Miyakogusa Predicted Gene
- chr4.CM0003.50.nd
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr4.CM0003.50.nd + phase: 2 /pseudo/partial
(478 letters)
Database: TAIR8_pep
32,825 sequences; 13,166,001 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G52580.1 | Symbols: | RAB GTPase activator | chr5:21355278-2... 546 e-155
AT4G28550.1 | Symbols: | RabGAP/TBC domain-containing protein |... 138 9e-33
AT2G20440.1 | Symbols: | RabGAP/TBC domain-containing protein |... 136 2e-32
AT5G54780.1 | Symbols: | RAB GTPase activator | chr5:22265922-2... 131 1e-30
AT4G27100.2 | Symbols: | RAB GTPase activator | chr4:13595851-1... 129 5e-30
AT4G27100.1 | Symbols: | RAB GTPase activator | chr4:13595851-1... 129 6e-30
AT5G24390.1 | Symbols: | RabGAP/TBC domain-containing protein |... 115 6e-26
AT5G53570.1 | Symbols: | RabGAP/TBC domain-containing protein |... 114 1e-25
AT3G49350.1 | Symbols: | RAB GTPase activator | chr3:18308648-1... 114 1e-25
AT3G59570.1 | Symbols: | RabGAP/TBC domain-containing protein |... 113 3e-25
AT5G41940.1 | Symbols: | RabGAP/TBC domain-containing protein |... 111 1e-24
AT2G43490.3 | Symbols: | RAB GTPase activator | chr2:18062183-1... 110 2e-24
AT2G43490.2 | Symbols: | RAB GTPase activator | chr2:18062183-1... 110 2e-24
AT2G43490.1 | Symbols: | RAB GTPase activator | chr2:18062183-1... 110 2e-24
AT2G43490.4 | Symbols: | RAB GTPase activator | chr2:18062183-1... 110 2e-24
AT2G43490.5 | Symbols: | RAB GTPase activator | chr2:18062376-1... 110 3e-24
AT4G13730.1 | Symbols: | RabGAP/TBC domain-containing protein |... 84 1e-16
AT4G13730.2 | Symbols: | RabGAP/TBC domain-containing protein |... 84 2e-16
AT1G04830.1 | Symbols: | RabGAP/TBC domain-containing protein |... 80 3e-15
AT2G30710.1 | Symbols: | RabGAP/TBC domain-containing protein |... 76 4e-14
AT3G02460.2 | Symbols: | plant adhesion molecule, putative | ch... 69 7e-12
AT3G02460.1 | Symbols: | plant adhesion molecule, putative | ch... 69 1e-11
AT5G15930.1 | Symbols: PAM1 | PAM1 (PLANT ADHESION MOLECULE 1); ... 66 4e-11
AT3G07890.2 | Symbols: | RabGAP/TBC domain-containing protein |... 64 2e-10
AT3G07890.1 | Symbols: | RabGAP/TBC domain-containing protein |... 64 2e-10
AT3G55020.1 | Symbols: | RabGAP/TBC domain-containing protein |... 61 2e-09
AT2G37290.1 | Symbols: | RabGAP/TBC domain-containing protein |... 51 1e-06
AT2G39280.1 | Symbols: | RAB GTPase activator | chr2:16409079-1... 47 3e-05
>AT5G52580.1 | Symbols: | RAB GTPase activator |
chr5:21355278-21360074 FORWARD
Length = 673
Score = 546 bits (1406), Expect = e-155, Method: Compositional matrix adjust.
Identities = 287/466 (61%), Positives = 340/466 (72%), Gaps = 22/466 (4%)
Query: 1 SAEDANVFLVNDFQNTLQRTLSSLELPRAVSLACGPSNTPXXXXXXXXXXXXGDSGVYNG 60
S+ED NVF+VNDFQ+ LQRTLSSLELP ++ +A G S P S V N
Sbjct: 164 SSEDQNVFIVNDFQSPLQRTLSSLELPSSLPVASGQSVYPLDGGSSSENQRRTSSDVGNR 223
Query: 61 SASVPQFHGRPRHKVQDPARDLSIQVLEKFSLVTKFARETTSQLFRENHSNGFSVHERRT 120
+SV Q G + K DP RDLSI +LEKFSLVTKFAR+TT+QLF EN NGF ++R
Sbjct: 224 VSSVSQ-SGFRKQKSHDPTRDLSIHLLEKFSLVTKFARDTTTQLFSEN--NGFGSIDKRW 280
Query: 121 HIQSNLDPPKKSSNVAEN--------------ISDESPAVLDSQ----EFDKLSLVWGKP 162
+ Q P+K SN+AE + D+ + +D EFDKLSL+WGKP
Sbjct: 281 NNQPVHSYPEKLSNIAEEKHHEIRHSYSENDLLKDDEISYIDVPADPLEFDKLSLMWGKP 340
Query: 163 RQPPLGSEELITFLDSEGRVTDSEAFRKRIFYGGLDHKLRIEVWGLLLGYYPYESTYAER 222
RQPP+G +E LDSEGRV +S+A R+R+FYGG++H+LR EVW LLGYY Y+STYAER
Sbjct: 341 RQPPMGHKEFTALLDSEGRVVESKALRERVFYGGIEHQLRREVWPFLLGYYAYDSTYAER 400
Query: 223 EYLKTVKKSEYETIKNQWQSISSAQARRFTKFRERKGLIEKDVVRTDRSLNFYEGDDNPN 282
EYL++VK+ EY T+K QWQSIS QA+RFTK+RERKGLI+KDVVRTDR+ +YEGDDN +
Sbjct: 401 EYLRSVKRMEYATLKQQWQSISPEQAKRFTKYRERKGLIDKDVVRTDRAFEYYEGDDNLH 460
Query: 283 VNVLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMGDESEAFWCFVALMERLGPNFNRDQ 342
VN +RDILLTYSFYNFDLGYCQGMSD LSPILFVM DESE+FWCFVALMERLGPNFNRDQ
Sbjct: 461 VNSMRDILLTYSFYNFDLGYCQGMSDYLSPILFVMEDESESFWCFVALMERLGPNFNRDQ 520
