Miyakogusa Predicted Gene

chr3.CM0282.1080.nc
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr3.CM0282.1080.nc + phase: 0 
         (572 letters)

Database: TAIR8_pep 
           32,825 sequences; 13,166,001 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G53850.2 | Symbols:  | haloacid dehalogenase-like hydrolase f...   716   0.0  
AT5G53850.1 | Symbols:  | haloacid dehalogenase-like hydrolase f...   590   e-168
AT5G53850.3 | Symbols:  | haloacid dehalogenase-like hydrolase f...   579   e-165

>AT5G53850.2 | Symbols:  | haloacid dehalogenase-like hydrolase
           family protein | chr5:21878381-21882043 REVERSE
          Length = 507

 Score =  716 bits (1847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/477 (71%), Positives = 399/477 (83%), Gaps = 10/477 (2%)

Query: 16  QAYLEGKAVNDTRALIAELCRHFYNLGWVSGTGGSITIKVHDDSIPKPHQLVIMSPSGVQ 75
           QAYLEGK V +T +L+ ELCRHFY  GWVSGTGGSIT+KVHD SIPKP QL++MSPSGVQ
Sbjct: 13  QAYLEGKEVKETSSLVTELCRHFYTQGWVSGTGGSITMKVHDASIPKPEQLIVMSPSGVQ 72

Query: 76  KERMEPEDMYVLSHTGEVLAAXXXXXXXXXXXXCSDCGPLFMKAYEMRDAGAVIHSHGIE 135
           KERM+PEDMY+LS  G +++             C+DC PLFMKAYEMR+AGAVIHSHG+E
Sbjct: 73  KERMQPEDMYILSANGSIISTPSPKPYPNKPPKCTDCAPLFMKAYEMRNAGAVIHSHGME 132

Query: 136 SCLVTMLNPLAKEFRITHMEMIKGIKGHGYYDELVIPIIENTSYEYELTESLAKAIEAYP 195
           SCLVTMLNP AKEFRITHMEMIKGI+GHGYYDELV+PIIENT+YE ELT+SL KAIEAYP
Sbjct: 133 SCLVTMLNPQAKEFRITHMEMIKGIQGHGYYDELVVPIIENTAYENELTDSLTKAIEAYP 192

Query: 196 KTTAVLVRNHGIYVWGDSWISAKTQSECYHYLFDAAIKLHQLGLDWSTPNHGPIHSPRSL 255
           K TAVLVRNHG+Y+WGDSWI AKTQ+ECYHYLFDAAIKLHQLGLD +TP+HGPI      
Sbjct: 193 KATAVLVRNHGVYIWGDSWIHAKTQAECYHYLFDAAIKLHQLGLDAATPDHGPIRRTIHS 252

Query: 256 RIAGDSNLSVKARKVNGEIDPFPRCIVLDIEGTTTPISFVTEVLFPYARDNVERHLSKTF 315
           +I  DS    +  +         R IVLDIEGTTTPI+FVT+VLFPYAR+NV +HL+ T+
Sbjct: 253 QIK-DSQYEREWPR---------RWIVLDIEGTTTPITFVTDVLFPYARENVGKHLNLTY 302

Query: 316 DTPETQADIKLLRSQVESDLEQGVAGAVPIPEDNAVKEEVIAALVTNVEAMIKADRKITA 375
            T ETQ DIKLLR+QVE DL +GV GAVPIP  +  KE+VIAA+V+NVEAMI+ADRKITA
Sbjct: 303 HTAETQEDIKLLRAQVEEDLREGVTGAVPIPHADEGKEKVIAAMVSNVEAMIRADRKITA 362

Query: 376 LKELQGHIWHTGYENNELKGMVFDDVPEALEKWHALGIKVYIYSSGSRLAQRLIFGHTNH 435
           LKELQGHIW TG+E +ELK +VF+DV +ALEKWH+ GIKVYIYSSGSRLAQ+L+FG+T++
Sbjct: 363 LKELQGHIWRTGFECDELKAIVFEDVADALEKWHSSGIKVYIYSSGSRLAQKLLFGNTDY 422

Query: 436 GDLRKYLSGFFDTTVGNKRETHSYVEISASLGVDKPSDILFVTDVFQEATAAKAAGM 492
           GDLRKY+SGFFDTT+GNK+E+ SY EI  +LGVD P++I+FVTDV+QEA AAKAAG+
Sbjct: 423 GDLRKYISGFFDTTIGNKKESRSYKEIKETLGVDDPAEIMFVTDVYQEAVAAKAAGL 479


>AT5G53850.1 | Symbols:  | haloacid dehalogenase-like hydrolase
           family protein | chr5:21878843-21882043 REVERSE
          Length = 402

 Score =  590 bits (1520), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 282/399 (70%), Positives = 327/399 (81%), Gaps = 10/399 (2%)

Query: 16  QAYLEGKAVNDTRALIAELCRHFYNLGWVSGTGGSITIKVHDDSIPKPHQLVIMSPSGVQ 75
           QAYLEGK V +T +L+ ELCRHFY  GWVSGTGGSIT+KVHD SIPKP QL++MSPSGVQ
Sbjct: 13  QAYLEGKEVKETSSLVTELCRHFYTQGWVSGTGGSITMKVHDASIPKPEQLIVMSPSGVQ 72

Query: 76  KERMEPEDMYVLSHTGEVLAAXXXXXXXXXXXXCSDCGPLFMKAYEMRDAGAVIHSHGIE 135
           KERM+PEDMY+LS  G +++             C+DC PLFMKAYEMR+AGAVIHSHG+E
Sbjct: 73  KERMQPEDMYILSANGSIISTPSPKPYPNKPPKCTDCAPLFMKAYEMRNAGAVIHSHGME 132

