Miyakogusa Predicted Gene
- chr3.CM0724.170.nd
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr3.CM0724.170.nd + phase: 0 /partial
(361 letters)
Database: TAIR8_pep
32,825 sequences; 13,166,001 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G13990.1 | Symbols: | similar to unknown protein [Arabidopsi... 171 5e-43
AT3G13990.2 | Symbols: | similar to unknown protein [Arabidopsi... 171 5e-43
AT3G07660.1 | Symbols: | similar to unknown protein [Arabidopsi... 83 2e-16
AT3G13222.1 | Symbols: GIP1 | GIP1 (GBF-INTERACTING PROTEIN 1) |... 77 2e-14
AT1G55820.1 | Symbols: | similar to GIP1 (GBF-INTERACTING PROTE... 74 1e-13
AT4G18150.1 | Symbols: | similar to unknown protein [Arabidopsi... 72 8e-13
AT5G46380.1 | Symbols: | similar to unknown protein [Arabidopsi... 62 5e-10
AT1G29370.1 | Symbols: | kinase-related | chr1:10278066-1028301... 62 8e-10
AT1G29350.1 | Symbols: | similar to kinase-related [Arabidopsis... 62 8e-10
>AT3G13990.1 | Symbols: | similar to unknown protein [Arabidopsis
thaliana] (TAIR:AT3G07660.1); similar to unnamed protein
product [Vitis vinifera] (GB:CAO45644.1); contains
InterPro domain Protein of unknown function DUF1296
(InterPro:IPR009719) | chr3:4625715-4630390 REVERSE
Length = 848
Score = 171 bits (434), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 139/346 (40%), Positives = 177/346 (51%), Gaps = 84/346 (24%)
Query: 1 MVPASRTEGGTGTNALSAKVRKTIQSIKEIVGNHSDADIYVALKETNMDPNETTQKLLNQ 60
MV SRT G G L + +K IQSIKE+V +HSDADIY ALKE NMD NE +KL++Q
Sbjct: 1 MVTGSRTSGNRGV-GLDDEAKKMIQSIKEVVDSHSDADIYTALKEANMDANEAVEKLIHQ 59
Query: 61 DTFHEVKRRRDRKKETQNVENKVSAEPRKNVENKVSAEPQKNVENKVSAEPRKNAENKVS 120
D FHEVKR+RDRKKE + V EP N++ +P +NV ++V
Sbjct: 60 DPFHEVKRKRDRKKE-----DTVFVEP-ANIK-----KPLENVTSEV------------- 95
Query: 121 AEPWKHSENGGQGMKVHTPYERNVRKTNYSRNTLP---------------GVSREFRVVR 165
KV T E NVR+ YSRN P G ++EFRVVR
Sbjct: 96 --------------KVRTQPEHNVRRGGYSRNFFPRNAAQRNASPRNPATGSNKEFRVVR 141
Query: 166 DNRVN-QIYREVKPPSLQHSTSTIEQSTVSTSEKGS-SAHANQSSSGARNS-QAPNGPSD 222
DNR N + E+K S Q S S I + + ++ GS N++SSGA++S N P+D
Sbjct: 142 DNRSNPNVDEELKHSSAQSSGSNINKVVATVNKLGSRGGLGNRNSSGAQDSTDECNAPAD 201
Query: 223 AHTGQSKDAVSNVKKITSEEKQGVILNAAARVQPIK-PNKTHLNSSTMVSTSSAIGVYSS 281
A Q A ++P+ P L T+ ST+S +GVYSS
Sbjct: 202 ARLRQ------------------------AEIRPLHCPVNKELGGVTLPSTNSVLGVYSS 237
Query: 282 STDPVHVPSPNSRSSGVVGAIKREVGVVGVAQRQSSDNKAKQSFVP 327
S DPVHVPSP SRSS VGAIKREV G+ + S+N K VP
Sbjct: 238 SKDPVHVPSPVSRSS-PVGAIKREVRGGGLGGK-PSENVGKDPSVP 281
>AT3G13990.2 | Symbols: | similar to unknown protein [Arabidopsis
thaliana] (TAIR:AT3G07660.1); similar to unnamed protein
product [Vitis vinifera] (GB:CAO45644.1); contains
InterPro domain Protein of unknown function DUF1296
