Miyakogusa Predicted Gene
- chr3.LjT23O13.80.nd
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr3.LjT23O13.80.nd - phase: 0 /partial
(364 letters)
Database: TAIR8_pep
32,825 sequences; 13,166,001 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G15330.1 | Symbols: | CBS domain-containing protein | chr1:5... 396 e-110
AT1G80090.1 | Symbols: | CBS domain-containing protein | chr1:3... 384 e-107
AT1G69800.2 | Symbols: | CBS domain-containing protein | chr1:2... 45 8e-05
AT4G27460.1 | Symbols: | CBS domain-containing protein | chr4:1... 45 8e-05
AT1G69800.1 | Symbols: | CBS domain-containing protein | chr1:2... 45 9e-05
AT5G53750.1 | Symbols: | similar to CBS domain-containing prote... 44 1e-04
>AT1G15330.1 | Symbols: | CBS domain-containing protein |
chr1:5274363-5275494 FORWARD
Length = 352
Score = 396 bits (1017), Expect = e-110, Method: Compositional matrix adjust.
Identities = 201/356 (56%), Positives = 256/356 (71%), Gaps = 27/356 (7%)
Query: 3 DLMVDQKKRLVEVPYTASLAHTMNTLVANKXXXXXXXXXXGQWIGAGGSMIVESDKQTGA 62
DL V + +RLVEVPYTA+L+H MNTLVAN G WIGAGGSMI+ESDKQTG
Sbjct: 20 DLTV-RNRRLVEVPYTATLSHAMNTLVANSISALPVAAPPGHWIGAGGSMIMESDKQTGV 78
Query: 63 VRKHYIGMVTMLDIVAHIAXXXXXXXXXXXXXXXXXXXQKMCVPVSSIIGHSFEGLSLWT 122
VRKHYIG++TMLDI+AHIA +KM VSSIIGH EGLSLWT
Sbjct: 79 VRKHYIGILTMLDILAHIAGEDSNLSDLD---------RKMSSQVSSIIGHCLEGLSLWT 129
Query: 123 LNPNTSLLDCMEVFSKGVHRAMVPIDSHME--NVSTGVELVESASGYQMLTQMDVLRFLK 180
LNPNTS+L+CMEVFSKG+HRA+VP++S +E N GVEL+ESAS Y+MLTQMD+LRFLK
Sbjct: 130 LNPNTSVLECMEVFSKGIHRALVPVESSIESNNTIAGVELIESASAYKMLTQMDLLRFLK 189
Query: 181 DH-AGELQSILSCSVQDLGANTERIYAITDKTKLVDAIKCLKAAMLNAVPIVEASDLGED 239
DH +L+++LS S+ DLGA + +YAIT++T + +AI +K A+LNAVPIV A D+ ++
Sbjct: 190 DHHFDDLKTVLSRSISDLGAVNDSVYAITERTTVSNAINVMKGALLNAVPIVHAPDIAQE 249
Query: 240 DHKQHINGRCRKLIGTFSATDLRGCYLATLKSWLGISALAFTEEIATSPLFTASDTQNTG 299
DH Q +NGR RK+IGTFSATDL+GC L L++WL ++AL FTE+ T
Sbjct: 250 DHLQLVNGRHRKVIGTFSATDLKGCRLPELQTWLPLTALEFTEK--------------TS 295
Query: 300 TSKRELVTCHAESPLSEVIDKALTNHVHRVWVVDQEGLLMGVVSLTDVIRVMRQSM 355
+RE+V+C ES + E I+K +T VHRVWV+DQ+GLL GVVSLTD+IR +R ++
Sbjct: 296 GKEREVVSCGVESTMEEAIEKVVTRGVHRVWVMDQQGLLQGVVSLTDIIRSLRSTL 351
>AT1G80090.1 | Symbols: | CBS domain-containing protein |
chr1:30134997-30136748 FORWARD
Length = 402
Score = 384 bits (985), Expect = e-107, Method: Compositional matrix adjust.
