Miyakogusa Predicted Gene
- chr3.CM0279.130.nd
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr3.CM0279.130.nd + phase: 0 /pseudo/partial
(931 letters)
Database: TAIR8_pep
32,825 sequences; 13,166,001 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G17210.1 | Symbols: | zinc ion binding | chr1:5880495-588465... 472 e-133
AT1G48950.1 | Symbols: | zinc ion binding | chr1:18110731-18113... 183 5e-46
>AT1G17210.1 | Symbols: | zinc ion binding | chr1:5880495-5884650
REVERSE
Length = 958
Score = 472 bits (1215), Expect = e-133, Method: Compositional matrix adjust.
Identities = 258/506 (50%), Positives = 329/506 (65%), Gaps = 9/506 (1%)
Query: 67 SCRPWERCDLLRRLSTFKLA---GKIPKVAGSLACAKRGWVSVDVTKIECELCGAQLDFA 123
SCR W+R DLLRRL+TFK + GK PK A SLACA++GWVSVD+ K++CE CG+ L ++
Sbjct: 80 SCRTWDRGDLLRRLATFKPSNWLGK-PKTASSLACAQKGWVSVDLDKLQCEYCGSILQYS 138
Query: 124 --MLSASSVEADTSSEELSKQLDRGHKIKCPWRGNSCPESLVQFPPTSPSALIGGFKDRC 181
S + EADT+ E+ SKQLD H+ CPW G SC ESLVQFPPT PSALIGG+KDRC
Sbjct: 139 PPQDSLNPPEADTTGEKFSKQLDDAHESSCPWVGKSCSESLVQFPPTPPSALIGGYKDRC 198
Query: 182 DGLLQFYSLPIVSSSAVEQMRISHNPQIDRFIAQLQVQTAGELGYKAEMGVTGEQAPYLY 241
DGLLQFYSLPIVS SA++QMR S PQIDR +A + + + E+A Y
Sbjct: 199 DGLLQFYSLPIVSPSAIDQMRASRRPQIDRLLAHANDDLSFRMDNISAAETYKEEAFSNY 258
Query: 242 SYAQKFISLCGWEPLWHSNILDCEEQSAESAKNGYSSCPAKGSA--PDSAPSRKEFSTSS 299
S AQK ISLCGWEP W NI DCEE SA+SA+NG S PA+ + D PSRK+FS SS
Sbjct: 259 SRAQKLISLCGWEPRWLPNIQDCEEHSAQSARNGCPSGPARNQSRLQDPGPSRKQFSASS 318
Query: 300 RKDTGDNDVLGSEFNCESRSPLLDCSLCGATVRVWDFLTTPRPVHLAPCGIDTPQTSKKI 359
RK +G+ +VLG E+ ESR PLLDCSLCG TVR+ DF+TT RPV A + P+TSKK+
Sbjct: 319 RKASGNYEVLGPEYKSESRLPLLDCSLCGVTVRICDFMTTSRPVPFAAINANLPETSKKM 378
Query: 360 ASTRGISAASGINELAAADGIEKERTGDRDEATTSNKGQFVSNKNLDLNLKVACGPSCSP 419
TRG SA SGIN A +G+ +++ D DEA TS K + VSN L A S +
Sbjct: 379 GVTRGTSATSGINGWFANEGMGQQQNEDVDEAETSVKRRLVSNVGLSFYQNAAGASSSAQ 438
Query: 420 KNLISTVNHVQDASEGRFLMIGNPSASGVGDRAASNESQGPNARKRRLDDGAITIDRPHL 479
N+ T ++ Q + G+ ++ PS S VGDRAAS ES+GP+ RKR LDDG T+DRP+L
Sbjct: 439 LNMSVTRDNYQFSDRGKEVLWRQPSGSEVGDRAASYESRGPSTRKRSLDDGGSTVDRPYL 498
Query: 480 SMQQADSAERTIMDNEITDSQQFSAGPSKRARDTSLLETIQFPL-RNSTGALPIHSLDSQ 538
+Q+ADS E T++D + + SAGPSKR R + E F R+ + P HSLD++
Sbjct: 499 RIQRADSVEGTVVDRDGDEVNDDSAGPSKRTRGSDAHEAYPFLYGRDLSVGGPSHSLDAE 558
Query: 539 IEADPNIGNQLSSEKDHVVSMPSTRD 564
E + N + S + V++ P RD
Sbjct: 559 NEREVNRSDPFSEGNEQVMAFPGARD 584
>AT1G48950.1 | Symbols: | zinc ion binding | chr1:18110731-18113776
FORWARD
Length = 594
Score = 183 bits (464), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 118/311 (37%), Positives = 171/311 (54%), Gaps = 11/311 (3%)
Query: 51 DKSSADSHMVASNSNPS--CRPWERCDLLRRLSTFKLAGKI--PKVAGSLACAKRGWVSV 106
D+SSA V + ++PS CRPW+R DL+RRL+TFK P+V ++ CA+RGWV+
Sbjct: 62 DRSSA--LKVPAGTSPSGLCRPWDRGDLMRRLATFKSMTWFAKPQVISAVNCARRGWVND 119
Query: 107 DVTKIECELCGAQLDFAMLSA-SSVEADTSSEELSKQLDRGHKIKCPWRGNSCPESLVQF 165
D I CE CGA L F+ S+ S + + ++ S +L+ GHK+ CPW NSC E+L +F
Sbjct: 120 DADSIACESCGAHLYFSAPSSWSKQQVEKAASVFSLKLESGHKLLCPWIENSCEETLSEF 179
Query: 166 PPTSPSALIGGFKDRCDGLLQFYSLPIVSSSAVEQMRISHNPQ-IDRFIAQLQVQTAGEL 224
P +P L+ ++R + LLQ +LP++S SA+E MR S + + R IA TA E
Sbjct: 180 PLMAPQDLVDRHEERSEALLQLLALPVISPSAIEYMRSSDLEEFLKRPIAPACSDTAAES 239
Query: 225 GYKAEM-GVTGEQAPYLYSYAQKFISLCGWEPLWHSNILDCEEQSAESAKNGYSSCPAKG 283
+ G L+ AQK ISLCGWEP I+DC+++ +E+A+ +
Sbjct: 240 SQTESLTNHVGASPAQLFYQAQKLISLCGWEPRALPYIVDCKDKLSETARGTETIDLLPE 299
Query: 284 SAPDSAPSRKEFSTSSRKDTGDND--VLGSEFNCESRSPLLDCSLCGATVRVWDFLTTPR 341
+A S E + +G+N+ L N + S +LDC LCGA V +W F T PR
Sbjct: 300 TATRELLSISESTPIPNGISGNNENPTLPDTLNSDPSSVVLDCKLCGACVGLWVFSTVPR 359
Query: 342 PVHLAPCGIDT 352
P+ L DT
Sbjct: 360 PLELCRVTGDT 370