Query: 343 NGMHSQLFALSKLVELLDSPLHNYFKQRDCLNYFFCFRWVLIQFKREFEYEDTMRLWEIL 402
NGMH+QLFALSKLVELLDSPLHNYFK+ DCLNYFFCFRW+LIQFKREFEYE TM+LWE++
Sbjct: 521 NGMHTQLFALSKLVELLDSPLHNYFKENDCLNYFFCFRWILIQFKREFEYEKTMQLWEVM 580
Query: 403 LAHYPSEHLSPFFVVWKGXTNRKQIIGEERT-SPPLKFIKTXVAHC 447
HY SEH + V R +I+GE+ LKFI H
Sbjct: 581 WTHYLSEHFHLYVCVAVLKRCRSKIMGEQMDFDTLLKFINELSGHI 626
>AT4G28550.1 | Symbols: | RabGAP/TBC domain-containing protein |
chr4:14111210-14113474 FORWARD
Length = 424
Score = 138 bits (347), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 85/258 (32%), Positives = 130/258 (50%), Gaps = 39/258 (15%)
Query: 184 DSEAFRKRIFYGGLDHKLRIEVWGLLLGYYPYESTYAEREYLKTVKKSEY----ETIKN- 238
D E +RI GG+ ++ EVW LLG Y +ST+ ER L+ ++ +Y E KN
Sbjct: 58 DMERVLRRIQRGGIHPSIKGEVWEFLLGAYDPDSTFEERNKLRNHRREQYYAWKEECKNM 117
Query: 239 ------------------------------QWQSISSAQARRFTKFRERKGLIEKDVVRT 268
+W ++ +R ++ I DVVRT
Sbjct: 118 VPLVGSGKFVTMAVVAEDGQPLEESSVDNQEWVVKTAITDKRVLQWMLVLSQIGLDVVRT 177
Query: 269 DRSLNFYEGDDNPNVNVLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMGDESEAFWCFV 328
DR L FYE + N L DIL Y++ N D+GY QGM+D+ SP++ ++ DE++AFWCF
Sbjct: 178 DRYLCFYESESNQAR--LWDILSIYTWLNPDIGYVQGMNDICSPMIILLEDEADAFWCFE 235
Query: 329 ALMERLGPNFNRDQN--GMHSQLFALSKLVELLDSPLHNYFKQRDCLNYFFCFRWVLIQF 386
M RL NF G+ +QL LS++++ +D LH + + D Y F R +++ F
Sbjct: 236 RAMRRLRENFRTTATSMGVQTQLGMLSQVIKTVDPRLHQHLEDLDGGEYLFAIRMLMVLF 295
Query: 387 KREFEYEDTMRLWEILLA 404
+REF + D + LWE++ A
Sbjct: 296 RREFSFLDALYLWELMWA 313
>AT2G20440.1 | Symbols: | RabGAP/TBC domain-containing protein |
chr2:8818115-8820332 REVERSE
Length = 425
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 82/258 (31%), Positives = 127/258 (49%), Gaps = 39/258 (15%)
Query: 184 DSEAFRKRIFYGGLDHKLRIEVWGLLLGYYPYESTYAEREYLKTVKKSEY---------- 233
D E +RI GG+ ++ VW LLG Y +ST+ ER L+ ++ +Y
Sbjct: 58 DMEKVLRRIQRGGIHPSIKGAVWEFLLGCYDPDSTFEERNILRNRRREQYGAWKEECKKM 117
Query: 234 ------------------------ETIKNQ-WQSISSAQARRFTKFRERKGLIEKDVVRT 268
+++NQ W ++ R ++ I DV RT
Sbjct: 118 VPVIGSGKYVTMAVVQENGNPIDESSVENQGWIVKNTVTDERVLQWMLSLHQIGLDVART 177
Query: 269 DRSLNFYEGDDNPNVNVLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMGDESEAFWCFV 328
DR L FYE D N + L D+L Y++ N D+GY QGM+D+ SP++ + DE +AFWCF
Sbjct: 178 DRYLCFYENDRNQ--SKLWDVLAIYTWLNLDIGYVQGMNDICSPMIILFDDEGDAFWCFE 235
Query: 329 ALMERLGPNFNRDQN--GMHSQLFALSKLVELLDSPLHNYFKQRDCLNYFFCFRWVLIQF 386
M RL NF G+ +QL LS++++ +D LH + + D Y F R +++ F
Sbjct: 236 RAMRRLRENFRATATSMGVQTQLGVLSQVIKTVDPRLHQHLEDLDGGEYLFAIRMLMVLF 295
Query: 387 KREFEYEDTMRLWEILLA 404
+REF + D + LWE++ A
Sbjct: 296 RREFSFLDALYLWELMWA 313
>AT5G54780.1 | Symbols: | RAB GTPase activator |
chr5:22265922-22268918 REVERSE
Length = 432
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 89/263 (33%), Positives = 136/263 (51%), Gaps = 52/263 (19%)
Query: 191 RIFYGGLDHKLRIEVWGLLLGYYPYESTYAE---------------REYLKTV------- 228
RI GG+ +R EVW LLG Y +ST+ E +E K +
Sbjct: 58 RIQRGGIHPSIRGEVWEFLLGCYDPKSTFEEREQIRQRRRLQYASWKEECKQMFPVIGSG 117
Query: 229 ---------KKSE--YETIKNQWQSISSAQARRFTKFRERKGLIEK-------------D 264
K E Y+ I Q ++ + + F R L +K D
Sbjct: 118 GFITAPVITNKGEPIYDPIVLQETNLGANGSDFFKDLASRGPLDQKVIQWLLTLHQIGLD 177
Query: 265 VVRTDRSLNFYEGDDNPNVNVLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMGDESEAF 324
V RTDR+L FYE +N ++ L DIL Y++ + D+GYCQGMSDL SP++ ++ DE++AF
Sbjct: 178 VNRTDRTLVFYEKKEN--LSKLWDILALYAWIDNDVGYCQGMSDLCSPMIMLLEDEADAF 235
Query: 325 WCFVALMERLGPNFNRDQN---GMHSQLFALSKLVELLDSPLHNYFKQRDCLNYFFCFRW 381
WCF LM RL NF RD G+ +QL L+ + +++D LH++ ++ +Y F R
Sbjct: 236 WCFERLMRRLRGNF-RDTGRSVGVEAQLTHLASITQIIDPKLHHHLEKLGGGDYLFAIRM 294
Query: 382 VLIQFKREFEYEDTMRLWEILLA 404
+++QF+REF + D++ LWE++ A
Sbjct: 295 IMVQFRREFSFCDSLYLWEMMWA 317
>AT4G27100.2 | Symbols: | RAB GTPase activator |
chr4:13595851-13598626 FORWARD
Length = 433