(InterPro:IPR009719) | chr3:4625715-4630390 REVERSE
Length = 847
Score = 171 bits (434), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 139/346 (40%), Positives = 177/346 (51%), Gaps = 84/346 (24%)
Query: 1 MVPASRTEGGTGTNALSAKVRKTIQSIKEIVGNHSDADIYVALKETNMDPNETTQKLLNQ 60
MV SRT G G L + +K IQSIKE+V +HSDADIY ALKE NMD NE +KL++Q
Sbjct: 1 MVTGSRTSGNRGV-GLDDEAKKMIQSIKEVVDSHSDADIYTALKEANMDANEAVEKLIHQ 59
Query: 61 DTFHEVKRRRDRKKETQNVENKVSAEPRKNVENKVSAEPQKNVENKVSAEPRKNAENKVS 120
D FHEVKR+RDRKKE + V EP N++ +P +NV ++V
Sbjct: 60 DPFHEVKRKRDRKKE-----DTVFVEP-ANIK-----KPLENVTSEV------------- 95
Query: 121 AEPWKHSENGGQGMKVHTPYERNVRKTNYSRNTLP---------------GVSREFRVVR 165
KV T E NVR+ YSRN P G ++EFRVVR
Sbjct: 96 --------------KVRTQPEHNVRRGGYSRNFFPRNAAQRNASPRNPATGSNKEFRVVR 141
Query: 166 DNRVN-QIYREVKPPSLQHSTSTIEQSTVSTSEKGS-SAHANQSSSGARNS-QAPNGPSD 222
DNR N + E+K S Q S S I + + ++ GS N++SSGA++S N P+D
Sbjct: 142 DNRSNPNVDEELKHSSAQSSGSNINKVVATVNKLGSRGGLGNRNSSGAQDSTDECNAPAD 201
Query: 223 AHTGQSKDAVSNVKKITSEEKQGVILNAAARVQPIK-PNKTHLNSSTMVSTSSAIGVYSS 281
A Q A ++P+ P L T+ ST+S +GVYSS
Sbjct: 202 ARLRQ------------------------AEIRPLHCPVNKELGGVTLPSTNSVLGVYSS 237
Query: 282 STDPVHVPSPNSRSSGVVGAIKREVGVVGVAQRQSSDNKAKQSFVP 327
S DPVHVPSP SRSS VGAIKREV G+ + S+N K VP
Sbjct: 238 SKDPVHVPSPVSRSS-PVGAIKREVRGGGLGGK-PSENVGKDPSVP 281
>AT3G07660.1 | Symbols: | similar to unknown protein [Arabidopsis
thaliana] (TAIR:AT3G13990.1); similar to unnamed
protein product [Vitis vinifera] (GB:CAO41134.1);
contains InterPro domain Protein of unknown function
DUF1296 (InterPro:IPR009719) | chr3:2445281-2450378
REVERSE
Length = 841
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/73 (56%), Positives = 54/73 (73%), Gaps = 3/73 (4%)
Query: 15 ALSAKVRKTIQSIKEI-VGNHSDADIYVALKETNMDPNETTQKLLNQDTFHEVKRRRDRK 73
++SA RK IQ+IKE GN+S+ +I L E NMDP+ET Q+LL QD FHEVK++RD++
Sbjct: 9 SISATTRKMIQNIKETTAGNYSEDEIIAMLHECNMDPDETAQRLLLQDPFHEVKKKRDKR 68
Query: 74 KETQNVENKVSAE 86
KE N+ NK SAE
Sbjct: 69 KE--NINNKDSAE 79
>AT3G13222.1 | Symbols: GIP1 | GIP1 (GBF-INTERACTING PROTEIN 1) |
chr3:4251294-4254213 REVERSE
Length = 567
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 51/73 (69%), Gaps = 2/73 (2%)
Query: 5 SRTEGGTGTN-ALSAKVRKTIQSIKEIVG-NHSDADIYVALKETNMDPNETTQKLLNQDT 62
SR G G+ ++ A + +TIQ+I+E+ G HSD DI+ KE DP+ETTQKLL DT
Sbjct: 2 SRISGDGGSRVSIPADLLQTIQNIREVTGKQHSDEDIFSVFKECFSDPHETTQKLLYLDT 61
Query: 63 FHEVKRRRDRKKE 75
FHEV+ +R+RKKE
Sbjct: 62 FHEVRSKRERKKE 74
>AT1G55820.1 | Symbols: | similar to GIP1 (GBF-INTERACTING
PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT3G13222.1);
similar to hypothetical protein [Vitis vinifera]
(GB:CAN73914.1); contains InterPro domain Protein of
