Miyakogusa Predicted Gene

chr3.CM0792.150.nd
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr3.CM0792.150.nd - phase: 0 
         (868 letters)

Database: TAIR8_pep 
           32,825 sequences; 13,166,001 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G29210.1 | Symbols:  | splicing factor PWI domain-containing ...   253   4e-67

>AT2G29210.1 | Symbols:  | splicing factor PWI domain-containing
           protein | chr2:12565233-12569245 FORWARD
          Length = 878

 Score =  253 bits (646), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 126/206 (61%), Positives = 144/206 (69%), Gaps = 9/206 (4%)

Query: 1   MSGGFFRGTSADQDTRFSNKQAKLMKSQKFAPELEHLVDMTKVNMEVMKPWITRRVTELL 60
           MSGGFFRGTSA+QDTRFSNKQAKLMKSQKFAPELE+LVD+TKV M+VMKPWI  RVTELL
Sbjct: 1   MSGGFFRGTSAEQDTRFSNKQAKLMKSQKFAPELENLVDITKVKMDVMKPWIATRVTELL 60

Query: 61  GFEDEVLINFIHGLLDAKEVNGKEIQIQITGFMEKNTVKFMKELWTLLLSAQKNASGVPQ 120
           G EDEVLINFI+GLLD K VNGKEIQI +TGFMEKNT KFMKELWTLLLSAQ N SGVPQ
Sbjct: 61  GIEDEVLINFIYGLLDGKVVNGKEIQITLTGFMEKNTGKFMKELWTLLLSAQNNPSGVPQ 120

Query: 121 QFLDAXXXXXXXXXXXXXRIASEIQXXXXXXXXXXXXXXXXXLDGGLDAKDNNTASDPTL 180
           QFLDA               A+EI                  +D G++ K+ N      +
Sbjct: 121 QFLDARAAETKKKQEE----ANEIMKKREGDKKNIEHDILRKIDSGVEHKETN-----GM 171

Query: 181 KHRDSGHYVQDGKEADKRNGVRARNR 206
             + S    +DG+ AD++NGV+ R R
Sbjct: 172 DAKPSRDRPEDGRRADEKNGVKERRR 197



 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 35/47 (74%), Gaps = 1/47 (2%)

Query: 822 ISDDEEAERMDDHPSNNEETQVDPKKLEIELRNKALESLKAKRGLNN 868
           +SD  E E ++  P   +  + DPK+LEIELRNKALESLKAK+G+++
Sbjct: 833 LSDTSEGE-VEARPKIKKGEESDPKRLEIELRNKALESLKAKKGISH 878