Score = 129 bits (324), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 89/265 (33%), Positives = 137/265 (51%), Gaps = 52/265 (19%)
Query: 190 KRIFYGGLDHKLRIEVWGLLLGYYPYESTYAEREYLKTVKKSEYETIKNQW-QSISSAQA 248
+RI GG+ +R EVW LLG Y ST+ ERE ++ ++ +Y + K + Q +
Sbjct: 57 RRIRRGGIHPSIRGEVWEFLLGCYDPMSTFEEREQIRQRRRLQYASWKEECKQMFPVIGS 116
Query: 249 RRFTK-------------------------------FRE--RKGLIEK------------ 263
RFT F+E +G ++K
Sbjct: 117 GRFTTAPVITENGQPNYDPLVLQEINLGTNSNGSVFFKELTSRGPLDKKIIQWLLTLHQI 176
Query: 264 --DVVRTDRSLNFYEGDDNPNVNVLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMGDES 321
DV RTDR+L FYE +N ++ L DIL Y++ + D+GYCQGMSDL SP++ ++ DE+
Sbjct: 177 GLDVNRTDRALVFYEKKEN--LSKLWDILSVYAWIDNDVGYCQGMSDLCSPMIILLEDEA 234
Query: 322 EAFWCFVALMERLGPNFNRDQN--GMHSQLFALSKLVELLDSPLHNYFKQRDCLNYFFCF 379
+AFWCF LM RL NF G+ +QL LS + +++D LH + + +Y F
Sbjct: 235 DAFWCFERLMRRLRGNFRSTGRSVGVEAQLTHLSSITQVVDPKLHQHLDKLGGGDYLFAI 294
Query: 380 RWVLIQFKREFEYEDTMRLWEILLA 404
R +++QF+REF + D++ LWE++ A
Sbjct: 295 RMLMVQFRREFSFCDSLYLWEMMWA 319
>AT4G27100.1 | Symbols: | RAB GTPase activator |
chr4:13595851-13598540 FORWARD
Length = 436
Score = 129 bits (323), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 89/265 (33%), Positives = 137/265 (51%), Gaps = 52/265 (19%)
Query: 190 KRIFYGGLDHKLRIEVWGLLLGYYPYESTYAEREYLKTVKKSEYETIKNQW-QSISSAQA 248
+RI GG+ +R EVW LLG Y ST+ ERE ++ ++ +Y + K + Q +
Sbjct: 57 RRIRRGGIHPSIRGEVWEFLLGCYDPMSTFEEREQIRQRRRLQYASWKEECKQMFPVIGS 116
Query: 249 RRFTK-------------------------------FRE--RKGLIEK------------ 263
RFT F+E +G ++K
Sbjct: 117 GRFTTAPVITENGQPNYDPLVLQEINLGTNSNGSVFFKELTSRGPLDKKIIQWLLTLHQI 176
Query: 264 --DVVRTDRSLNFYEGDDNPNVNVLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMGDES 321
DV RTDR+L FYE +N ++ L DIL Y++ + D+GYCQGMSDL SP++ ++ DE+
Sbjct: 177 GLDVNRTDRALVFYEKKEN--LSKLWDILSVYAWIDNDVGYCQGMSDLCSPMIILLEDEA 234
Query: 322 EAFWCFVALMERLGPNFNRDQN--GMHSQLFALSKLVELLDSPLHNYFKQRDCLNYFFCF 379
+AFWCF LM RL NF G+ +QL LS + +++D LH + + +Y F
Sbjct: 235 DAFWCFERLMRRLRGNFRSTGRSVGVEAQLTHLSSITQVVDPKLHQHLDKLGGGDYLFAI 294
Query: 380 RWVLIQFKREFEYEDTMRLWEILLA 404
R +++QF+REF + D++ LWE++ A
Sbjct: 295 RMLMVQFRREFSFCDSLYLWEMMWA 319
>AT5G24390.1 | Symbols: | RabGAP/TBC domain-containing protein |
chr5:8327007-8329241 REVERSE
Length = 528
Score = 115 bits (288), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 78/116 (67%)
Query: 289 ILLTYSFYNFDLGYCQGMSDLLSPILFVMGDESEAFWCFVALMERLGPNFNRDQNGMHSQ 348
+L Y+ ++ ++GYCQGMSDLLSPIL V+ D+ EAFWCFV M++ NF D+ G+ Q
Sbjct: 322 VLEAYALHDPEIGYCQGMSDLLSPILSVIPDDYEAFWCFVGFMKKARQNFRVDEVGITRQ 381
Query: 349 LFALSKLVELLDSPLHNYFKQRDCLNYFFCFRWVLIQFKREFEYEDTMRLWEILLA 404
L +SK+++ DS L+ + ++ + FF +R VL+ F+RE E T+ LWE++ A
Sbjct: 382 LNIVSKIIKSKDSQLYKHLEKVKAEDCFFVYRMVLVMFRRELTLEQTLHLWEVIWA 437
>AT5G53570.1 | Symbols: | RabGAP/TBC domain-containing protein |
chr5:21778150-21780308 REVERSE
Length = 550
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 77/116 (66%)
Query: 289 ILLTYSFYNFDLGYCQGMSDLLSPILFVMGDESEAFWCFVALMERLGPNFNRDQNGMHSQ 348
IL Y+ Y+ ++GYCQGMSDLLSPIL V+ ++ EAFWCFV M++ NF D+ G+ Q
Sbjct: 343 ILEAYAMYDPEIGYCQGMSDLLSPILAVISEDHEAFWCFVGFMKKARHNFRLDEAGIQRQ 402
Query: 349 LFALSKLVELLDSPLHNYFKQRDCLNYFFCFRWVLIQFKREFEYEDTMRLWEILLA 404
L +SK+++ DS L+ + + + F +R VL+ F+RE +E T+ LWE++ A
Sbjct: 403 LSIVSKIIKNKDSQLYKHLENLQAEDCSFVYRMVLVMFRRELSFEQTLCLWEVMWA 458
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 161 KPRQPPLGSEELITFLDSEGRVTDSE-AFRKRIFYGGLDHKLRIEVWGLLLGYYPYESTY 219
+ R+ L + + EG++ D F K++ G+D +R EVW LLG Y ST
Sbjct: 90 RKRKWALTPHQWRSLFTPEGKLRDGGVGFLKKVRSRGVDPSIRAEVWLFLLGVYDLNSTS 149
Query: 220 AEREYLKTVKKSEYETIKNQWQSI 243
ERE +KT K+ EYE ++ + Q +
Sbjct: 150 EEREAVKTQKRKEYEKLQRRCQML 173
>AT3G49350.1 | Symbols: | RAB GTPase activator |
chr3:18308648-18310831 REVERSE
Length = 539
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 77/116 (66%)
Query: 289 ILLTYSFYNFDLGYCQGMSDLLSPILFVMGDESEAFWCFVALMERLGPNFNRDQNGMHSQ 348
