Miyakogusa Predicted Gene

chr3.CM0996.130.nd
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr3.CM0996.130.nd - phase: 0 
         (78 letters)

Database: TAIR8_pep 
           32,825 sequences; 13,166,001 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G21820.1 | Symbols:  | similar to hypothetical protein MtrDRA...   123   2e-29

>AT2G21820.1 | Symbols:  | similar to hypothetical protein
          MtrDRAFT_AC155884g16v2 [Medicago truncatula]
          (GB:ABN08202.1) | chr2:9310063-9310299 REVERSE
          Length = 78

 Score =  123 bits (308), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/78 (78%), Positives = 70/78 (89%)

Query: 1  MSGAQGAQPKESLTATTYESVEGGANRTRTDLRSKEDQGSIQVDKLQEKVNDPAGKGGPV 60
          MSGAQGA+P +S TATTYESVEGG N+T+ D+RSKED+G IQVDKLQ+KV+D AG GGPV
Sbjct: 1  MSGAQGAEPMDSRTATTYESVEGGQNKTKLDIRSKEDEGGIQVDKLQDKVSDAAGLGGPV 60

Query: 61 FGAGKDENKQDLGVTGTG 78
          FGAGKD+ KQDLGVTGTG
Sbjct: 61 FGAGKDDKKQDLGVTGTG 78