Miyakogusa Predicted Gene
- chr3.CM0590.610.nd
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr3.CM0590.610.nd - phase: 0
(347 letters)
Database: TAIR8_pep
32,825 sequences; 13,166,001 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G61260.1 | Symbols: | similar to unknown protein [Arabidopsi... 181 7e-46
AT5G54300.1 | Symbols: | similar to unknown protein [Arabidopsi... 150 9e-37
AT1G11220.1 | Symbols: | similar to unknown protein [Arabidopsi... 116 2e-26
AT1G11210.1 | Symbols: | similar to unknown protein [Arabidopsi... 79 3e-15
AT1G11230.1 | Symbols: | similar to unknown protein [Arabidopsi... 63 2e-10
AT4G04990.1 | Symbols: | similar to unknown protein [Arabidopsi... 54 2e-07
>AT1G61260.1 | Symbols: | similar to unknown protein [Arabidopsis
thaliana] (TAIR:AT1G11220.1); similar to unknown
[Populus trichocarpa] (GB:ABK92540.1); contains InterPro
domain Protein of unknown function DUF761, plant
(InterPro:IPR008480) | chr1:22597421-22598651 REVERSE
Length = 344
Score = 181 bits (458), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 135/375 (36%), Positives = 184/375 (49%), Gaps = 68/375 (18%)
Query: 3 FLSVKTVLISTGILSMAMGLKLTVPVVSNFIFTEAAPTLSTFFLTCFTPPYLYLLLNFII 62
++ K VLIS+G+ ++A+ LKL+VPV +F + A P L + L+ PPYLY++ N II
Sbjct: 5 MMTTKAVLISSGVATVALLLKLSVPVAVDFSVSRA-PILWSSLLSWLKPPYLYVVTNGII 63
Query: 63 LTIVATSKLH--NHNNSPPDTALLPTEPLIHAADVAAYGVHIPAPEPV--------KILE 112
+TIVA+SK + +H+ D E +++ G I EP+ +ILE
Sbjct: 64 ITIVASSKYYRSHHDRDEED------EIVVYGGG----GYKIQTEEPIVNQHQASPRILE 113
Query: 113 NSQIDYNGEM---------------ETTPVKFSGGFEMXXXXXXXXXXXXXXXAKTHAVI 157
+D T V F E + +VI
Sbjct: 114 VKDLDTGAHFGFVVANLEAEELESEAVTAVVFDDEEEEKKIIDSAATAEDEIEEELKSVI 173
Query: 158 XXXXXXXXXXX-----XXXEEENLAPILQRKESLEFAFNDENEKPPVSARFGHRKTVRSS 212
E ENL PI EKP V++RFGHRK +++S
Sbjct: 174 MVENSDLVESDVIPPPMMIESENLPPI---------------EKPLVTSRFGHRKLMKAS 218
Query: 213 PEGVTVVALGVTKPKRQETLESTWRTITEGRAMPLTRHL-KKSETMETQPRRNAAPLADL 271
EG AL VTKPK+ ETLE+TW+ ITEG++ PLTR L ++S+T R ++ +
Sbjct: 219 QEGGR--ALRVTKPKKNETLENTWKMITEGKSTPLTRQLYRRSDTF---GRGDSGGVDGE 273
Query: 272 NGPVMKKSETFGGREXXXXXXXXXXXXXXXXLRKESSLSQDELNRRVEAFINKFNAEMRL 331
PV KKS+TF R +RKE SLSQ+ELNRRVEAFI KFN EM+L
Sbjct: 274 VKPVYKKSDTFRDR------TNYYQLAETAKVRKEPSLSQEELNRRVEAFIKKFNEEMKL 327
Query: 332 QRQESLRQYKEMVNR 346
QR ESLRQYKE+ +R
Sbjct: 328 QRMESLRQYKEITSR 342
>AT5G54300.1 | Symbols: | similar to unknown protein [Arabidopsis
thaliana] (TAIR:AT1G61260.1); similar to unnamed protein
product [Vitis vinifera] (GB:CAO39207.1); contains
InterPro domain Protein of unknown function DUF761,
plant (InterPro:IPR008480) | chr5:22071496-22072568
REVERSE
Length = 326
Score = 150 bits (380), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 120/359 (33%), Positives = 172/359 (47%), Gaps = 61/359 (16%)