Identities = 201/369 (54%), Positives = 257/369 (69%), Gaps = 24/369 (6%)
Query: 1 VGDLMVDQKKRLVEVPYTASLAHTMNTL-------VANKXXXXXXXXXXGQWIGAGGSMI 53
V DLM+D K+RLVEVP A+L +NT+ VAN+ GQW+GAGGSMI
Sbjct: 50 VKDLMID-KRRLVEVPDNATLGDALNTMTILGIKPVANRVRAVPVAAKPGQWLGAGGSMI 108
Query: 54 VESDKQTGAVRKHYIGMVTMLDIVAHIAXXXXXXXXXXXXXXXXXXXQKMCVPVSSIIGH 113
VE DKQ+G+ RK YIGMVTMLD+VAHIA +KM PVSSIIGH
Sbjct: 109 VELDKQSGSARKQYIGMVTMLDVVAHIAGDDGESGLD----------KKMAAPVSSIIGH 158
Query: 114 SFEGLSLWTLNPNTSLLDCMEVFSKGVHRAMVPIDSHMENVSTGVELVESASGYQMLTQM 173
EGLSLW+LNPNTS++DCME+ SKG+HR +VP+DS+ EN+ TG ELVESAS Y ML+QM
Sbjct: 159 CPEGLSLWSLNPNTSIMDCMEMLSKGIHRVLVPLDSNTENI-TGPELVESASAYAMLSQM 217
Query: 174 DVLRFLKDHAGELQSILSCSVQDLGANTERIYAITDKTKLVDAIKCLKAAMLNAVPIVEA 233
D++ F D + +L ILS +V DL A + A+T + ++ DAI+C+ AMLNAVPIVEA
Sbjct: 218 DLISFFFDQSSQLHGILSHTVTDLSAIHNTVLALTSQARVKDAIQCMSIAMLNAVPIVEA 277
Query: 234 SDLGEDDHKQHINGRCRKLIGTFSATDLRGCYLATLKSWLGISALAFTEEIATSPLFTAS 293
S GE DHKQ ++G+ R+++GTFSA+DL+GC+LATL+SWL ++AL F E+I + LFTA+
Sbjct: 278 SGEGE-DHKQLVDGKNRRVVGTFSASDLKGCHLATLRSWLPLNALEFVEKIPRTLLFTAA 336
Query: 294 DTQNTGTSKRELVTCHAESPLSEVIDKALTNHVHRVWVVDQEGLLMGVVSLTDVIRVMRQ 353
T T RELVTCH S L++VI T VHRVWVVDQ G L G+VSLTD+I V+R
Sbjct: 337 ----TSTPGRELVTCHVTSTLAQVIHMVTTKRVHRVWVVDQNGGLQGLVSLTDIIAVVRS 392
Query: 354 SMLSQLDDM 362
++LS D+
Sbjct: 393 ALLSGAPDL 401
>AT1G69800.2 | Symbols: | CBS domain-containing protein |
chr1:26278079-26279988 REVERSE
Length = 476
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 106/246 (43%), Gaps = 42/246 (17%)
Query: 111 IGHSFEGLSLWTLNPNTSLLDCMEVFSKGVHRAMVPIDSHMENVSTGVELVESASGYQML 170
I SF ++ +S+L M + SK R VP+ + TG +++ +
Sbjct: 240 ILKSFRWAPFLPVSTESSMLSVMLLLSKYRLRN-VPV------IKTGEPDIKN-----YV 287
Query: 171 TQMDVLRFLKDHAGE--LQSILSCSVQDLG---ANTERIYAITDKTKLVDAIKCLKAAML 225
TQ V+ L+ G I + + DLG + + +I + +++A K ++ +
Sbjct: 288 TQSAVVHGLEGCKGRDWFDHISALPISDLGLPFMSPNEVISIESEELILEAFKRMRDNNI 347
Query: 226 NAVPIVEASDLGEDDHKQHINGRCRKLIGTFSATDLRGCYLAT--LKSWLGISALAFTEE 283
+P+VE G +K++G S D+R L ++ ++ +F +
Sbjct: 348 GGLPVVE--------------GLNKKIVGNISMRDIRYLLLQPEVFSNFRQLTVKSFATK 393
Query: 284 IATSPLFTASDTQNTGTSKRELVTCHAESPLSEVIDKALTNHVHRVWV-VDQEGLLMGVV 342
