Miyakogusa Predicted Gene

chr3.CM0634.20.nc
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr3.CM0634.20.nc + phase: 0 
         (2378 letters)

Database: TAIR8_pep 
           32,825 sequences; 13,166,001 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G02080.1 | Symbols:  | transcriptional regulator-related | ch...  2787   0.0  

>AT1G02080.1 | Symbols:  | transcriptional regulator-related |
            chr1:373694-386682 FORWARD
          Length = 2378

 Score = 2787 bits (7225), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1454/2433 (59%), Positives = 1760/2433 (72%), Gaps = 123/2433 (5%)

Query: 6    STASDQIRFLLNSLNEVNSDSVFHQLSQFTEFGTVGCILLLRTCLDHFNYVRRDMNDMQN 65
            S  +   RFLL+S ++ + DS+  QLSQF +FG    I +L+TCLD F   R   N +Q 
Sbjct: 4    SKVAGHTRFLLHSFHDSDVDSIALQLSQFVDFGVETSIPVLKTCLDCFTARRSHPNSLQL 63

Query: 66   EPILGAVIKHLLDKPNFSTVLSESVKNVEINESFLQSFCNGLQLSLLEKIAISLALSDSE 125
            E ++  + KH+L   N +T+L  ++ + E+ +  +      L  S+ E I  +LAL+D E
Sbjct: 64   EKVVSLLFKHVLKLSNLATLLPHALNDFELTQESVDDLTTTLNFSISENIGFALALTDFE 123

Query: 126  NPDARLCGKNFCMAQIEELGASPGSFSCHEQIHNIIMFLKQSEGLSKHADSFMQILSLVQ 185
              DA+  G+N  +AQIE+L A+ G     E IH+++ FL++SE LS H DSF+Q LS  Q
Sbjct: 124  RLDAKTTGRNLLLAQIEQLCANTGQILSSELIHSVLSFLRKSEDLSMHLDSFLQFLSSAQ 183

Query: 186  FKDTPPYVLTPVLPDEMHEADFLRNMELFHESGENDFDAILADIQKEMNMGDIVKELGYG 245
             +D   + LTP+L  ++HEA   R+M+   +S +ND DAILA+I KE+++GD++ ELG G
Sbjct: 184  PRDDFSFALTPMLAQQVHEAPVFRSMDFHTDSADNDLDAILAEIDKEVSVGDLMGELGCG 243

Query: 246  CTVDVLQCKEILSLFLPITDKTLSKLLGAIVRTHAGLEDNQSTFLTFGTALGYNNLAELP 305
             T D  QCKEILS F P+ + T+S+++G + RT A LEDNQ+TF TF  ALG     ELP
Sbjct: 244  FTADAQQCKEILSSFAPLGEATISRIVGNVSRTCADLEDNQTTFSTFTVALGSCIPTELP 303

Query: 306  PLSSWNIDVLIDTVKLL-APQTNWVRVIENLDHEGFFLPSEEAFSFLMAVYKHAYKEPFP 364
               SWN+D+L+DT+K L AP  +W +VIENLDH+GF +P+ E+FSF M +YK A KEPFP
Sbjct: 304  TPRSWNVDILVDTIKQLQAPGISWRKVIENLDHDGFDIPNMESFSFFMRIYKAACKEPFP 363

Query: 365  LHAICGFVWKNTEGQLSFLKYAASAPPELFTFAHSARQLAYVDAINGHKLQSGHANHAWX 424
            L A+CG VWKN +GQLSFLK+A SAPPE+FTF HS R+L Y+D ++  + Q G +NHAW 
Sbjct: 364  LDAVCGSVWKNMDGQLSFLKHAISAPPEVFTFMHSPRKLVYIDNMHSQEQQLGLSNHAWL 423

Query: 425  XXXXXXXXXXXAEKGHASIVRSILDYPLKHCPDVLLLGMAHINTTYNLFQREVSLAVFPM 484
                       AE+GHA +V S+L YPL  CP  LLLGM HI T YNL QREV  A+ P+
Sbjct: 424  SLDLLDVLCQLAERGHAVLVSSLLQYPLTQCPRTLLLGMTHIKTAYNLIQREVVSAILPV 483

Query: 485  IVNSAVGSGMILHLWHVNPNLVLRGLMDSQNSDVDSITKIVDICQELKILSSVLEIIPSY 544
            I+ S   SG I +LWH N  LVL G++D+Q+   DS+ +I++IC ELKILS VLE +P  
Sbjct: 484  IITSPQDSGFIHNLWHQNAELVLWGIIDAQHLKADSMLRIIEICHELKILSVVLESVPVS 543