Query: 2 GFLSVKTVLISTGILSMAMGLKLTVPVVSNFIFTEAAPTLSTFFLTCFTPPYLYLLLNFI 61
F + TV+I+ G+ S+A + LTVP VS+F+ + P + + PPYLYL++N I
Sbjct: 9 SFKTTATVVIA-GVSSIATAMILTVPSVSHFVVS-CFPIIYDNTVFLLKPPYLYLVINSI 66
Query: 62 ILTIVATSKLHNHNNSPPDTALLPTEPLIHAADVAAYGVHIPAPEPVKILENSQIDYNGE 121
I+ I+ATSKL + ++S + ++++ IP P PV + S ID +G
Sbjct: 67 IVCIIATSKLTHKSSS------------VDDSEISEVVTPIPIPVPVHL--PSDID-SGY 111
Query: 122 METTPV--KFSGGFEMXXXXXXXXXXXXXXXAKTHAVIXXXXXXXXXXXXXXEEENLAPI 179
+ V ++G E E E P
Sbjct: 112 LNVVHVVSDYTGFVEKIDDVSINPTVEAIRKFPE----VQEAEKSKESSDSPEPETEKPK 167
Query: 180 LQRKESLEFAFNDENEKPPVSARFGHRKTVRSSPEGVTV-VALGVTKP-KRQETLESTWR 237
L+ KPP RF +K+++S+ EG ALGVTKP +RQ+TLE+TW+
Sbjct: 168 LKNDSPEISILKHSTRKPP---RFNQQKSLKSNSEGGNKKTALGVTKPPRRQDTLETTWK 224
Query: 238 TITEGRAMPLTRHLKKSETMETQPRRNAAP-----------LADLNGPVMKKSETFGGRE 286
ITEGR+ PLT+HL KS+T + + ++P L D+N P +K+
Sbjct: 225 KITEGRSTPLTKHLTKSDTWQERAHVQSSPENKEKMTKSENLKDINTPTEEKT------- 277
Query: 287 XXXXXXXXXXXXXXXXLRKESSLSQDELNRRVEAFINKFNAEMRLQRQESLRQYKEMVN 345
L++E S Q+ELNRRVEAFI KFN EMRLQR ESL +Y EMVN
Sbjct: 278 ---------------VLKREPSPGQEELNRRVEAFIKKFNEEMRLQRLESLAKYNEMVN 321
>AT1G11220.1 | Symbols: | similar to unknown protein [Arabidopsis
thaliana] (TAIR:AT1G11230.1); similar to fiber expressed
protein [Gossypium hirsutum] (GB:AAY85179.1); contains
InterPro domain Protein of unknown function DUF761,
plant (InterPro:IPR008480) | chr1:3760022-3761165
REVERSE
Length = 310
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 110/347 (31%), Positives = 166/347 (47%), Gaps = 49/347 (14%)
Query: 3 FLSVKTVLISTGILSMAMGLKLTVPVVSNFIFTEAAPTLSTFFLTCFTPPYLYLLLNFII 62
+S+K LI+ GI+++++ LK +VP+ +F + P + FL+ PPYL++ +N II
Sbjct: 5 MISIKAALITAGIVAVSLFLKSSVPIAVDFSVSRF-PIFWSSFLSWLKPPYLFVAINVII 63
Query: 63 LTIVATSKLHN---HNNSPPDTALLPTEPLIHAADVAAYGVHIPAPEPVKILE-NSQIDY 118
I+A+SK + + D LL E I V AP P ++++ ++ D+
Sbjct: 64 TIIMASSKFYQSVGEQDGEDDEILLGGEYTIP-------NVITQAP-PRRLVDLDADFDF 115
Query: 119 NGEMETTPVKFSGGFEMXXXXXXXXXXXXXXXAKTHAVIXXXXXXXXXXXXXXEE-ENLA 177
++ +P+ + E+ +T+ EE ENL
Sbjct: 116 VATVQ-SPILVA---EVEILEVVFEEKEMAISGQTNGGDEFAVMRSELNQPIMEESENLP 171
Query: 178 PILQRKESLEFAFNDENEKPPVSARFGHRKTVRSSPEGVT--VVALGVTKPKRQETLEST 235
P EKP VSAR GHRK +++S +GV AL V KP R ETLE+T
Sbjct: 172 PA---------------EKPLVSARSGHRKPIKASSKGVNRKKKALKVVKPNRHETLENT 216
Query: 236 WRTIT-EGRAMPLTRHLKKSETMETQPRRNAAPLADLNGPVMKKSETFGGREXXXXXXXX 294
W IT EG++ PLT H +K+ + NA D+ PV++K+ETF R+
Sbjct: 217 WNMITEEGKSTPLTCHYRKT----SMSGLNAG--GDVK-PVLRKAETF--RDVTNYRQSS 267
Query: 295 XXXXXXXXLRKESSLSQDELNRRVEAFINKFNAEMRLQRQESLRQYK 341
++KE S S++ELNRRVEAFI K E R ESL+ K
Sbjct: 268 PTVTSPVKMKKEMSPSREELNRRVEAFIKKCKEE----RLESLKLEK 310
>AT1G11210.1 | Symbols: | similar to unknown protein [Arabidopsis
