Miyakogusa Predicted Gene

chr4.CM0003.160.nc

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr4.CM0003.160.nc + phase: 0 
         (835 letters)

Database: TAIR8_pep 
           32,825 sequences; 13,166,001 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G35430.1 | Symbols:  | binding | chr5:13679307-13682965 FORWARD    677   0.0  

>AT5G35430.1 | Symbols:  | binding | chr5:13679307-13682965 FORWARD
          Length = 786

 Score =  677 bits (1746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/830 (46%), Positives = 522/830 (62%), Gaps = 101/830 (12%)

Query: 26  DDGIFTVTVALAKDAALHFQSGKFAECAEVLHQLLQKKQDDPKVLHNIAIAEFFRDGCSD 85
           D  + +VT  LAK A  +FQSGKF EC +VL QL Q K +DPKVLHN+AIAE+F+DGCS+
Sbjct: 21  DAAVLSVTSTLAKTALSYFQSGKFEECIDVLIQLDQMKHNDPKVLHNMAIAEYFKDGCSN 80

Query: 86  PKKLLEVIKGIKRTNDEHTQTSGEQGESLNNAGSKDVSGSKGSNPSALQFSGANSTTTIH 145
            +KL+EV+K +K+           Q E L++A    V   + +NP      G N   ++ 
Sbjct: 81  SEKLVEVLKRVKK-----------QSEQLSSAAKDQV---EAANP------GTN--VSVS 118

Query: 146 KDEFDSSVAMLNTAIIWFHLHDYAKTLSVLEPLFQNIEPVDED----------------- 188
           KD FD +V  LN A+ WFHL+ Y+K+ S+LEPLFQNI+ +DE                  
Sbjct: 119 KDHFDRTVTTLNIAVTWFHLYHYSKSFSILEPLFQNIQRLDETIALQICFLLLDISLACR 178

Query: 189 -------VLTYLEKAFGVSSVSQGDSGNTAQQQSANLITKSAPVXXXXXXXXXXXXXXXX 241
                  V  Y++KAFGV   S  ++G+T Q  S  +   S+ +                
Sbjct: 179 DAVNFLAVFDYMDKAFGVGFGSHEENGSTMQLSSNQVSRTSSLLSSSVAS---------- 228

Query: 242 XXNASENHLSRAES---EDTLDYEAMIVDMGGQSLARAMG--PSSNDISRASVDRFSTVD 296
             +   + L+ AES   E+TLDYE ++ ++  +   + +G  P++N +   S   FST D
Sbjct: 229 --DTLRSDLTAAESSLCEETLDYENVLAEIEAEKRMKLVGHIPANNLLKTLSERSFSTAD 286

Query: 297 LKLKLQLYKVQFLLLTRNLKLAKREVKLAMNIARGRDSPMALLLKSELEYARGNHRKAIK 356
           LKL+LQLYKV+FLLLTRNLKLAKREVK AMNIA+ RDS MALLLKS+LEYA GNH KA+K
Sbjct: 287 LKLELQLYKVRFLLLTRNLKLAKREVKHAMNIAQKRDSSMALLLKSQLEYAHGNHPKAMK 346

Query: 357 LLMASSNRTDTVFSSIFNNNLGCIYYQLGKYQTSSLFFSKALTNCSSLRKDQPLKLATFS 416
           LL+ S    +   S IFNNNLGCI+YQLG YQ SS+ F KAL +CSSLR  +P K  + S
Sbjct: 347 LLLVSGIHKEAGTSGIFNNNLGCIFYQLGCYQASSVLFLKALRSCSSLRNGKPAKTFSLS 406

Query: 417 QDNSLLIMYNCGVQYLACGKPVLAARCFQKASLVFYKQPLLWLRLSECCLMALEKGLIKS 476
           Q+ S+LI YNCG+ YLA GKP+LAA+CFQKAS VF +QPL+WLRL+ECC+MAL+KGL++ 
Sbjct: 407 QNKSMLITYNCGLLYLASGKPLLAAQCFQKASHVFRRQPLIWLRLAECCMMALQKGLLEG 466

Query: 477 NRVPSENLEVGVCVVGMGKWRQLVVQDQIPGKGNVDSSEGNDCFSSENGRQKLSMSLARQ 536
                +  E+ V V+G G  RQL++++     G V+        +  N   KLS+ LAR 
Sbjct: 467 GNSSLDRSEIRVHVIGKGNRRQLMIEEN----GYVE-------LAGSNQLSKLSLPLARV 515

Query: 537 CLLNALHLLDSYSTNCLKSGLPSNSSVEEIDPNEVXXXXXXXXXXXHGVDSKAFSVAVGL 596
           CL N ++LL+   +N  KS L S  SV                    G++      +   
Sbjct: 516 CLSNGIYLLNESLSNDSKSDLGSILSV--------------------GMNETKEGSSSDH 555

Query: 597 GQVNSNGDVKEQKGGTSQELIQNSLSYYEDVRRRENQLIKQAVLANLAFVELELDNPVKA 656
            + N+N D KE KGG SQE+IQNSLS +ED+R RE QL++QA+ AN+A+VELEL NP+KA
Sbjct: 556 EEGNTNTDSKEAKGGMSQEIIQNSLSAFEDIRNREKQLMRQALFANMAYVELELANPIKA 615

Query: 657 LSVAKRLLELPECSRIYIFLGRVYAAEALCLLNRPKEAAELLSIYLSGGNDVDLPFSQED 716
           LS A  LL+L +CS+IY+FLG +YAAEALCLLNRP EA   LS YL G +D  LP++QED
Sbjct: 616 LSAATSLLQLADCSKIYVFLGHIYAAEALCLLNRPIEAGAHLSAYLLGQDDFKLPYAQED 675

Query: 717 CEKWQAERTAEFEEVNGGSTATNNSSFEDTRRIVFLKPEEARATIYANFAALSAMQGEFE 776
            ++W    +++ EE    ST        +TR  VFLKPEEAR  ++A+ AAL A QG  +
Sbjct: 676 FDQWWKHTSSDCEETLDPSTG-------NTRDSVFLKPEEARGALFADLAALLATQGHHD 728

Query: 777 KANVLVTQALSILPNSPEAILTAVYVDLLVGKPQEALAKLKSCSRIRFLP 826
           +A  L+T AL++LPN+ +A +TAVY+DL++G+ Q+ALA+LK C+ + F+P
Sbjct: 729 QAKSLITHALTLLPNNVQATVTAVYIDLMLGRSQDALARLKQCTHVSFVP 778