Miyakogusa Predicted Gene

chr3.CM0724.170.nd
Show Alignment: 
BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr3.CM0724.170.nd + phase: 0 /partial
         (361 letters)

Database: TAIR8_pep 
           32,825 sequences; 13,166,001 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G13990.1 | Symbols:  | similar to unknown protein [Arabidopsi...   171   5e-43
AT3G13990.2 | Symbols:  | similar to unknown protein [Arabidopsi...   171   5e-43
AT3G07660.1 | Symbols:  | similar to unknown protein [Arabidopsi...    83   2e-16
AT3G13222.1 | Symbols: GIP1 | GIP1 (GBF-INTERACTING PROTEIN 1) |...    77   2e-14
AT1G55820.1 | Symbols:  | similar to GIP1 (GBF-INTERACTING PROTE...    74   1e-13
AT4G18150.1 | Symbols:  | similar to unknown protein [Arabidopsi...    72   8e-13
AT5G46380.1 | Symbols:  | similar to unknown protein [Arabidopsi...    62   5e-10
AT1G29370.1 | Symbols:  | kinase-related | chr1:10278066-1028301...    62   8e-10
AT1G29350.1 | Symbols:  | similar to kinase-related [Arabidopsis...    62   8e-10

>AT3G13990.1 | Symbols:  | similar to unknown protein [Arabidopsis
           thaliana] (TAIR:AT3G07660.1); similar to unnamed protein
           product [Vitis vinifera] (GB:CAO45644.1); contains
           InterPro domain Protein of unknown function DUF1296
           (InterPro:IPR009719) | chr3:4625715-4630390 REVERSE
          Length = 848

 Score =  171 bits (434), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 139/346 (40%), Positives = 177/346 (51%), Gaps = 84/346 (24%)

Query: 1   MVPASRTEGGTGTNALSAKVRKTIQSIKEIVGNHSDADIYVALKETNMDPNETTQKLLNQ 60
           MV  SRT G  G   L  + +K IQSIKE+V +HSDADIY ALKE NMD NE  +KL++Q
Sbjct: 1   MVTGSRTSGNRGV-GLDDEAKKMIQSIKEVVDSHSDADIYTALKEANMDANEAVEKLIHQ 59

Query: 61  DTFHEVKRRRDRKKETQNVENKVSAEPRKNVENKVSAEPQKNVENKVSAEPRKNAENKVS 120
           D FHEVKR+RDRKKE     + V  EP  N++     +P +NV ++V             
Sbjct: 60  DPFHEVKRKRDRKKE-----DTVFVEP-ANIK-----KPLENVTSEV------------- 95

Query: 121 AEPWKHSENGGQGMKVHTPYERNVRKTNYSRNTLP---------------GVSREFRVVR 165
                         KV T  E NVR+  YSRN  P               G ++EFRVVR
Sbjct: 96  --------------KVRTQPEHNVRRGGYSRNFFPRNAAQRNASPRNPATGSNKEFRVVR 141

Query: 166 DNRVN-QIYREVKPPSLQHSTSTIEQSTVSTSEKGS-SAHANQSSSGARNS-QAPNGPSD 222
           DNR N  +  E+K  S Q S S I +   + ++ GS     N++SSGA++S    N P+D
Sbjct: 142 DNRSNPNVDEELKHSSAQSSGSNINKVVATVNKLGSRGGLGNRNSSGAQDSTDECNAPAD 201

Query: 223 AHTGQSKDAVSNVKKITSEEKQGVILNAAARVQPIK-PNKTHLNSSTMVSTSSAIGVYSS 281
           A   Q                        A ++P+  P    L   T+ ST+S +GVYSS
Sbjct: 202 ARLRQ------------------------AEIRPLHCPVNKELGGVTLPSTNSVLGVYSS 237

Query: 282 STDPVHVPSPNSRSSGVVGAIKREVGVVGVAQRQSSDNKAKQSFVP 327
           S DPVHVPSP SRSS  VGAIKREV   G+  +  S+N  K   VP
Sbjct: 238 SKDPVHVPSPVSRSS-PVGAIKREVRGGGLGGK-PSENVGKDPSVP 281


>AT3G13990.2 | Symbols:  | similar to unknown protein [Arabidopsis
           thaliana] (TAIR:AT3G07660.1); similar to unnamed protein
           product [Vitis vinifera] (GB:CAO45644.1); contains
           InterPro domain Protein of unknown function DUF1296
           (InterPro:IPR009719) | chr3:4625715-4630390 REVERSE
          Length = 847

 Score =  171 bits (434), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 139/346 (40%), Positives = 177/346 (51%), Gaps = 84/346 (24%)