Query: 545  YSIRLAAVASRKEFLDLGKWLSSILTTYKDVFFEECLKFLKEVHFSGSQNLSGNSFHQPG 604
             SIRLA +AS +  LD+  WL + L  YKD+F EECLKF+K VHFS S +     FH   
Sbjct: 544  SSIRLAVLASLRGLLDIENWLPNCLYMYKDLFAEECLKFVKNVHFSESDDFRAKIFHPSD 603

Query: 605  AVLNLYTETAATLLKVLKSHTDLVTSGLLKEELESLHISIIDSNPRLQNGGTTDSSASDG 664
             + +L+ E   +LLKVLK+H + +TS  L EE+E ++ +I+D NP+LQNG   DSSA + 
Sbjct: 604  PLSDLHLEATTSLLKVLKAHDNAITSSQLVEEIEKVNAAILDCNPKLQNGEAKDSSAPNA 663

Query: 665  YAEDIEAEANSYFHQMFSEQLHINAMVQMLARFKESSVKREKSIFECMIQNLFEEYRFFP 724
            Y +D+EAEAN+YFHQMFS  L ++AMVQML+R+KES V REK IFECMI NLFEEYRFFP
Sbjct: 664  YGDDVEAEANAYFHQMFSSHLSVDAMVQMLSRYKESLVPREKLIFECMIANLFEEYRFFP 723

Query: 725  KYPERQLKIAAVLFGSVIKHQLVTHLSLGIALRYVLDALRKPADSKMFLFGSLALEQFVG 784
            KYPERQLKIA++LFGSVIKHQL++ L+LG+ALR VLD+LRKPADSKMFLFGS ALEQFV 
Sbjct: 724  KYPERQLKIASILFGSVIKHQLISSLTLGMALRLVLDSLRKPADSKMFLFGSKALEQFVN 783

Query: 785  RLVEWPQYCNHILQISHLRSTHSEIVALIEQALARISSGHIDGDGASHASIIGNHNSAQA 844
            RLVE PQYCNHILQISHLRSTH E+V +IEQAL+RISSG+++ D +     + +   +Q+
Sbjct: 784  RLVELPQYCNHILQISHLRSTHPELVTVIEQALSRISSGNLESDAS-----VSHPGPSQS 838

Query: 845  TFGHVELTGSSVIQPG-QPHLSMQLQQRHENSFDDRHKASIGSSSDVKPLLSTLGQSSV- 902
              G+ EL+GS + QP  Q    +QLQQ++E             S++ KPLL +L  +SV 
Sbjct: 839  FPGNGELSGSGIGQPALQLSSPLQLQQKNE--------VPSVPSNEAKPLLPSLSTTSVD 890

Query: 903  --VTPAD-----ASSTNKLHXXXXXXXXXXXXPGFVRPSRGATSAKFGSVLNIETLVAAA 955
              V P +     +SST+                GFVRP+R  TS +FGS LNIETLVAAA
Sbjct: 891  VSVNPKNPGIPTSSSTST---------------GFVRPARATTSTRFGSALNIETLVAAA 935

Query: 956  EKRETPIEGPGSEVQDKXXXXXXXXXXXXVEAKAKEFDEILKEQYYPWFAQYMVMKRVSI 1015
            E+RE  IE P S+VQDK            +E+K KEF EIL +QYYPWFAQYMVMKR SI
Sbjct: 936  ERRENAIEAPPSDVQDKVSFIINNISTTNIESKGKEFAEILPQQYYPWFAQYMVMKRASI 995

Query: 1016 EPNFHDVYLKFLDKVNSKALNKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGK 1075
            EPNFHD+YLKFLDKV+SK L KEI+Q TYENCKVLLGSELIKSSSEERSLLKNLGSWLG+
Sbjct: 996  EPNFHDLYLKFLDKVDSKLLFKEILQNTYENCKVLLGSELIKSSSEERSLLKNLGSWLGR 1055

Query: 1076 LTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMGIL 1135
            LTIGRN VLRAREIDPKSLI+EAYEKGLMIAVIPFTSK+LEPCQ+S+AYQPPNPWTM IL
Sbjct: 1056 LTIGRNYVLRAREIDPKSLIVEAYEKGLMIAVIPFTSKVLEPCQNSIAYQPPNPWTMAIL 1115

Query: 1136 GLLVEIYSMPNLKMNLKFDIEVLFKTLAVEMKDVTPTSLLKDRKREIEGNPDFSNKDVGV 1195
            GLL EIYSMPNLKMNLKFDIEVLFK L VEMK+V PTSLLKDRKREI+GNPDFSNKD GV
Sbjct: 1116 GLLAEIYSMPNLKMNLKFDIEVLFKNLGVEMKEVVPTSLLKDRKREIDGNPDFSNKDPGV 1175