unknown function DUF1296 (InterPro:IPR009719) |
chr1:20868063-20871084 FORWARD
Length = 575
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Query: 5 SRTEGGTGTNALSAKVRKTIQSIKEIVG-NHSDADIYVALKETNMDPNETTQKLLNQDTF 63
S ++GG+ ++ +RKT+Q I+E G HSD DI+ K++ DP+ET QKLL DTF
Sbjct: 2 SSSDGGSSRVSIPYHLRKTLQKIREYTGKQHSDEDIFAVYKDSFNDPHETAQKLLFLDTF 61
Query: 64 HEVKRRRDRKKE 75
HEV+ +R++KKE
Sbjct: 62 HEVRSKREKKKE 73
>AT4G18150.1 | Symbols: | similar to unknown protein [Arabidopsis
thaliana] (TAIR:AT1G29350.1); similar to unnamed
protein product [Vitis vinifera] (GB:CAO66902.1);
contains InterPro domain Protein of unknown function
DUF1296 (InterPro:IPR009719) | chr4:10050222-10053801
FORWARD
Length = 761
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 9 GGTGTNA---LSAKVRKTIQSIKEIVGNHSDADIYVALKETNMDPNETTQKLLNQDTFHE 65
GG+ +NA + A RK IQ +KEIV S+ +IY L E +M+P+E +LL+QDTFHE
Sbjct: 5 GGSVSNANGGVPASSRKVIQDLKEIV-ECSELEIYAMLVECDMNPDEAVNRLLSQDTFHE 63
Query: 66 VKRRRDRKKETQN 78
VK +R++KKET++
Sbjct: 64 VKSKREKKKETKD 76
>AT5G46380.1 | Symbols: | similar to unknown protein [Arabidopsis
thaliana] (TAIR:AT4G18150.1); similar to unnamed
protein product [Vitis vinifera] (GB:CAO66902.1);
contains InterPro domain Protein of unknown function
DUF1296 (InterPro:IPR009719) | chr5:18830315-18833201
REVERSE
Length = 607
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Query: 14 NALSAKVRKTIQSIKEIVGNHSDADIYVALKETNMDPNETTQKLLNQDTFHEVKRRRDRK 73
NA+ R ++S+KEIV N S+ +IY L E NM+ +E +LL+QD+F EVK +RD+K
Sbjct: 9 NAIPEYTRAIVRSMKEIV-NCSEQEIYAMLVECNMNADEAITRLLSQDSFQEVKSKRDKK 67
Query: 74 KETQNV 79
KE ++
Sbjct: 68 KEAKDA 73
>AT1G29370.1 | Symbols: | kinase-related | chr1:10278066-10283010
REVERSE
Length = 831
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 56/80 (70%), Gaps = 3/80 (3%)
Query: 4 ASRTEGGT--GTNALSAKVRKTIQSIKEIVGNHSDADIYVALKETNMDPNETTQKLLNQD 61
+S+ GG G + + RK +QS+ EIV N +A+IY LKE NMDPNET +LL+QD
Sbjct: 3 SSKVGGGARKGIQDIPSGSRKIVQSLTEIV-NSPEAEIYAMLKECNMDPNETVSRLLSQD 61
Query: 62 TFHEVKRRRDRKKETQNVEN 81
FHEVK ++++KKET+++ +
Sbjct: 62 PFHEVKSKKEKKKETRDISD 81
>AT1G29350.1 | Symbols: | similar to kinase-related [Arabidopsis
thaliana] (TAIR:AT1G29370.1); similar to unnamed
protein product [Vitis vinifera] (GB:CAO66902.1);
contains InterPro domain Protein of unknown function
DUF1296 (InterPro:IPR009719) | chr1:10268747-10273599
REVERSE
Length = 831
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 56/80 (70%), Gaps = 3/80 (3%)
Query: 4 ASRTEGGT--GTNALSAKVRKTIQSIKEIVGNHSDADIYVALKETNMDPNETTQKLLNQD 61
+S+ GG G + + RK +QS+ EIV N +A+IY LKE NMDPNET +LL+QD
Sbjct: 3 SSKVGGGARKGIQDIPSGSRKIVQSLTEIV-NSPEAEIYAMLKECNMDPNETVSRLLSQD 61
Query: 62 TFHEVKRRRDRKKETQNVEN 81
FHEVK ++++KKET+++ +
Sbjct: 62 PFHEVKSKKEKKKETRDISD 81