Query: 1   MVPASRTEGGTGTNALSAKVRKTIQSIKEIVGNHSDADIYVALKETNMDPNETTQKLLNQ 60
           MV  SRT G  G   L  + +K IQSIKE+V +HSDADIY ALKE NMD NE  +KL++Q
Sbjct: 1   MVTGSRTSGNRGV-GLDDEAKKMIQSIKEVVDSHSDADIYTALKEANMDANEAVEKLIHQ 59

Query: 61  DTFHEVKRRRDRKKETQNVENKVSAEPRKNVENKVSAEPQKNVENKVSAEPRKNAENKVS 120
           D FHEVKR+RDRKKE     + V  EP  N++     +P +NV ++V             
Sbjct: 60  DPFHEVKRKRDRKKE-----DTVFVEP-ANIK-----KPLENVTSEV------------- 95

Query: 121 AEPWKHSENGGQGMKVHTPYERNVRKTNYSRNTLP---------------GVSREFRVVR 165
                         KV T  E NVR+  YSRN  P               G ++EFRVVR
Sbjct: 96  --------------KVRTQPEHNVRRGGYSRNFFPRNAAQRNASPRNPATGSNKEFRVVR 141

Query: 166 DNRVN-QIYREVKPPSLQHSTSTIEQSTVSTSEKGS-SAHANQSSSGARNS-QAPNGPSD 222
           DNR N  +  E+K  S Q S S I +   + ++ GS     N++SSGA++S    N P+D
Sbjct: 142 DNRSNPNVDEELKHSSAQSSGSNINKVVATVNKLGSRGGLGNRNSSGAQDSTDECNAPAD 201

Query: 223 AHTGQSKDAVSNVKKITSEEKQGVILNAAARVQPIK-PNKTHLNSSTMVSTSSAIGVYSS 281
           A   Q                        A ++P+  P    L   T+ ST+S +GVYSS
Sbjct: 202 ARLRQ------------------------AEIRPLHCPVNKELGGVTLPSTNSVLGVYSS 237

Query: 282 STDPVHVPSPNSRSSGVVGAIKREVGVVGVAQRQSSDNKAKQSFVP 327
           S DPVHVPSP SRSS  VGAIKREV   G+  +  S+N  K   VP
Sbjct: 238 SKDPVHVPSPVSRSS-PVGAIKREVRGGGLGGK-PSENVGKDPSVP 281


>AT3G07660.1 | Symbols:  | similar to unknown protein [Arabidopsis
          thaliana] (TAIR:AT3G13990.1); similar to unnamed
          protein product [Vitis vinifera] (GB:CAO41134.1);
          contains InterPro domain Protein of unknown function
          DUF1296 (InterPro:IPR009719) | chr3:2445281-2450378
          REVERSE
          Length = 841

 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/73 (56%), Positives = 54/73 (73%), Gaps = 3/73 (4%)

Query: 15 ALSAKVRKTIQSIKEI-VGNHSDADIYVALKETNMDPNETTQKLLNQDTFHEVKRRRDRK 73
          ++SA  RK IQ+IKE   GN+S+ +I   L E NMDP+ET Q+LL QD FHEVK++RD++
Sbjct: 9  SISATTRKMIQNIKETTAGNYSEDEIIAMLHECNMDPDETAQRLLLQDPFHEVKKKRDKR 68

Query: 74 KETQNVENKVSAE 86
          KE  N+ NK SAE
Sbjct: 69 KE--NINNKDSAE 79


>AT3G13222.1 | Symbols: GIP1 | GIP1 (GBF-INTERACTING PROTEIN 1) |
          chr3:4251294-4254213 REVERSE
          Length = 567

 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/73 (52%), Positives = 51/73 (69%), Gaps = 2/73 (2%)

Query: 5  SRTEGGTGTN-ALSAKVRKTIQSIKEIVG-NHSDADIYVALKETNMDPNETTQKLLNQDT 62
          SR  G  G+  ++ A + +TIQ+I+E+ G  HSD DI+   KE   DP+ETTQKLL  DT
Sbjct: 2  SRISGDGGSRVSIPADLLQTIQNIREVTGKQHSDEDIFSVFKECFSDPHETTQKLLYLDT 61

Query: 63 FHEVKRRRDRKKE 75
          FHEV+ +R+RKKE
Sbjct: 62 FHEVRSKRERKKE 74


>AT1G55820.1 | Symbols:  | similar to GIP1 (GBF-INTERACTING
          PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT3G13222.1);
          similar to hypothetical protein [Vitis vinifera]
          (GB:CAN73914.1); contains InterPro domain Protein of
          unknown function DUF1296 (InterPro:IPR009719) |
          chr1:20868063-20871084 FORWARD
          Length = 575

