-type) family protein... 291 3e-79
AT2G25900.1 | Symbols: ATCTH | ATCTH (Arabidopsis thaliana Cys3H... 244 8e-65
AT2G41900.1 | Symbols: | zinc finger (CCCH-type) family protein... 192 2e-49
AT1G03790.1 | Symbols: | zinc finger (CCCH-type) family protein... 190 1e-48
AT5G12850.1 | Symbols: | zinc finger (CCCH-type) family protein... 188 5e-48
AT5G44260.1 | Symbols: | zinc finger (CCCH-type) family protein... 186 3e-47
AT5G58620.1 | Symbols: | zinc finger (CCCH-type) family protein... 184 7e-47
AT2G40140.2 | Symbols: CZF1, ZFAR1 | CZF1/ZFAR1 | chr2:16779615-... 171 6e-43
AT2G40140.1 | Symbols: CZF1, ZFAR1 | CZF1/ZFAR1; transcription f... 171 6e-43
AT3G55980.1 | Symbols: | zinc finger (CCCH-type) family protein... 167 9e-42
AT5G07500.1 | Symbols: PEI1 | PEI1; nucleic acid binding / trans... 165 5e-41
>AT2G19810.1 | Symbols: | zinc finger (CCCH-type) family protein |
chr2:8557501-8558580 FORWARD
Length = 359
Score = 294 bits (752), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 178/356 (50%), Positives = 218/356 (61%), Gaps = 28/356 (7%)
Query: 6 NPTVHVPPWPMVNDPT-TEIFSPLTATNADYDHSPFYLQEALEQYAPS---DADSDP--- 58
NPTVH+PPWP+ D T ++I+ + D S L++Y PS D DSDP
Sbjct: 11 NPTVHIPPWPLSEDLTVSDIYG-----SPDGGSSMMEALAELQRYLPSNEPDPDSDPDLS 65
Query: 59 GRDS-ADVYSFDQFRMFEFKVRNCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGASCA 117
G DS D Y+ D FRM+EFKVR CARGRSHDWTECPYAHPGEKARRRDPRK+HYSG +C
Sbjct: 66 GPDSPIDAYTCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACP 125
Query: 118 DFHKGSCMKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQH 177
+F KG C +GDACEF+HGVFECWLHPARYRTQPCKDG +CRRRVCFFAH+P+Q+RVLP
Sbjct: 126 EFRKGCCKRGDACEFSHGVFECWLHPARYRTQPCKDGGNCRRRVCFFAHSPDQIRVLPNQ 185
Query: 178 SPRPRSVAFEFQXXXXXXXXXXXXXXXXXXXXXXETATPPMSPVAQSLCSSSVGVSEMVA 237
SP R +F+ S S S +++VA
Sbjct: 186 SPD-RVDSFDVLSPTIRRAFQFSISPSSNSPPVSPRGDSDSSCSLLSRSLGSNLGNDVVA 244
Query: 238 SLCNLQLGRVKS-LPSSWNMQMGS--PRFGSPRGPVIRPGFCSLPSTPTQVPPGRGSVNY 294
SL NLQL +VKS L SS+N Q+G FGSPRG V+ PGF SLP+TPT+ PG +
Sbjct: 245 SLRNLQLNKVKSSLSSSYNNQIGGYGSGFGSPRGSVLGPGFRSLPTTPTR--PG-----F 297
Query: 295 FDLWDQRCXXXXXXXXXXXSGRGIRAKMFEKLSKENSLDSSGSGQEDGA---PNVG 347
++W+ SGR +RA++FEKLSKEN + + GA P+VG
Sbjct: 298 MNIWENGL-EEEPAMERVESGRELRAQLFEKLSKENCMGRIEPDPDQGAGDTPDVG 352
>AT4G29190.1 | Symbols: | zinc finger (CCCH-type) family protein |
chr4:14392239-14393309 REVERSE
Length = 356
Score = 291 bits (746), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 175/357 (49%), Positives = 211/357 (59%), Gaps = 28/357 (7%)
Query: 4 RANPTVHVPPWPMVNDPTT-EIFSPLTATNADYDHSPFYLQEALEQYAPS---DADSDP- 58
R PTV +PPWP++ + TT E FSP+ + D S L++Y PS D +S P
Sbjct: 8 RTYPTVEIPPWPVLEELTTSEFFSPVMNSP---DCSMLEALAGLQRYLPSNEPDPESYPD 64
Query: 59 --GRDS-ADVYSFDQFRMFEFKVRNCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGAS 115