IAT+ + G + +TC +S L VI+ + VHRV+V E L GV+
Sbjct: 394 IATA-------GEEYGLAI-PAITCRPDSTLGSVINSLASRSVHRVYVAAGDENELYGVI 445
Query: 343 SLTDVI 348
+L DVI
Sbjct: 446 TLRDVI 451
>AT4G27460.1 | Symbols: | CBS domain-containing protein |
chr4:13732945-13734269 FORWARD
Length = 391
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 287 SPLFTASDTQNTGTSKR-----ELVTCHAESPLSEVIDKALTNHVHRVWVVDQEGLLMGV 341
+P+ T S ++ +S R E + C+ +S L V+ +A+ + V+ WVV+++G +G+
Sbjct: 314 APVRTTSYGRSMSSSARMARKSEAIVCNPKSSLMAVMIQAVAHRVNYAWVVEKDGCFVGM 373
Query: 342 VSLTDVIRVMRQ 353
V+ D+++V R+
Sbjct: 374 VTFVDILKVFRK 385
>AT1G69800.1 | Symbols: | CBS domain-containing protein |
chr1:26278079-26279768 REVERSE
Length = 447
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 106/246 (43%), Gaps = 42/246 (17%)
Query: 111 IGHSFEGLSLWTLNPNTSLLDCMEVFSKGVHRAMVPIDSHMENVSTGVELVESASGYQML 170
I SF ++ +S+L M + SK R VP+ + TG +++ +
Sbjct: 211 ILKSFRWAPFLPVSTESSMLSVMLLLSKYRLRN-VPV------IKTGEPDIKN-----YV 258
Query: 171 TQMDVLRFLKDHAGE--LQSILSCSVQDLG---ANTERIYAITDKTKLVDAIKCLKAAML 225
TQ V+ L+ G I + + DLG + + +I + +++A K ++ +
Sbjct: 259 TQSAVVHGLEGCKGRDWFDHISALPISDLGLPFMSPNEVISIESEELILEAFKRMRDNNI 318
Query: 226 NAVPIVEASDLGEDDHKQHINGRCRKLIGTFSATDLRGCYLAT--LKSWLGISALAFTEE 283
+P+VE G +K++G S D+R L ++ ++ +F +
Sbjct: 319 GGLPVVE--------------GLNKKIVGNISMRDIRYLLLQPEVFSNFRQLTVKSFATK 364
Query: 284 IATSPLFTASDTQNTGTSKRELVTCHAESPLSEVIDKALTNHVHRVWV-VDQEGLLMGVV 342
IAT+ + G + +TC +S L VI+ + VHRV+V E L GV+
Sbjct: 365 IATA-------GEEYGLAI-PAITCRPDSTLGSVINSLASRSVHRVYVAAGDENELYGVI 416
Query: 343 SLTDVI 348
+L DVI
Sbjct: 417 TLRDVI 422
>AT5G53750.1 | Symbols: | similar to CBS domain-containing protein
[Arabidopsis thaliana] (TAIR:AT4G27460.1); similar to
unnamed protein product [Vitis vinifera]
(GB:CAO16914.1); contains InterPro domain Cystathionine
beta-synthase, core (InterPro:IPR000644) |
chr5:21834642-21835949 FORWARD
Length = 408
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 34/48 (70%)
Query: 306 VTCHAESPLSEVIDKALTNHVHRVWVVDQEGLLMGVVSLTDVIRVMRQ 353
+ C+ +S L V+ +A+ + V VWV+D++G L+G+V+ D++++ R+
Sbjct: 355 IVCNRKSSLMAVMIQAIAHRVSYVWVIDEDGCLIGMVTFVDILKLFRE 402