Miyakogusa Predicted Gene
- chr3.CM0452.200.nd
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr3.CM0452.200.nd + phase: 0
(527 letters)
Database: TAIR8_pep
32,825 sequences; 13,166,001 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G24100.1 | Symbols: | similar to unknown protein [Arabidopsi... 360 1e-99
AT4G30780.1 | Symbols: | similar to unknown protein [Arabidopsi... 336 2e-92
AT1G54300.1 | Symbols: | similar to catalytic/ cobalamin bindin... 121 1e-27
AT3G05770.1 | Symbols: | catalytic/ cobalamin binding | chr3:17... 120 2e-27
>AT2G24100.1 | Symbols: | similar to unknown protein [Arabidopsis
thaliana] (TAIR:AT4G30780.1); similar to unnamed protein
product [Vitis vinifera] (GB:CAO66612.1) |
chr2:10252001-10253795 FORWARD
Length = 466
Score = 360 bits (923), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 219/471 (46%), Positives = 276/471 (58%), Gaps = 57/471 (12%)
Query: 53 GVPQGFYNPLDEPSPLGLRLRKSPSLLDLIQMRLSQQ--HXXXXXXXXXXXXXXXXXXXX 110
G ++ L+EPSPLGL L+KSPS +LI+M+LSQ
Sbjct: 50 GTSVSKFSLLEEPSPLGLSLKKSPSFQELIEMKLSQSGDDSNSVKKESFGFGGVGTVEKL 109
Query: 111 XXXNFPGTVLKIGTWEYKSRYEGDLVAKCYFAKHKLVWEVLDGCLKNKIEIPWSDIMALK 170
NFP T+L+IG WEYKSRYEGDLVAKCYFAKHKLVWEVL+ LK+KIEI WSDIMALK
Sbjct: 110 KASNFPATILRIGQWEYKSRYEGDLVAKCYFAKHKLVWEVLEQGLKSKIEIQWSDIMALK 169
Query: 171 ANYPEDAPGTLEVVLARRPLFFREINPQPRKHTLWQATSDFTGGQASIQRRHFMQCPQGL 230
AN PED PGTL +VLARRPLFFRE NPQPRKHTLWQATSDFT GQAS+ R+HF+QCP G+
Sbjct: 170 ANLPEDEPGTLTIVLARRPLFFRETNPQPRKHTLWQATSDFTDGQASMNRQHFLQCPPGI 229
Query: 231 LGKHFEKLIQCDPRLNFLSQQPELVLESPYFESGTAIHDHIESSDGFDSKSEEQPSLFGL 290
+ KHFEKL+QCD RL LS+QPE+ L +P+F+S +I E PS+ G
Sbjct: 230 MNKHFEKLVQCDHRLFCLSRQPEINLAAPFFDSRLSIF--------------EDPSVSGS 275
Query: 291 HEVEXXXXXXXXXXXXEHNLMGKAVENVSQEITSPSTVMNSHAIKDFRSRGAETLKFLSN 350
H + EH ++S + SPS+VM++ AI+ G+ + +
Sbjct: 276 HNI---ASPVGAQSSSEH-------VSLSHDALSPSSVMDARAIEGV--GGSIDSRNTNG 323
Query: 351 LDQIKLPGLHPSMSMDDLVNHIGHCISTQMTSENSKFGGDSQYAMLEEFTQYLFNDSQLT 410
QIK+PGLH S+SM+D + +S Q N +F EE Q L +D+ T
Sbjct: 324 WSQIKMPGLHQSISMNDFLTF----LSDQACENNQEF---------EEMKQLLLSDNTQT 370
Query: 411 PASDEKFVMSRVNSLYSLLQKDPPTAEDKTMRHGNNVFDVNKVGEVGESNSTQTRLSPCK 470