G DS D YS D FRM++FKVR CARGRSHDWTECPYAHPGEKARRRDPRKYHYSG +
Sbjct: 65 LLGPDSPIDAYSCDHFRMYDFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTA 124
Query: 116 CADFHKGSCMKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLP 175
C DF KG C KGD+CEFAHGVFECWLHPARYRTQPCKDG +C R++CFFAH+P+QLR L
Sbjct: 125 CPDFRKGGCKKGDSCEFAHGVFECWLHPARYRTQPCKDGGNCLRKICFFAHSPDQLRFLH 184
Query: 176 QHSPRPRSVAFEFQXXXXXXXXXXXXXXXXXXXXXXETATPPMSPVAQSLCSS--SVGVS 233
SP R +F+ A SP+ QSL S S ++
Sbjct: 185 TRSPD-RVDSFDVSSPIRARAFQLSISPVSGSPPMSPRADSESSPMTQSLSRSLGSCSIN 243
Query: 234 EMVASLCNLQLGRVKSLPSSWNMQMGSPRFGSPRGPVIRPGFCSLPSTPTQVPPGRGSVN 293
++V S NLQ VKS P + N G FGSPRG ++ PGF SLP+TPT+ PG
Sbjct: 244 DVVPSFRNLQFNSVKSFPRN-NPLFG---FGSPRGSILGPGFQSLPTTPTR--PGN---- 293
Query: 294 YFDLWDQRCXXXXXXXXXXXSGRGIRAKMFEKLSKENSLDSSGSGQEDG---APNVG 347
D+W+ SGR +R KM EKL KEN +D + AP+VG
Sbjct: 294 -LDIWEYGLEEEPVMERVVESGRELREKMREKLHKENCMDRVAQDPDQNLGEAPDVG 349
>AT2G25900.1 | Symbols: ATCTH | ATCTH (Arabidopsis thaliana Cys3His
zinc finger protein); transcription factor |
chr2:11048895-11049842 FORWARD
Length = 315
Score = 244 bits (622), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 116/187 (62%), Positives = 141/187 (75%), Gaps = 15/187 (8%)
Query: 4 RANPTVHVPPWPMVNDPTTEIFSPLTATNA----DYDHSPF-YLQE--ALEQYAPSDADS 56
R +PT+H+P W +NDPT I SP ++ N DY HSP YL +L +Y PS+ +
Sbjct: 9 RPHPTIHIPQWDQINDPTATISSPFSSVNLNSVNDYPHSPSPYLDSFASLFRYLPSNELT 68
Query: 57 DPGRDS--------ADVYSFDQFRMFEFKVRNCARGRSHDWTECPYAHPGEKARRRDPRK 108
+ S D +S D+FR++EFK+R CARGRSHDWTECP+AHPGEKARRRDPRK
Sbjct: 69 NDSDSSSGDESSPLTDSFSSDEFRIYEFKIRRCARGRSHDWTECPFAHPGEKARRRDPRK 128
Query: 109 YHYSGASCADFHKGSCMKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTP 168
+HYSG +C +F KGSC +GD+CEF+HGVFECWLHP+RYRTQPCKDGTSCRRR+CFFAHT
Sbjct: 129 FHYSGTACPEFRKGSCRRGDSCEFSHGVFECWLHPSRYRTQPCKDGTSCRRRICFFAHTT 188
Query: 169 EQLRVLP 175
EQLRVLP
Sbjct: 189 EQLRVLP 195
>AT2G41900.1 | Symbols: | zinc finger (CCCH-type) family protein |
chr2:17498430-17500580 FORWARD
Length = 716
Score = 192 bits (489), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 84/125 (67%), Positives = 98/125 (78%), Gaps = 4/125 (3%)
Query: 65 VYSFDQFRMFEFKVRNCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGASCADFHKGSC 124
+Y+ D+FRM+ FKVR C+R SHDWTECP+ HPGE ARRRDPRK+HYS C DF KG+C
Sbjct: 256 IYATDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGAC 315
Query: 125 MKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQHS----PR 180
+GD CE+AHGVFECWLHPA+YRT+ CKDGT C RRVCFFAHTPE+LR L + P
Sbjct: 316 RRGDMCEYAHGVFECWLHPAQYRTRLCKDGTGCARRVCFFAHTPEELRPLYASTGSAVPS 375
Query: 181 PRSVA 185
PRS A
Sbjct: 376 PRSNA 380
>AT1G03790.1 | Symbols: | zinc finger (CCCH-type) family protein |
chr1:954588-955769 FORWARD