+L Y+ Y+ D+GYCQGMSDLLSPIL V+ D+ E FWCFV M++ NF D+ G+ Q
Sbjct: 335 VLEAYALYDPDIGYCQGMSDLLSPILSVIPDDHEVFWCFVGFMKKARHNFRLDEVGIRRQ 394
Query: 349 LFALSKLVELLDSPLHNYFKQRDCLNYFFCFRWVLIQFKREFEYEDTMRLWEILLA 404
L +SK+++ DS L+ + ++ + FF +R V++ F+RE + T+ LWE++ A
Sbjct: 395 LNIVSKIIKSKDSQLYRHLEKLQAEDCFFVYRMVVVMFRRELTLDQTLCLWEVMWA 450
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 175 FLDSEGRVTDSEA-FRKRIFYGGLDHKLRIEVWGLLLGYYPYESTYAEREYLKTVKKSEY 233
F +GR+ + K++ G++ +R+EVW LLG Y + S+ ER ++ ++ EY
Sbjct: 77 FFTPDGRLRNGGVDLLKKVRSRGIEPSIRLEVWPFLLGLYGFNSSKEERVTIRNRRRKEY 136
Query: 234 ETIKNQ 239
E ++ Q
Sbjct: 137 ERLRRQ 142
>AT3G59570.1 | Symbols: | RabGAP/TBC domain-containing protein |
chr3:22012007-22016379 REVERSE
Length = 720
Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 86/142 (60%), Gaps = 3/142 (2%)
Query: 264 DVVRTDRSLNFYEGDDNPNVNVLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMGDESEA 323
DVVRTD L FYE D N+ + DIL Y++ + GYCQGMSDL+SP +F+ D ++A
Sbjct: 369 DVVRTDSHLEFYE--DPGNLGRMSDILAVYAWVDPATGYCQGMSDLVSPFVFLFEDNADA 426
Query: 324 FWCFVALMERLGPNFNRDQ-NGMHSQLFALSKLVELLDSPLHNYFKQRDCLNYFFCFRWV 382
FWCF L+ R NF + G+ QL +L ++++L D + ++ + + F FR +
Sbjct: 427 FWCFEMLIRRTRANFQMEGPTGVMDQLQSLWRILQLTDKEMFSHLSRIGAESLHFAFRML 486
Query: 383 LIQFKREFEYEDTMRLWEILLA 404
L+ F+RE + +R+WE++ A
Sbjct: 487 LVLFRRELSFNKALRMWEMMWA 508
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Query: 149 SQEFDKLSLVWGKPRQPPLGSEELITFLDSEGRVTDSEAFRKRIFYGGLDHKLRIEVWGL 208
SQ ++ L GK +P E+ D +G+V+ K I GG+D +R EVW
Sbjct: 36 SQSRIQVVLTIGKMLKP----EKWQALFDGDGKVSSFHKALKLIILGGIDPSIRAEVWEF 91
Query: 209 LLGYYPYESTYAEREYLKTVKKSEYETIKNQWQSISSA 246
LLG Y ST R L+ ++ Y + Q Q + S
Sbjct: 92 LLGCYALSSTSEYRTQLRVARRERYNELLKQCQMMHST 129
>AT5G41940.1 | Symbols: | RabGAP/TBC domain-containing protein |
chr5:16799267-16802679 FORWARD
Length = 549
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 77/119 (64%)
Query: 286 LRDILLTYSFYNFDLGYCQGMSDLLSPILFVMGDESEAFWCFVALMERLGPNFNRDQNGM 345
L IL Y+ Y+ ++GYCQGMSDLLSP++ VM D+ AFWCFV M + NF D+ G+
Sbjct: 347 LVGILEAYAVYDPEIGYCQGMSDLLSPLIAVMEDDVLAFWCFVGFMSKARHNFRLDEVGI 406
Query: 346 HSQLFALSKLVELLDSPLHNYFKQRDCLNYFFCFRWVLIQFKREFEYEDTMRLWEILLA 404
QL +SK+++ D L+ + + + + FF +R V++ F+RE +E T+ LWE++ A
Sbjct: 407 RRQLSMVSKIIKFKDIHLYRHLENLEAEDCFFVYRMVVVLFRRELTFEQTLCLWEVMWA 465
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 163 RQPPLGSEELITFLDSEGRVTDSEA-FRKRIFYGGLDHKLRIEVWGLLLGYYPYESTYAE 221
R+ L ++ F EGR++D F K++ GG+ +R EVW LLG Y +S E
Sbjct: 85 RKRVLQPKQWNAFFTEEGRLSDGGVKFLKKVRSGGVHPSIRPEVWPFLLGVYDLKSNKEE 144
Query: 222 REYLKTVKKSEYETIKNQWQSI 243
R+ ++ +K +EYE ++ Q + I
Sbjct: 145 RDSIRQLKLTEYENLRRQCREI 166
>AT2G43490.3 | Symbols: | RAB GTPase activator |
chr2:18062183-18065256 REVERSE
Length = 745
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 97/174 (55%), Gaps = 3/174 (1%)
Query: 232 EYETIKNQWQSISSAQARRFTKFRERKGLIEKDVVRTDRSLNFYEGDDNPNVNVLRDILL 291
E ++K+ + + R +++ I DVVRTD L FYE D N+ + DIL
Sbjct: 333 EMASVKDTPSRVGNVTEDRVSEWLWTLHRIVVDVVRTDSHLEFYE--DPGNLGRMSDILA 390
Query: 292 TYSFYNFDLGYCQGMSDLLSPILFVMGDESEAFWCFVALMERLGPNFNRDQ-NGMHSQLF 350
Y++ + GYCQGMSDL+SP + + D ++AFWCF L+ R NF + G+ QL
Sbjct: 391 VYAWVDPATGYCQGMSDLVSPFVVLFEDNADAFWCFEMLIRRTRANFQMEGPTGVMDQLQ 450
Query: 351 ALSKLVELLDSPLHNYFKQRDCLNYFFCFRWVLIQFKREFEYEDTMRLWEILLA 404
+L ++++ D + ++ + + F FR +L+ F+RE + + +R+WE++ A
Sbjct: 451 SLWHILQITDKDIFSHLSRIGAESLHFAFRMLLVLFRRELSFNEALRMWEMMWA 504
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 149 SQEFDKLSLVWGKPRQPPLGSEELITFLDSEGRVTDSEAFRKRIFYGGLDHKLRIEVWGL 208
SQ ++ + GK +P E+ DS+GRV+ + K I GG+D +R EVW
Sbjct: 36 SQSRIQVVITIGKMLKP----EKWQASFDSDGRVSGFQKALKLIILGGIDPSIRAEVWEF 91
Query: 209 LLGYYPYESTYAEREYLKTVKKSEYETIKNQWQSISSA 246
LLG Y ST R L+ ++ Y + Q Q++ S+
Sbjct: 92 LLGCYALSSTSEYRNQLRVARRKRYNDLLKQCQTMHSS 129
>AT2G43490.2 | Symbols: | RAB GTPase activator |
chr2:18062183-18065256 REVERSE