SDEK VMS+VNS +LLQ +A + + N+ + VG N+ R P
Sbjct: 371 DPSDEKSVMSKVNSFCNLLQ----SAANSQL----NIETADTERVVGVDNN---RHMPEG 419
Query: 471 NKVIDLECQPDDASGSNQGIGMSRKESAGDLLHNLPRIASLPHFLFPMPED 521
K + D AS S GMSRK+S DLL +LPRI SLP FLF + E+
Sbjct: 420 GKRV-----VDPASSSKPLQGMSRKDSFSDLLVHLPRITSLPKFLFNISEE 465
>AT4G30780.1 | Symbols: | similar to unknown protein [Arabidopsis
thaliana] (TAIR:AT2G24100.1); similar to unnamed protein
product [Vitis vinifera] (GB:CAO66612.1) |
chr4:14990529-14992861 FORWARD
Length = 589
Score = 336 bits (861), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 216/542 (39%), Positives = 279/542 (51%), Gaps = 101/542 (18%)
Query: 59 YNPLDEPSPLGLRLRKSPSLLDLIQMRLS----------------------QQHXXXXXX 96
YNPLDEPSPLGL L+KSPSLL+LIQM+++ +
Sbjct: 63 YNPLDEPSPLGLSLKKSPSLLELIQMKITHCGDPKAAETLKAGALGSGLKRESKTIAAAA 122
Query: 97 XXXXXXXXXXXXXXXXXNFPGTVLKIGTWEYKSRYEGDLVAKCYFAKHKLVWEVLDGCLK 156
NFP ++LKIG WEYKSRYEGDLVAKCYFAKHKLVWEVL+ LK
Sbjct: 123 SVGPTLAPGSIEKLKASNFPASLLKIGQWEYKSRYEGDLVAKCYFAKHKLVWEVLEQGLK 182
Query: 157 NKIEIPWSDIMALKANYPEDAPGTLEVVLARRPLFFREINPQPRKHTLWQATSDFTGGQA 216
+KIEI WSDIMALKAN PED PGTL +VLAR+PLFFRE NPQPRKHTLWQATSDFT GQA
Sbjct: 183 SKIEIQWSDIMALKANCPEDGPGTLTLVLARQPLFFRETNPQPRKHTLWQATSDFTDGQA 242
Query: 217 SIQRRHFMQCPQGLLGKHFEKLIQCDPRLNFLSQQPELVLESPYFESGTAIHDHIESSDG 276
S+ R+HF+QC QG++ KHFEKL+QCD RL LS+QPE+ ++SPYF++ +I + S G
Sbjct: 243 SMNRQHFLQCAQGIMNKHFEKLVQCDHRLFHLSRQPEIAIDSPYFDARQSIFEDPSESKG 302
Query: 277 F---DSKSEEQPSLFGLHEVEXXXXXXXXXXXXEHNLMGKAVENVSQEITSPSTVMNSHA 333
+ PS+ G + EH + S E SPS+V+++ A
Sbjct: 303 HPFGNLNLSTGPSISGTQNL---ASPVGAQSSSEHMYL-------SHEAPSPSSVIDARA 352
Query: 334 IKDFRSRGAETLKFLSNLDQIKLPGLHPSMSMDDLVNHIGHCISTQMTSEN--------- 384
+ A + ++ QI+ PG+H SMS+ D + + C + T N
Sbjct: 353 NEGIGGSEAVNSRNRTDCGQIEAPGIHQSMSLSDFLAVL--CDTKNTTDLNLADDVDGLH 410
Query: 385 ------------------------------------------SKFGGDSQYAMLEEF--- 399
S G S +E+F
Sbjct: 411 QSMSVSDFVAYLSDSRNITDSDQIKVPGLHQSMSVSDFVGLLSDSAGGSHPEHMEKFEIM 470
Query: 400 TQYLFNDSQLTPASDEKFVMSRVNSLYSLLQKDPPTAEDKTMRHGNNVFDVNKVGEVGES 459
Q L +D+ A DEK +M RVNSL++LL KDP A + + N V E