Query: 136 SCLVTMLNPLAKEFRITHMEMIKGIKGHGYYDELVIPIIENTSYEYELTESLAKAIEAYP 195
           SCLVTMLNP AKEFRITHMEMIKGI+GHGYYDELV+PIIENT+YE ELT+SL KAIEAYP
Sbjct: 133 SCLVTMLNPQAKEFRITHMEMIKGIQGHGYYDELVVPIIENTAYENELTDSLTKAIEAYP 192

Query: 196 KTTAVLVRNHGIYVWGDSWISAKTQSECYHYLFDAAIKLHQLGLDWSTPNHGPIHSPRSL 255
           K TAVLVRNHG+Y+WGDSWI AKTQ+ECYHYLFDAAIKLHQLGLD +TP+HGPI      
Sbjct: 193 KATAVLVRNHGVYIWGDSWIHAKTQAECYHYLFDAAIKLHQLGLDAATPDHGPIRRTIHS 252

Query: 256 RIAGDSNLSVKARKVNGEIDPFPRCIVLDIEGTTTPISFVTEVLFPYARDNVERHLSKTF 315
           +I  DS    +  +         R IVLDIEGTTTPI+FVT+VLFPYAR+NV +HL+ T+
Sbjct: 253 QIK-DSQYEREWPR---------RWIVLDIEGTTTPITFVTDVLFPYARENVGKHLNLTY 302

Query: 316 DTPETQADIKLLRSQVESDLEQGVAGAVPIPEDNAVKEEVIAALVTNVEAMIKADRKITA 375
            T ETQ DIKLLR+QVE DL +GV GAVPIP  +  KE+VIAA+V+NVEAMI+ADRKITA
Sbjct: 303 HTAETQEDIKLLRAQVEEDLREGVTGAVPIPHADEGKEKVIAAMVSNVEAMIRADRKITA 362

Query: 376 LKELQGHIWHTGYENNELKGMVFDDVPEALEKWHALGIK 414
           LKELQGHIW TG+E +ELK +VF+DV +ALEKWH+ GIK
Sbjct: 363 LKELQGHIWRTGFECDELKAIVFEDVADALEKWHSSGIK 401


>AT5G53850.3 | Symbols:  | haloacid dehalogenase-like hydrolase
           family protein | chr5:21878843-21882043 REVERSE
          Length = 418

 Score =  579 bits (1493), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 282/415 (67%), Positives = 327/415 (78%), Gaps = 26/415 (6%)

Query: 16  QAYLEGKAVNDTRALIAELCRHFYNLGWVSGTGGSITIKVHDDSIPKPHQLVIMSPSGVQ 75
           QAYLEGK V +T +L+ ELCRHFY  GWVSGTGGSIT+KVHD SIPKP QL++MSPSGVQ
Sbjct: 13  QAYLEGKEVKETSSLVTELCRHFYTQGWVSGTGGSITMKVHDASIPKPEQLIVMSPSGVQ 72

Query: 76  KERMEPEDMYVLSHTGEVLAAXXXXXXXXXXXXCSDCGPLFMK----------------A 119
           KERM+PEDMY+LS  G +++             C+DC PLFMK                A
Sbjct: 73  KERMQPEDMYILSANGSIISTPSPKPYPNKPPKCTDCAPLFMKNRRLSLGKRLRKLGYKA 132

Query: 120 YEMRDAGAVIHSHGIESCLVTMLNPLAKEFRITHMEMIKGIKGHGYYDELVIPIIENTSY 179
           YEMR+AGAVIHSHG+ESCLVTMLNP AKEFRITHMEMIKGI+GHGYYDELV+PIIENT+Y
Sbjct: 133 YEMRNAGAVIHSHGMESCLVTMLNPQAKEFRITHMEMIKGIQGHGYYDELVVPIIENTAY 192

Query: 180 EYELTESLAKAIEAYPKTTAVLVRNHGIYVWGDSWISAKTQSECYHYLFDAAIKLHQLGL 239
           E ELT+SL KAIEAYPK TAVLVRNHG+Y+WGDSWI AKTQ+ECYHYLFDAAIKLHQLGL
Sbjct: 193 ENELTDSLTKAIEAYPKATAVLVRNHGVYIWGDSWIHAKTQAECYHYLFDAAIKLHQLGL 252

Query: 240 DWSTPNHGPIHSPRSLRIAGDSNLSVKARKVNGEIDPFPRCIVLDIEGTTTPISFVTEVL 299
           D +TP+HGPI      +I  DS    +  +         R IVLDIEGTTTPI+FVT+VL
Sbjct: 253 DAATPDHGPIRRTIHSQIK-DSQYEREWPR---------RWIVLDIEGTTTPITFVTDVL 302

Query: 300 FPYARDNVERHLSKTFDTPETQADIKLLRSQVESDLEQGVAGAVPIPEDNAVKEEVIAAL 359
           FPYAR+NV +HL+ T+ T ETQ DIKLLR+QVE DL +GV GAVPIP  +  KE+VIAA+
Sbjct: 303 FPYARENVGKHLNLTYHTAETQEDIKLLRAQVEEDLREGVTGAVPIPHADEGKEKVIAAM 362

Query: 360 VTNVEAMIKADRKITALKELQGHIWHTGYENNELKGMVFDDVPEALEKWHALGIK 414
           V+NVEAMI+ADRKITALKELQGHIW TG+E +ELK +VF+DV +ALEKWH+ GIK
Sbjct: 363 VSNVEAMIRADRKITALKELQGHIWRTGFECDELKAIVFEDVADALEKWHSSGIK 417