Length = 745
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 97/174 (55%), Gaps = 3/174 (1%)
Query: 232 EYETIKNQWQSISSAQARRFTKFRERKGLIEKDVVRTDRSLNFYEGDDNPNVNVLRDILL 291
E ++K+ + + R +++ I DVVRTD L FYE D N+ + DIL
Sbjct: 333 EMASVKDTPSRVGNVTEDRVSEWLWTLHRIVVDVVRTDSHLEFYE--DPGNLGRMSDILA 390
Query: 292 TYSFYNFDLGYCQGMSDLLSPILFVMGDESEAFWCFVALMERLGPNFNRDQ-NGMHSQLF 350
Y++ + GYCQGMSDL+SP + + D ++AFWCF L+ R NF + G+ QL
Sbjct: 391 VYAWVDPATGYCQGMSDLVSPFVVLFEDNADAFWCFEMLIRRTRANFQMEGPTGVMDQLQ 450
Query: 351 ALSKLVELLDSPLHNYFKQRDCLNYFFCFRWVLIQFKREFEYEDTMRLWEILLA 404
+L ++++ D + ++ + + F FR +L+ F+RE + + +R+WE++ A
Sbjct: 451 SLWHILQITDKDIFSHLSRIGAESLHFAFRMLLVLFRRELSFNEALRMWEMMWA 504
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 149 SQEFDKLSLVWGKPRQPPLGSEELITFLDSEGRVTDSEAFRKRIFYGGLDHKLRIEVWGL 208
SQ ++ + GK +P E+ DS+GRV+ + K I GG+D +R EVW
Sbjct: 36 SQSRIQVVITIGKMLKP----EKWQASFDSDGRVSGFQKALKLIILGGIDPSIRAEVWEF 91
Query: 209 LLGYYPYESTYAEREYLKTVKKSEYETIKNQWQSISSA 246
LLG Y ST R L+ ++ Y + Q Q++ S+
Sbjct: 92 LLGCYALSSTSEYRNQLRVARRKRYNDLLKQCQTMHSS 129
>AT2G43490.1 | Symbols: | RAB GTPase activator |
chr2:18062183-18065256 REVERSE
Length = 745
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 97/174 (55%), Gaps = 3/174 (1%)
Query: 232 EYETIKNQWQSISSAQARRFTKFRERKGLIEKDVVRTDRSLNFYEGDDNPNVNVLRDILL 291
E ++K+ + + R +++ I DVVRTD L FYE D N+ + DIL
Sbjct: 333 EMASVKDTPSRVGNVTEDRVSEWLWTLHRIVVDVVRTDSHLEFYE--DPGNLGRMSDILA 390
Query: 292 TYSFYNFDLGYCQGMSDLLSPILFVMGDESEAFWCFVALMERLGPNFNRDQ-NGMHSQLF 350
Y++ + GYCQGMSDL+SP + + D ++AFWCF L+ R NF + G+ QL
Sbjct: 391 VYAWVDPATGYCQGMSDLVSPFVVLFEDNADAFWCFEMLIRRTRANFQMEGPTGVMDQLQ 450
Query: 351 ALSKLVELLDSPLHNYFKQRDCLNYFFCFRWVLIQFKREFEYEDTMRLWEILLA 404
+L ++++ D + ++ + + F FR +L+ F+RE + + +R+WE++ A
Sbjct: 451 SLWHILQITDKDIFSHLSRIGAESLHFAFRMLLVLFRRELSFNEALRMWEMMWA 504
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 149 SQEFDKLSLVWGKPRQPPLGSEELITFLDSEGRVTDSEAFRKRIFYGGLDHKLRIEVWGL 208
SQ ++ + GK +P E+ DS+GRV+ + K I GG+D +R EVW
Sbjct: 36 SQSRIQVVITIGKMLKP----EKWQASFDSDGRVSGFQKALKLIILGGIDPSIRAEVWEF 91
Query: 209 LLGYYPYESTYAEREYLKTVKKSEYETIKNQWQSISSA 246
LLG Y ST R L+ ++ Y + Q Q++ S+
Sbjct: 92 LLGCYALSSTSEYRNQLRVARRKRYNDLLKQCQTMHSS 129
>AT2G43490.4 | Symbols: | RAB GTPase activator |
chr2:18062183-18065256 REVERSE
Length = 743
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 97/174 (55%), Gaps = 3/174 (1%)
Query: 232 EYETIKNQWQSISSAQARRFTKFRERKGLIEKDVVRTDRSLNFYEGDDNPNVNVLRDILL 291
E ++K+ + + R +++ I DVVRTD L FYE D N+ + DIL
Sbjct: 333 EMASVKDTPSRVGNVTEDRVSEWLWTLHRIVVDVVRTDSHLEFYE--DPGNLGRMSDILA 390
Query: 292 TYSFYNFDLGYCQGMSDLLSPILFVMGDESEAFWCFVALMERLGPNFNRDQ-NGMHSQLF 350
Y++ + GYCQGMSDL+SP + + D ++AFWCF L+ R NF + G+ QL
Sbjct: 391 VYAWVDPATGYCQGMSDLVSPFVVLFEDNADAFWCFEMLIRRTRANFQMEGPTGVMDQLQ 450
Query: 351 ALSKLVELLDSPLHNYFKQRDCLNYFFCFRWVLIQFKREFEYEDTMRLWEILLA 404
+L ++++ D + ++ + + F FR +L+ F+RE + + +R+WE++ A
Sbjct: 451 SLWHILQITDKDIFSHLSRIGAESLHFAFRMLLVLFRRELSFNEALRMWEMMWA 504
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 149 SQEFDKLSLVWGKPRQPPLGSEELITFLDSEGRVTDSEAFRKRIFYGGLDHKLRIEVWGL 208
SQ ++ + GK +P E+ DS+GRV+ + K I GG+D +R EVW
Sbjct: 36 SQSRIQVVITIGKMLKP----EKWQASFDSDGRVSGFQKALKLIILGGIDPSIRAEVWEF 91
Query: 209 LLGYYPYESTYAEREYLKTVKKSEYETIKNQWQSISSA 246
LLG Y ST R L+ ++ Y + Q Q++ S+
Sbjct: 92 LLGCYALSSTSEYRNQLRVARRKRYNDLLKQCQTMHSS 129
>AT2G43490.5 | Symbols: | RAB GTPase activator |
chr2:18062376-18065256 REVERSE
Length = 707
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 97/174 (55%), Gaps = 3/174 (1%)
Query: 232 EYETIKNQWQSISSAQARRFTKFRERKGLIEKDVVRTDRSLNFYEGDDNPNVNVLRDILL 291
E ++K+ + + R +++ I DVVRTD L FYE D N+ + DIL
Sbjct: 333 EMASVKDTPSRVGNVTEDRVSEWLWTLHRIVVDVVRTDSHLEFYE--DPGNLGRMSDILA 390
Query: 292 TYSFYNFDLGYCQGMSDLLSPILFVMGDESEAFWCFVALMERLGPNFNRDQ-NGMHSQLF 350
Y++ + GYCQGMSDL+SP + + D ++AFWCF L+ R NF + G+ QL
Sbjct: 391 VYAWVDPATGYCQGMSDLVSPFVVLFEDNADAFWCFEMLIRRTRANFQMEGPTGVMDQLQ 450