Sbjct: 471 KQQLLSDNIQFEAPDEKSLMPRVNSLFNLLYKDPNVAANSQL---NTEMSVGLKSEPKGI 527
Query: 460 NSTQTRLSPCKNKVIDLECQPDDASGSNQGIGMSRKESAGDLLHNLPRIASLPHFLFPMP 519
S + N+V+ D + S++ GM RK+S DLL +LPRI SLP FL +
Sbjct: 528 VSDNNNNNNNNNRVL-------DTASSSKPQGMLRKDSFSDLLLHLPRITSLPKFLSNIS 580
Query: 520 ED 521
E+
Sbjct: 581 EE 582
>AT1G54300.1 | Symbols: | similar to catalytic/ cobalamin binding
[Arabidopsis thaliana] (TAIR:AT3G05770.1); similar to
hypothetical protein OsJ_027300 [Oryza sativa (japonica
cultivar-group)] (GB:EAZ43817.1) |
chr1:20274477-20275676 FORWARD
Length = 314
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/160 (44%), Positives = 93/160 (58%), Gaps = 10/160 (6%)
Query: 114 NFPGTVLKIGTWEYKSRYEGDLVAKCYFAKHKLVWEVLDG-------CLKNKIEIPWSDI 166
NFP + ++IG W ++ D+VAK YFAK KL+WE L G LK KIEI W+D+
Sbjct: 2 NFPISTIRIGGWVVVAKNPDDIVAKFYFAKKKLIWEFLFGEPETNTLRLKRKIEIQWNDV 61
Query: 167 MALKANY-PEDAPGTLEVVLARRPLFFREINPQPRKHTLW-QATSDFTGGQASIQRRHFM 224
+ + + D G L++ L +RP FF E NPQ KHT W Q DFTG AS RRH +
Sbjct: 62 SSFEESISSRDETGILKIELKKRPTFFIETNPQAGKHTQWKQLDHDFTGDHASNYRRHTL 121
Query: 225 QCPQGLLGKHFEKLIQCDPRLNFLSQQPELVLESPYFESG 264
P G+L K+ EKL+ D + L + P V ES YF+SG
Sbjct: 122 HFPPGVLQKNLEKLV-TDSFWSKLYEVPFPVHESRYFDSG 160
>AT3G05770.1 | Symbols: | catalytic/ cobalamin binding |
chr3:1710334-1712171 REVERSE
Length = 410
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 110/215 (51%), Gaps = 13/215 (6%)
Query: 62 LDEPSPLGLRLRKSPSLLDLIQMRLSQQHX---XXXXXXXXXXXXXXXXXXXXXXNFPGT 118
+DE L L L K+P L++ I+ L + NFP +
Sbjct: 20 VDEGPRLNLPLTKTPELINKIESYLKVHYTCPHQQTENSSKTSTLPKSPEKLKAMNFPIS 79
Query: 119 VLKIGTWEYKSRYEGDLVAKCYFAKHKLVWEVLDG-------CLKNKIEIPWSDIMALKA 171
+KIG + ++ D+VAK YFAK KL+WE L G LK+KIEI W+D+ + +
Sbjct: 80 TIKIGDCVFVAKNPDDIVAKFYFAKKKLLWEFLFGEPVANMPRLKSKIEIQWNDVSSFEE 139
Query: 172 NY-PEDAPGTLEVVLARRPLFFREINPQPRKHTLW-QATSDFTGGQASIQRRHFMQCPQG 229
+ D G L++ L +RP FF E NPQ KHT W Q DFTG QAS RRH + P G
Sbjct: 140 SINSRDETGILKIELKKRPTFFTETNPQAGKHTQWKQLDYDFTGDQASYYRRHTLHFPPG 199
Query: 230 LLGKHFEKLIQCDPRLNFLSQQPELVLESPYFESG 264
+L K+ EKL+ D + L + P V ES YF+ G
Sbjct: 200 VLQKNLEKLL-TDSFWSKLYKVPFPVHESLYFDIG 233