Query: 1196 ---SQAQLVSDIKPGLVPPVNQVELPPLEVTNPSN----PHMLSPYAGPLHITTGPLIDD 1248
               SQ Q++ +  P  + P+ Q++L PL+V N  N      +LS Y  P  + T  L+D+
Sbjct: 1176 TQISQPQMIPE--PKTISPLKQIDL-PLDVANSPNTDVPSKLLSQYVAPQRVYTNTLMDE 1232

Query: 1249 EKVTPLGLSDQLPTAQGLLQATTNPSPF---SQLSTQIPNIGTHVIINPKLSGFGLQMHF 1305
            EKV  LGL +QLP+ QGL Q+T  PSP    SQLS  +PNIG HV+IN KLS FG+   F
Sbjct: 1233 EKVATLGLPEQLPSPQGLFQST--PSPLFSISQLSAALPNIGNHVVINQKLSAFGMHFPF 1290

Query: 1306 QRAVPISMDRAIKEIVTGIVQRSVSIATQTTKELVLKDYAMESDETRILNAAHLMVASLS 1365
            QR VP++MDRAIKEIV+GIVQRSV IA QTTKELVLKDYA+E DE+RI NAAHLMVASL+
Sbjct: 1291 QRVVPLAMDRAIKEIVSGIVQRSVCIACQTTKELVLKDYALEPDESRIYNAAHLMVASLA 1350

Query: 1366 GSLAHVTCKEPLRTSISNQLRTALQNINIASEILEQAVQLVTNDNLDLGCAVIEQAATDK 1425
            GSLAHVTCKEPLRTSIS  LR +LQ +NI+++ LEQ VQLVTNDNLDLGCA IEQAAT+K
Sbjct: 1351 GSLAHVTCKEPLRTSISGHLRNSLQGLNISNDALEQIVQLVTNDNLDLGCAAIEQAATEK 1410

Query: 1426 AISTIDTEIGQQLSVRRKHREGMGSTFFDANMYQQGSMGGVPEPLRPKPGQLSLSQQRVY 1485
            AI TID +I QQL +RRKHR+G GS+FFD N+  Q S+  +PE LRPKPG LSLSQQRVY
Sbjct: 1411 AIQTIDADIAQQLLLRRKHRDGAGSSFFDPNILSQNSVSFIPESLRPKPGHLSLSQQRVY 1470

Query: 1486 EDFVRLPWQNQSTQNXXXXXXXXXXXXXXXXXXXXXXXXXXQMSPGYS--VNTGYEGVPR 1543
            EDFV+ PWQ QSTQ                             S   S   N   + V R
Sbjct: 1471 EDFVQHPWQKQSTQTSHGLSAASSSSGDVALGSGYGPVSGKVASEFLSNAGNARMDMVSR 1530

Query: 1544 PIDDISESNLAPHFSASSVHIRAADSVSQHSLEKDSVA-SFPSTASTPELHTVDSSD-AV 1601
            P  DIS       F +S V + +    SQ     DS +  F  +  T EL+  +SSD A 
Sbjct: 1531 P-SDISVDG----FESSPVSLLS----SQVDPAGDSSSLQFTKSLPTSELNLAESSDAAT 1581

Query: 1602 KDSGASSQPPVSSGAMERLGSS-FLEPTLTTRDALDKYQLVAQK---------------G 1645
            K++G S Q   S+  MERLG+S   +P+L+TRDALDK Q+V QK                
Sbjct: 1582 KETGTSLQTLTSAATMERLGASNITQPSLSTRDALDKCQIVTQKMEELVANNAGDDEIQA 1641

Query: 1646 IISEVPEIILRCVSRDEAALAVAQKVFKGLYDNATNNIHVFAHLAILTAIRDVCKLAVKE 1705
            +ISEVPEIILRC+SRDEAA AVAQK FK LY+NA++N+HV A+LAIL AIRDVCK  VKE
Sbjct: 1642 VISEVPEIILRCISRDEAAFAVAQKAFKALYENASSNLHVSANLAILVAIRDVCKRVVKE 1701

Query: 1706 LTSWVIYSEEERKYNKDITVGLIRSELLNLTEYNVHMAKLIDGGRNKAATEFSISLLQIL 1765
            LTSWVIYSEE+RK NKDIT+GLI+ ELL+L EYNVHMAK +DGGRNK AT+F+ISLLQ L
Sbjct: 1702 LTSWVIYSEEDRKLNKDITIGLIQRELLSLAEYNVHMAKHLDGGRNKTATDFAISLLQSL 1761