 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 50/72 (69%), Gaps = 1/72 (1%)

Query: 5  SRTEGGTGTNALSAKVRKTIQSIKEIVG-NHSDADIYVALKETNMDPNETTQKLLNQDTF 63
          S ++GG+   ++   +RKT+Q I+E  G  HSD DI+   K++  DP+ET QKLL  DTF
Sbjct: 2  SSSDGGSSRVSIPYHLRKTLQKIREYTGKQHSDEDIFAVYKDSFNDPHETAQKLLFLDTF 61

Query: 64 HEVKRRRDRKKE 75
          HEV+ +R++KKE
Sbjct: 62 HEVRSKREKKKE 73


>AT4G18150.1 | Symbols:  | similar to unknown protein [Arabidopsis
          thaliana] (TAIR:AT1G29350.1); similar to unnamed
          protein product [Vitis vinifera] (GB:CAO66902.1);
          contains InterPro domain Protein of unknown function
          DUF1296 (InterPro:IPR009719) | chr4:10050222-10053801
          FORWARD
          Length = 761

 Score = 71.6 bits (174), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 36/73 (49%), Positives = 52/73 (71%), Gaps = 4/73 (5%)

Query: 9  GGTGTNA---LSAKVRKTIQSIKEIVGNHSDADIYVALKETNMDPNETTQKLLNQDTFHE 65
          GG+ +NA   + A  RK IQ +KEIV   S+ +IY  L E +M+P+E   +LL+QDTFHE
Sbjct: 5  GGSVSNANGGVPASSRKVIQDLKEIV-ECSELEIYAMLVECDMNPDEAVNRLLSQDTFHE 63

Query: 66 VKRRRDRKKETQN 78
          VK +R++KKET++
Sbjct: 64 VKSKREKKKETKD 76


>AT5G46380.1 | Symbols:  | similar to unknown protein [Arabidopsis
          thaliana] (TAIR:AT4G18150.1); similar to unnamed
          protein product [Vitis vinifera] (GB:CAO66902.1);
          contains InterPro domain Protein of unknown function
          DUF1296 (InterPro:IPR009719) | chr5:18830315-18833201
          REVERSE
          Length = 607

 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 45/66 (68%), Gaps = 1/66 (1%)

Query: 14 NALSAKVRKTIQSIKEIVGNHSDADIYVALKETNMDPNETTQKLLNQDTFHEVKRRRDRK 73
          NA+    R  ++S+KEIV N S+ +IY  L E NM+ +E   +LL+QD+F EVK +RD+K
Sbjct: 9  NAIPEYTRAIVRSMKEIV-NCSEQEIYAMLVECNMNADEAITRLLSQDSFQEVKSKRDKK 67

Query: 74 KETQNV 79
          KE ++ 
Sbjct: 68 KEAKDA 73


>AT1G29370.1 | Symbols:  | kinase-related | chr1:10278066-10283010
          REVERSE
          Length = 831

 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 56/80 (70%), Gaps = 3/80 (3%)

Query: 4  ASRTEGGT--GTNALSAKVRKTIQSIKEIVGNHSDADIYVALKETNMDPNETTQKLLNQD 61
          +S+  GG   G   + +  RK +QS+ EIV N  +A+IY  LKE NMDPNET  +LL+QD
Sbjct: 3  SSKVGGGARKGIQDIPSGSRKIVQSLTEIV-NSPEAEIYAMLKECNMDPNETVSRLLSQD 61

Query: 62 TFHEVKRRRDRKKETQNVEN 81
           FHEVK ++++KKET+++ +
Sbjct: 62 PFHEVKSKKEKKKETRDISD 81


>AT1G29350.1 | Symbols:  | similar to kinase-related [Arabidopsis
          thaliana] (TAIR:AT1G29370.1); similar to unnamed
          protein product [Vitis vinifera] (GB:CAO66902.1);
          contains InterPro domain Protein of unknown function
          DUF1296 (InterPro:IPR009719) | chr1:10268747-10273599
          REVERSE
          Length = 831

 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 56/80 (70%), Gaps = 3/80 (3%)

Query: 4  ASRTEGGT--GTNALSAKVRKTIQSIKEIVGNHSDADIYVALKETNMDPNETTQKLLNQD 61
          +S+  GG   G   + +  RK +QS+ EIV N  +A+IY  LKE NMDPNET  +LL+QD
Sbjct: 3  SSKVGGGARKGIQDIPSGSRKIVQSLTEIV-NSPEAEIYAMLKECNMDPNETVSRLLSQD 61

Query: 62 TFHEVKRRRDRKKETQNVEN 81
           FHEVK ++++KKET+++ +
Sbjct: 62 PFHEVKSKKEKKKETRDISD 81