Length = 393
Score = 190 bits (482), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 82/116 (70%), Positives = 95/116 (81%), Gaps = 1/116 (0%)
Query: 61 DSADVYSFDQFRMFEFKVRNCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGASCADFH 120
DS D Y+ D FRMFEFK+R C R RSHDWT+CP+AHPGEKARRRDPR++ YSG C +F
Sbjct: 73 DSDDPYASDHFRMFEFKIRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFQYSGEVCPEFR 132
Query: 121 K-GSCMKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLP 175
+ G C +GD CEFAHGVFECWLHP RYRT+ CKDG C+R+VCFFAH+P QLRVLP
Sbjct: 133 RGGDCSRGDDCEFAHGVFECWLHPIRYRTEACKDGKHCKRKVCFFAHSPRQLRVLP 188
>AT5G12850.1 | Symbols: | zinc finger (CCCH-type) family protein |
chr5:4057071-4059191 FORWARD
Length = 706
Score = 188 bits (477), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 78/110 (70%), Positives = 90/110 (81%)
Query: 65 VYSFDQFRMFEFKVRNCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGASCADFHKGSC 124
+YS D+FRMF FK+R C+R SHDWTECP+AHPGE ARRRDPRK+HY+ C DF KGSC
Sbjct: 252 IYSTDEFRMFSFKIRPCSRAYSHDWTECPFAHPGENARRRDPRKFHYTCVPCPDFKKGSC 311
Query: 125 MKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVL 174
+GD CE+AHGVFECWLHPA+YRT+ CKDG C RRVCFFAH E+LR L
Sbjct: 312 KQGDMCEYAHGVFECWLHPAQYRTRLCKDGMGCNRRVCFFAHANEELRPL 361
>AT5G44260.1 | Symbols: | zinc finger (CCCH-type) family protein |
chr5:17847201-17848346 REVERSE
Length = 381
Score = 186 bits (471), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 79/116 (68%), Positives = 96/116 (82%), Gaps = 1/116 (0%)
Query: 61 DSADVYSFDQFRMFEFKVRNCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGASCADFH 120
DS D Y+ D FRM+EFK+R C R RSHDWT+CP++HPGEKARRRDPR++HY+G C +F
Sbjct: 51 DSEDPYAGDHFRMYEFKIRRCTRSRSHDWTDCPFSHPGEKARRRDPRRFHYTGEVCPEFS 110
Query: 121 K-GSCMKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLP 175
+ G C +GD C FAHGVFECWLHP+RYRT+ CKDG C+R+VCFFAH+P QLRVLP
Sbjct: 111 RHGDCSRGDECGFAHGVFECWLHPSRYRTEACKDGKHCKRKVCFFAHSPRQLRVLP 166
>AT5G58620.1 | Symbols: | zinc finger (CCCH-type) family protein |
chr5:23711185-23713008 FORWARD
Length = 607
Score = 184 bits (467), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 76/110 (69%), Positives = 90/110 (81%)
Query: 65 VYSFDQFRMFEFKVRNCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGASCADFHKGSC 124
VY D+FRM+ FK++ C+R SHDWTECP+ HPGE ARRRDPRKYHYS C +F KGSC
Sbjct: 204 VYGTDEFRMYAFKIKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSC 263
Query: 125 MKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVL 174
+GD CE+AHG+FECWLHPA+YRT+ CKD T+C RRVCFFAH PE+LR L
Sbjct: 264 SRGDTCEYAHGIFECWLHPAQYRTRLCKDETNCSRRVCFFAHKPEELRPL 313
>AT2G40140.2 | Symbols: CZF1, ZFAR1 | CZF1/ZFAR1 |
chr2:16779615-16781408 FORWARD
Length = 597