thaliana] (TAIR:AT1G11220.1); similar to cotton fiber
expressed protein 1 [Gossypium hirsutum]
(GB:AAC33276.1); contains InterPro domain Protein of
unknown function DUF761, plant (InterPro:IPR008480) |
chr1:3755876-3756911 REVERSE
Length = 308
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/142 (40%), Positives = 76/142 (53%), Gaps = 19/142 (13%)
Query: 195 EKPPVSARFGHRK-TVRSSP-EGVTVVALGVTKPKRQETLESTWRTITEGR--AMPLTRH 250
EKP V+AR G +K V+++P E ++ AL V KPKR ETLE+TW+ I EG +PLT +
Sbjct: 160 EKPLVTARIGQKKPVVKTTPAERNSMRALRVAKPKRNETLENTWKMIMEGNKSTLPLTSY 219
Query: 251 LKKSETM----ETQPRRNAAPLADLNGPVMKKSETFGGREXXXXXXXXXXXXXXXXLRKE 306
K+ +T ET+ V+KKSETF R + +
Sbjct: 220 YKRPDTFGLGEETK-----------QSGVLKKSETFSDRTNCYQSLPPPPPPLVKVKKVK 268
Query: 307 SSLSQDELNRRVEAFINKFNAE 328
S S+DELNR+VEAFI K N E
Sbjct: 269 VSRSRDELNRKVEAFIKKCNDE 290
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 6 VKTVLISTGILSMAMGLKLTVPVVSNFIFTEAAPTLSTFFLTCFTPPYLY 55
+K VLISTG+++ AM LK+ VPV +F P + + FLT PPYLY
Sbjct: 5 MKAVLISTGVVATAMHLKVIVPVAMDF---SQNPIILSSFLTWLKPPYLY 51
>AT1G11230.1 | Symbols: | similar to unknown protein [Arabidopsis
thaliana] (TAIR:AT1G11220.1); similar to unknown
[Populus trichocarpa] (GB:ABK92540.1); contains InterPro
domain Protein of unknown function DUF761, plant
(InterPro:IPR008480) | chr1:3763439-3764464 REVERSE
Length = 301
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 82/177 (46%), Gaps = 40/177 (22%)
Query: 172 EEENLAPILQRKESLEFAFNDENEKPPVSARFGHRKTVRSSPEGVTV--VALGVTKPKRQ 229
E ENL P+ EKP VSARF HRK V+ +P+G + AL V PKR
Sbjct: 159 ESENLPPV---------------EKPLVSARFEHRKMVKVTPKGDDIRKKALKVVNPKR- 202
Query: 230 ETLESTWRTIT-EGRAMPL-TRHLKKSETMETQPRRNAAPLADLNGPVMKKSETFGGREX 287
++ W+TI+ EG + PL T H ++ + G ++KSETF R+
Sbjct: 203 ---DNKWKTISEEGTSRPLSTSHYQRPDIFGLGA----------GGDSLRKSETF--RDV 247
Query: 288 XXXXXXXXXXXX-XXXLRKESSLSQDELNRRVEAFINKFNAEMRLQRQESLRQYKEM 343
+ KE S ++LNRR+EAFI K E R ESLR KE+
Sbjct: 248 TNYYHQSSLTVTPPVKMEKEMLPSLEDLNRRIEAFIKKVKEE----RLESLRLDKEV 300
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 45/68 (66%), Gaps = 3/68 (4%)
Query: 6 VKTVLISTGILS-MAMGLKLTVPVVSNFIFTEAAPTLSTFFLTCFTPPYLYLLLNFIILT 64
+K VLISTGI++ M+M LK+ +PV F+ + TL + FL PPYL++ +N +I
Sbjct: 7 IKAVLISTGIITAMSMFLKVFLPV--TLYFSLSFSTLWSSFLPWLKPPYLFVFVNVMITI 64
Query: 65 IVATSKLH 72
I+A+S+ +
Sbjct: 65 IIASSRYY 72
>AT4G04990.1 | Symbols: | similar to unknown protein [Arabidopsis
thaliana] (TAIR:AT1G61260.1); contains InterPro domain
Protein of unknown function DUF761, plant
(InterPro:IPR008480) | chr4:2555088-2557044 FORWARD
Length = 303
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 32/39 (82%)
Query: 303 LRKESSLSQDELNRRVEAFINKFNAEMRLQRQESLRQYK 341
L+KE S+ ++ELN RVEAFI KF EM+LQR ES+R+YK
Sbjct: 256 LKKELSMGREELNSRVEAFITKFKDEMKLQRLESVRRYK 294