Query: 351 ALSKLVELLDSPLHNYFKQRDCLNYFFCFRWVLIQFKREFEYEDTMRLWEILLA 404
+L ++++ D + ++ + + F FR +L+ F+RE + + +R+WE++ A
Sbjct: 451 SLWHILQITDKDIFSHLSRIGAESLHFAFRMLLVLFRRELSFNEALRMWEMMWA 504
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 149 SQEFDKLSLVWGKPRQPPLGSEELITFLDSEGRVTDSEAFRKRIFYGGLDHKLRIEVWGL 208
SQ ++ + GK +P E+ DS+GRV+ + K I GG+D +R EVW
Sbjct: 36 SQSRIQVVITIGKMLKP----EKWQASFDSDGRVSGFQKALKLIILGGIDPSIRAEVWEF 91
Query: 209 LLGYYPYESTYAEREYLKTVKKSEYETIKNQWQSISSA 246
LLG Y ST R L+ ++ Y + Q Q++ S+
Sbjct: 92 LLGCYALSSTSEYRNQLRVARRKRYNDLLKQCQTMHSS 129
>AT4G13730.1 | Symbols: | RabGAP/TBC domain-containing protein |
chr4:7970295-7974051 FORWARD
Length = 449
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 127/286 (44%), Gaps = 65/286 (22%)
Query: 181 RVTDSEAFRKRIFYGGL--DHKLRIEVWGLLLGYYPYESTYAEREYLKTVKKSEYETIKN 238
+V D + RK I GL D +R VW LLL Y + + E K K+S+Y+ K
Sbjct: 110 KVIDLKELRK-IASQGLPDDAGIRSIVWKLLLDYLSPDRSLWSSELAK--KRSQYKQFKE 166
Query: 239 QWQSISSAQARRFTK----------------------------------------FRERK 258
+ S R+ K F++ +
Sbjct: 167 ELLMNPSEVTRKMDKSKGGDSNDPKIESPGALSRSEITHEDHPLSLGTTSLWNNFFKDTE 226
Query: 259 GL--IEKDVVRTDRSLNFYEGDD---NPNVNVLRDILLTYSFYNFDLGYCQGMSDLLSPI 313
L IE+DV+RT ++F+ GD N + L++IL ++ N + Y QGM+++L+PI
Sbjct: 227 VLEQIERDVMRTHPDMHFFSGDSAVAKSNQDALKNILTIFAKLNPGIRYVQGMNEILAPI 286
Query: 314 LFVMGD----------ESEAFWCFVALMERLGPNFNRDQN----GMHSQLFALSKLVELL 359
++ + ES+AF+CFV LM NF + + G+ + LS L++
Sbjct: 287 FYIFKNDPDKGNAAYAESDAFFCFVELMSGFRDNFCQQLDNSVVGIRYTITRLSLLLKHH 346
Query: 360 DSPLHNYFKQRDCLN-YFFCFRWVLIQFKREFEYEDTMRLWEILLA 404
D L + + +N F+ FRW+ + +EF + +++ +W+ LL+
Sbjct: 347 DEELWRHLEVTTKINPQFYAFRWITLLLTQEFNFVESLHIWDTLLS 392
>AT4G13730.2 | Symbols: | RabGAP/TBC domain-containing protein |
chr4:7970295-7973897 FORWARD
Length = 408
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 127/286 (44%), Gaps = 65/286 (22%)
Query: 181 RVTDSEAFRKRIFYGGL--DHKLRIEVWGLLLGYYPYESTYAEREYLKTVKKSEYETIKN 238
+V D + RK I GL D +R VW LLL Y + + E K K+S+Y+ K
Sbjct: 110 KVIDLKELRK-IASQGLPDDAGIRSIVWKLLLDYLSPDRSLWSSELAK--KRSQYKQFKE 166
Query: 239 QWQSISSAQARRFTK----------------------------------------FRERK 258
+ S R+ K F++ +
Sbjct: 167 ELLMNPSEVTRKMDKSKGGDSNDPKIESPGALSRSEITHEDHPLSLGTTSLWNNFFKDTE 226
Query: 259 GL--IEKDVVRTDRSLNFYEGDD---NPNVNVLRDILLTYSFYNFDLGYCQGMSDLLSPI 313
L IE+DV+RT ++F+ GD N + L++IL ++ N + Y QGM+++L+PI
Sbjct: 227 VLEQIERDVMRTHPDMHFFSGDSAVAKSNQDALKNILTIFAKLNPGIRYVQGMNEILAPI 286
Query: 314 LFVMGD----------ESEAFWCFVALMERLGPNFNRDQN----GMHSQLFALSKLVELL 359
++ + ES+AF+CFV LM NF + + G+ + LS L++
Sbjct: 287 FYIFKNDPDKGNAAYAESDAFFCFVELMSGFRDNFCQQLDNSVVGIRYTITRLSLLLKHH 346
Query: 360 DSPLHNYFKQRDCLN-YFFCFRWVLIQFKREFEYEDTMRLWEILLA 404
D L + + +N F+ FRW+ + +EF + +++ +W+ LL+
Sbjct: 347 DEELWRHLEVTTKINPQFYAFRWITLLLTQEFNFVESLHIWDTLLS 392
>AT1G04830.1 | Symbols: | RabGAP/TBC domain-containing protein |
chr1:1359086-1361843 REVERSE
Length = 448
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 122/264 (46%), Gaps = 62/264 (23%)
Query: 201 LRIEVWGLLLGYYPYESTYAEREYLKTVKKSEYETIKNQ---------WQSISS------ 245
+R VW LLLGY P E + E + K+S+Y+ K++ W+ + S
Sbjct: 127 IRSTVWKLLLGYLPPERSLWSTELKQ--KRSQYKHYKDELLTSPSEITWKMVRSKGFDNY 184
Query: 246 ----------AQARRF---------------TKFRERKGL--IEKDVVRTDRSLNFYEGD 278
A++R T F++ + + I++DV RT + F+ G+
Sbjct: 185 DLKSESRCMLARSRITDEDHPLSLGKASIWNTYFQDTETIEQIDRDVKRTHPDIPFFSGE 244
Query: 279 DN---PNVNVLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMGD----------ESEAFW 325
+ N +++ILL ++ N + Y QGM+++L+PI +V + E++AF+
Sbjct: 245 SSFARSNQESMKNILLVFAKLNQGIRYVQGMNEILAPIFYVFRNDPDEDSSSHAEADAFF 304
Query: 326 CFVALMERL----GPNFNRDQNGMHSQLFALSKLVELLDSPLHNYFKQRDCLN-YFFCFR 380
CFV L+ + G+ S + LS+LV D L + + +N F+ FR
Sbjct: 305 CFVELLSGFRDFYCQQLDNSVVGIRSAITRLSQLVRKHDEELWRHLEITTKVNPQFYAFR 364
Query: 381 WVLIQFKREFEYEDTMRLWEILLA 404
W+ + +EF + D++ +W+ LL+