Score = 171 bits (433), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 81/134 (60%), Positives = 97/134 (72%), Gaps = 9/134 (6%)
Query: 42 LQEALEQYAPSDA---DSDPGRDSADVYSFDQFRMFEFKVRNCARGRSHDWTECPYAHPG 98
L+ + +Y P+DA D + G VY D FRMF FKV+ C+R SHDWTECP+ HPG
Sbjct: 189 LKSVVTKY-PADASLPDINEG-----VYGTDDFRMFSFKVKPCSRAYSHDWTECPFVHPG 242
Query: 99 EKARRRDPRKYHYSGASCADFHKGSCMKGDACEFAHGVFECWLHPARYRTQPCKDGTSCR 158
E ARRRDPRKY Y+ C +F KGSC KGD+CE+AHGVFE WLHPA+YRT+ CKD T C
Sbjct: 243 ENARRRDPRKYPYTCVPCPEFRKGSCPKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCA 302
Query: 159 RRVCFFAHTPEQLR 172
RRVCFFAH ++LR
Sbjct: 303 RRVCFFAHRRDELR 316
>AT2G40140.1 | Symbols: CZF1, ZFAR1 | CZF1/ZFAR1; transcription
factor | chr2:16779615-16781408 FORWARD
Length = 597
Score = 171 bits (433), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 81/134 (60%), Positives = 97/134 (72%), Gaps = 9/134 (6%)
Query: 42 LQEALEQYAPSDA---DSDPGRDSADVYSFDQFRMFEFKVRNCARGRSHDWTECPYAHPG 98
L+ + +Y P+DA D + G VY D FRMF FKV+ C+R SHDWTECP+ HPG
Sbjct: 189 LKSVVTKY-PADASLPDINEG-----VYGTDDFRMFSFKVKPCSRAYSHDWTECPFVHPG 242
Query: 99 EKARRRDPRKYHYSGASCADFHKGSCMKGDACEFAHGVFECWLHPARYRTQPCKDGTSCR 158
E ARRRDPRKY Y+ C +F KGSC KGD+CE+AHGVFE WLHPA+YRT+ CKD T C
Sbjct: 243 ENARRRDPRKYPYTCVPCPEFRKGSCPKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCA 302
Query: 159 RRVCFFAHTPEQLR 172
RRVCFFAH ++LR
Sbjct: 303 RRVCFFAHRRDELR 316
>AT3G55980.1 | Symbols: | zinc finger (CCCH-type) family protein |
chr3:20787836-20789578 FORWARD
Length = 580
Score = 167 bits (423), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 73/131 (55%), Positives = 95/131 (72%)
Query: 42 LQEALEQYAPSDADSDPGRDSADVYSFDQFRMFEFKVRNCARGRSHDWTECPYAHPGEKA 101
++E ++ + AD+ + VY D+FRM+ FKV+ C+R SHDWTEC + HPGE A
Sbjct: 183 VEEEIKIVSKYPADASLPDINEGVYGSDEFRMYSFKVKPCSRAYSHDWTECAFVHPGENA 242
Query: 102 RRRDPRKYHYSGASCADFHKGSCMKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRV 161
RRRDPRKY Y+ C +F KGSC KGD+CE+AHGVFE WLHPA+Y+T+ CKD T C R+V
Sbjct: 243 RRRDPRKYPYTCVPCPEFRKGSCPKGDSCEYAHGVFESWLHPAQYKTRLCKDETGCARKV 302
Query: 162 CFFAHTPEQLR 172
CFFAH E++R
Sbjct: 303 CFFAHKREEMR 313
>AT5G07500.1 | Symbols: PEI1 | PEI1; nucleic acid binding /
transcription factor | chr5:2372717-2373454 FORWARD
Length = 245
Score = 165 bits (417), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 74/117 (63%), Positives = 88/117 (75%), Gaps = 1/117 (0%)
Query: 56 SDPGRDSADVYSFDQFRMFEFKVRNCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGAS 115
S P D A +Y D+FRM+ +K++ C R RSHDWTECPYAH GEKA RRDPR+Y Y +
Sbjct: 39 SIPNIDDA-IYGSDEFRMYAYKIKRCPRTRSHDWTECPYAHRGEKATRRDPRRYTYCAVA 97
Query: 116 CADFHKGSCMKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLR 172
C F G+C +GD+CEFAHGVFE WLHPARYRT+ C G C+R+VCFFAH PEQLR
Sbjct: 98 CPAFRNGACHRGDSCEFAHGVFEYWLHPARYRTRACNAGNLCQRKVCFFAHAPEQLR 154