Query: 1766 VIEEPKVISELQSLVDALAKLATKPGFPESLQQLIEMIKXXXXXXXXXXXXXXGKDDKAR 1825
            V EE  VISEL SLVDALAKLA+K G  ESLQQLI++I+              G D+  R
Sbjct: 1762 VTEESSVISELHSLVDALAKLASKSGSSESLQQLIDIIRNPVTNTAGLSDSSTGNDNNDR 1821

Query: 1826 QSRDNKLIMSPFKKQGPGPLAANREDMNNVDSIEPDPAGFRDQVSMLFQDWYRICELPGA 1885
            Q +D K+  +            N E+  ++D +E DPAGF+++VS LF++WY+ICELPGA
Sbjct: 1822 Q-KDEKVACN----------TTNTEESTSLDYVESDPAGFQNRVSTLFKNWYQICELPGA 1870

Query: 1886 NDTASTHFILQLHQNGLLKGDDITDRFFRVLLELAVAHCLSTEVNNSGALQSPQQLPAMS 1945
            N+TA + ++L LHQ GLLKGDD T+ FFR+LLEL+VAHC+S+E  NSGA+QSPQQ  + S
Sbjct: 1871 NETACSQYVLHLHQTGLLKGDDTTESFFRILLELSVAHCISSEDINSGAVQSPQQPQSPS 1930

Query: 1946 FLAIDIYAKLVFYILK----------------ILAVTVRCILKDAEEKKASFNPRPFFRL 1989
            FL ID+YAKLVF ILK                I+A TVR I KDAE+KK S N +P+FRL
Sbjct: 1931 FLIIDMYAKLVFSILKYFPEQESSSRLFLLSEIMADTVRFIQKDAEDKKTSLNSKPYFRL 1990

Query: 1990 FINWLLDLGSLEPVTDGANLQILIAFANAFHALQPLKVPAFSFAWLELISHRSFMPKMVT 2049
            FINWLLDL SL+P TDGAN Q+L AFANAFHALQPLK+PAFSFAWLEL+SHRSFMPK++T
Sbjct: 1991 FINWLLDLCSLDPGTDGANFQVLTAFANAFHALQPLKIPAFSFAWLELVSHRSFMPKLLT 2050

Query: 2050 GNGQKGWPHIQRLLVDLFQFMEPFLRHAELGDPVRFLYKGTLRVLLVLLHDFPEFLCDYH 2109
             NGQKGWP++QRLLVDL QF+EPFLR+AELG PV FLYKGTLRVLLVLLHDFPEFLCDYH
Sbjct: 2051 VNGQKGWPYVQRLLVDLLQFLEPFLRNAELGGPVHFLYKGTLRVLLVLLHDFPEFLCDYH 2110

Query: 2110 FTFCDVIPPSCIQMRNIILSAFPRSMRLPDPSTPNLKIDLLQEITQSPRILSEVDAALKA 2169
            FTFCDVIP SCIQMRNIILS+FPR+MRLPDPSTPNLKIDLL EI ++P ILSEVDAALKA
Sbjct: 2111 FTFCDVIPSSCIQMRNIILSSFPRNMRLPDPSTPNLKIDLLPEIVEAPCILSEVDAALKA 2170

Query: 2170 KQMKTDVDEYLKTRQQNSPFXXXXXXXXXXXPNEAASAGTRYNVPLINSLVLYVGMQGIQ 2229
            KQMK DVDEYL +RQQNS F            +EA+SAGTRY+VPLINSLVLY GMQ IQ
Sbjct: 2171 KQMKNDVDEYLTSRQQNSTFLSELKTKLLLSSSEASSAGTRYSVPLINSLVLYTGMQAIQ 2230

Query: 2230 GRTPHAQSAGMLAVFSVGAALDIFQTLIVDLDTEGRYLFLNAIANQLRYPNTHTHYFSFI 2289
                    AG     +V  AL +F+ L ++LDTEGRYLFLNAIANQLRYPN HTHYFSFI
Sbjct: 2231 -----QLQAGETQAQNV-VALQMFKYLSMELDTEGRYLFLNAIANQLRYPNNHTHYFSFI 2284

Query: 2290 LLHLFAESNQEIIQEQITRVVLERLIVNRPHPWGLLVTFIELVKNRMYSFWNRSFIRCAP 2349
            +L+LF ES+QEIIQEQITRV+LERLIVNRPHPWGLL+TFIEL+KN  YSFW ++FIRCAP
Sbjct: 2285 MLYLFFESDQEIIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYSFWKQAFIRCAP 2344

Query: 2350 EIEKLFESLFESVSRSCGGPKPVDE----SGWV 2378
            EIEK    LFESV+RSCGG KPVDE     GWV
Sbjct: 2345 EIEK----LFESVARSCGGLKPVDEGMVSGGWV 2373