Sbjct: 365 WITLLLTQEFSFFDSLHIWDALLS 388
>AT2G30710.1 | Symbols: | RabGAP/TBC domain-containing protein |
chr2:13093224-13096068 REVERSE
Length = 440
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 105/240 (43%), Gaps = 33/240 (13%)
Query: 190 KRIFYGGLDHKLRIEVWGLLLGYYPYESTYAEREYLKTVKKSEYETIKNQWQSISSAQAR 249
+ + + G+ H +R +VW LLLGY P S RE + K+ EY Q+ + ++
Sbjct: 137 RELAWNGVPHYMRPDVWRLLLGYAPPNSD--RREAVLRRKRLEYLESVGQFYDLPDSERS 194
Query: 250 --RFTKFRERKGLIEKDVVRTDRSLNFYEGDDNPNVNVLRDILLTYSFYNFDLGYCQGMS 307
R+ I D RT ++F++ + L IL T++ + GY QG++
Sbjct: 195 DDEINMLRQ----IAVDCPRTVPDVSFFQQEQVQKS--LERILYTWAIRHPASGYVQGIN 248
Query: 308 DLLSPILFV--------------MGD---------ESEAFWCFVALMERLGPNFNRDQNG 344
DL++P L + M D E++ +WC L++ + ++ Q G
Sbjct: 249 DLVTPFLVIFLSEYLDGGVDSWSMDDLSAEKVSDVEADCYWCLTKLLDGMQDHYTFAQPG 308
Query: 345 MHSQLFALSKLVELLDSPLHNYFKQRDCLNYFFCFRWVLIQFKREFEYEDTMRLWEILLA 404
+ +F L +LV +D P+ + ++ F FRW RE + RLW+ LA
Sbjct: 309 IQRLVFKLKELVRRIDEPVSRHMEEHGLEFLQFAFRWYNCLLIREIPFNLINRLWDTYLA 368
>AT3G02460.2 | Symbols: | plant adhesion molecule, putative |
chr3:506117-508099 FORWARD
Length = 333
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 6/149 (4%)
Query: 261 IEKDVVRTDRSLNFYEGDDNPNVNVLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMGDE 320
I +D+ RT S F++ P L ++L YS Y+ D+GY QGM + +L M +E
Sbjct: 130 IIRDISRTFPSHVFFQKRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFIAGLLLLYMSEE 189
Query: 321 SEAFWCFVALMERL--GPNFNRDQNGM---HSQLFALSKLVELLDSPLHNYFKQRDCLNY 375
+AFW VAL++ P G+ LF L LV+ L L +F Q
Sbjct: 190 -DAFWLLVALLKGAVHAPMEGLYHAGLPLVQQYLFQLESLVKELIPKLGEHFTQEMINPS 248
Query: 376 FFCFRWVLIQFKREFEYEDTMRLWEILLA 404
+ +W + F F + +R+W++ L+
Sbjct: 249 MYASQWFITVFSYSFPFPLALRIWDVFLS 277
>AT3G02460.1 | Symbols: | plant adhesion molecule, putative |
chr3:506117-508099 FORWARD
Length = 353
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 6/149 (4%)
Query: 261 IEKDVVRTDRSLNFYEGDDNPNVNVLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMGDE 320
I +D+ RT S F++ P L ++L YS Y+ D+GY QGM + +L M +E
Sbjct: 130 IIRDISRTFPSHVFFQKRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFIAGLLLLYMSEE 189
Query: 321 SEAFWCFVALMERL--GPNFNRDQNGM---HSQLFALSKLVELLDSPLHNYFKQRDCLNY 375
+AFW VAL++ P G+ LF L LV+ L L +F Q
Sbjct: 190 -DAFWLLVALLKGAVHAPMEGLYHAGLPLVQQYLFQLESLVKELIPKLGEHFTQEMINPS 248
Query: 376 FFCFRWVLIQFKREFEYEDTMRLWEILLA 404
+ +W + F F + +R+W++ L+
Sbjct: 249 MYASQWFITVFSYSFPFPLALRIWDVFLS 277
>AT5G15930.1 | Symbols: PAM1 | PAM1 (PLANT ADHESION MOLECULE 1); RAB
GTPase activator | chr5:5200332-5202253 FORWARD
Length = 356
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 6/149 (4%)
Query: 261 IEKDVVRTDRSLNFYEGDDNPNVNVLRDILLTYSFYNFDLGYCQGMSDLLSPILFVMGDE 320
I +D+ RT S F++ P L ++L YS Y+ D+GY QGM + +L M +E
Sbjct: 127 IIRDISRTFPSHVFFQKRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFIAGLLLLYMSEE 186
Query: 321 SEAFWCFVALMERL--GPNFNRDQNGM---HSQLFALSKLVELLDSPLHNYFKQRDCLNY 375
+AFW VAL++ P Q G+ L +LV L L +F Q
Sbjct: 187 -DAFWLLVALLKGAVHSPIEGLYQAGLPLVQQYLLQFDQLVRELMPKLGEHFTQEMINPS 245
Query: 376 FFCFRWVLIQFKREFEYEDTMRLWEILLA 404
+ +W + F + +R+W++ LA
Sbjct: 246 MYASQWFITVFSYSLPFHSALRIWDVFLA 274
>AT3G07890.2 | Symbols: | RabGAP/TBC domain-containing protein |
chr3:2516645-2518790 REVERSE
Length = 400
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 92/219 (42%), Gaps = 31/219 (14%)
Query: 190 KRIFYGGLDHKLRIEVWGLLLGYYPYESTYAEREYLKTVKKSEYETIKNQWQSISSAQAR 249
KR+ G+ LR +VW L G +ST E Y K E + + R
Sbjct: 110 KRLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYSDLTKAVE---------GMVTPATR 160
Query: 250 RFTKFRERKGLIEKDVVRTDRSLNFYEGD---DNPNVNV-LRDILLTYSFYNFDLGYCQG 305
+ I+ D+ RT + G D P + LR +L+ YSF + D+GYCQG
Sbjct: 161 Q----------IDHDLPRT------FPGHPWLDTPEGHAALRRVLVGYSFRDSDVGYCQG 204
Query: 306 MSDLLSPILFVMGDESEAFWCFVALMERLGPN--FNRDQNGMHSQLFALSKLVELLDSPL 363
++ + + +L VM E +AFW L+E + + + +G H + L+ S +
Sbjct: 205 LNYVAALLLLVMKTEEDAFWMLAVLLENVLVRDCYTTNLSGCHVEQRVFKDLLAQKCSRI 264
Query: 364 HNYFKQRDCLNYFFCFRWVLIQFKREFEYEDTMRLWEIL 402
+ + W L F + E T+R+W++L
Sbjct: 265 ATHLEDMGFDVSLVATEWFLCLFSKSLPSETTLRVWDVL 303
>AT3G07890.1 | Symbols: | RabGAP/TBC domain-containing protein |
chr3:2516645-2518790 REVERSE
Length = 400
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 92/219 (42%), Gaps = 31/219 (14%)
Query: 190 KRIFYGGLDHKLRIEVWGLLLGYYPYESTYAEREYLKTVKKSEYETIKNQWQSISSAQAR 249
KR+ G+ LR +VW L G +ST E Y K E + + R
Sbjct: 110 KRLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYSDLTKAVE---------GMVTPATR 160
Query: 250 RFTKFRERKGLIEKDVVRTDRSLNFYEGD---DNPNVNV-LRDILLTYSFYNFDLGYCQG 305
+ I+ D+ RT + G D P + LR +L+ YSF + D+GYCQG
Sbjct: 161 Q----------IDHDLPRT------FPGHPWLDTPEGHAALRRVLVGYSFRDSDVGYCQG 204
Query: 306 MSDLLSPILFVMGDESEAFWCFVALMERLGPN--FNRDQNGMHSQLFALSKLVELLDSPL 363
++ + + +L VM E +AFW L+E + + + +G H + L+ S +
Sbjct: 205 LNYVAALLLLVMKTEEDAFWMLAVLLENVLVRDCYTTNLSGCHVEQRVFKDLLAQKCSRI 264
Query: 364 HNYFKQRDCLNYFFCFRWVLIQFKREFEYEDTMRLWEIL 402
+ + W L F + E T+R+W++L
Sbjct: 265 ATHLEDMGFDVSLVATEWFLCLFSKSLPSETTLRVWDVL 303
>AT3G55020.1 | Symbols: | RabGAP/TBC domain-containing protein |
chr3:20400255-20405690 REVERSE
Length = 777
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 102/226 (45%), Gaps = 30/226 (13%)
Query: 192 IFYGGLDHKLRIEVWGLLLGYYP------YESTYAEREYLKTVKKSEYETIKNQWQSISS 245
+ GG+ LR E+W +G Y++ A + T+++ + + + ++ S S
Sbjct: 240 LIRGGVPMALRGELWQAFVGVRKRRCKDYYQNLLAADGSVNTIEQEDMQHVDDKGSSTES 299
Query: 246 AQARRFTKFRERKGLIEKDVVRTDRSLNFYEGDDNPNVNVLRDILLTYSFYNFDLGYCQG 305
+ KG IEKD+ RT + D+ N LR +L Y+ +N +GYCQ
Sbjct: 300 -----IAVVEKWKGQIEKDLPRT---FPGHPALDDDGRNALRRLLTAYARHNPSVGYCQA 351
Query: 306 MSDLLSPILFVMGDESEAFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDSPL-- 363
M+ + +L +M +E+ AFW + L++ NG +S+ S++ +L+ L
Sbjct: 352 MNFFAALLLLLMPEEN-AFWALIGLIDDYF-------NGYYSEEMIESQVDQLVLEELVR 403
Query: 364 HNYFKQRDCLNY------FFCFRWVLIQFKREFEYEDTMRLWEILL 403
+ K L+Y + W L F +E +R+W++LL
Sbjct: 404 ERFPKLVHHLDYLGVQVAWVTGPWFLSIFMNMLPWESVLRVWDVLL 449
>AT2G37290.1 | Symbols: | RabGAP/TBC domain-containing protein |
chr2:15664014-15668414 REVERSE
Length = 882
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 93/214 (43%), Gaps = 30/214 (14%)
Query: 196 GLDHKLRIEVWGLLLGYYPYESTYAEREYLKTVKKSEYETIKNQWQSISSAQARRFTKFR 255
G+ LR EVW +G ++ ER Y + + I N ++ S Q R
Sbjct: 317 GVPKDLRGEVWQAFVGV---KARRVERYYQDLLAQ-----ITNSDENSSDVQ-------R 361
Query: 256 ERKGLIEKDVVRTDRSLNFYEGDDNPNVN---VLRDILLTYSFYNFDLGYCQGMSDLLSP 312
+ K IEKD+ RT + G N N LR ILL Y+ +N +GYCQ M+
Sbjct: 362 KWKKQIEKDIPRT------FPGHPALNENGRDSLRRILLAYACHNPSVGYCQAMNFFAGL 415
Query: 313 ILFVMGDESEAFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDSPLHNYFKQRDC 372
+L +M +E+ AFW V +++ + ++ + SQ+ L EL+ D
Sbjct: 416 LLLLMPEEN-AFWTLVGIIDDYFDGYYTEE-MIESQVDQLV-FEELMRERFPKLVNHLDY 472
Query: 373 LNY---FFCFRWVLIQFKREFEYEDTMRLWEILL 403
L + W L F +E +R+W++LL
Sbjct: 473 LGVQVAWISGPWFLSIFVNIIPWECVLRMWDVLL 506
>AT2G39280.1 | Symbols: | RAB GTPase activator |
chr2:16409079-16413728 REVERSE
Length = 749
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 92/221 (41%), Gaps = 20/221 (9%)
Query: 192 IFYGGLDHKLRIEVWGLLLGYYP------YESTYAEREYLKTVKKSEYETIKNQWQSISS 245
+ +GG LR E+W G Y++ A + E E +++ + SS
Sbjct: 227 LIHGGAPMALRGELWQAFAGVKKRRVKNYYQNLLAADSLGNDI---EQELMQHTDEKGSS 283
Query: 246 AQARRFTKFRERKGLIEKDVVRTDRSLNFYEGDDNPNVNVLRDILLTYSFYNFDLGYCQG 305
+ + KG IEKD+ RT + D+ N LR +L Y+ +N +GYCQ
Sbjct: 284 TDP--LSVVEKWKGQIEKDLPRT---FPGHPALDDDFRNALRRLLTAYARHNPSVGYCQA 338
Query: 306 MSDLLSPILFVMGDESEAFWCFVALMERLGPNFNRDQNGMHSQLFALSKLVELLDSPLHN 365
M+ + +L +M +E+ AFW +++ ++ ++ M L ELL
Sbjct: 339 MNFFAALLLLLMPEEN-AFWSLTGIIDDYFHDYYSEE--MLESQVDQRVLEELLRERFPK 395
Query: 366 YFKQRDCLNY-FFCFR--WVLIQFKREFEYEDTMRLWEILL 403
D L C W L F +E +R+W++LL
Sbjct: 396 LVHHLDYLGVQVACVTGPWFLTIFINMLPWESVLRVWDVLL 436