Miyakogusa Predicted Gene

chr3.CM0279.130.nd
Show Alignment: 
BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr3.CM0279.130.nd + phase: 0 /pseudo/partial
         (931 letters)

Database: TAIR8_pep 
           32,825 sequences; 13,166,001 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G17210.1 | Symbols:  | zinc ion binding | chr1:5880495-588465...   472   e-133
AT1G48950.1 | Symbols:  | zinc ion binding | chr1:18110731-18113...   183   5e-46

>AT1G17210.1 | Symbols:  | zinc ion binding | chr1:5880495-5884650
           REVERSE
          Length = 958

 Score =  472 bits (1215), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 258/506 (50%), Positives = 329/506 (65%), Gaps = 9/506 (1%)

Query: 67  SCRPWERCDLLRRLSTFKLA---GKIPKVAGSLACAKRGWVSVDVTKIECELCGAQLDFA 123
           SCR W+R DLLRRL+TFK +   GK PK A SLACA++GWVSVD+ K++CE CG+ L ++
Sbjct: 80  SCRTWDRGDLLRRLATFKPSNWLGK-PKTASSLACAQKGWVSVDLDKLQCEYCGSILQYS 138

Query: 124 --MLSASSVEADTSSEELSKQLDRGHKIKCPWRGNSCPESLVQFPPTSPSALIGGFKDRC 181
               S +  EADT+ E+ SKQLD  H+  CPW G SC ESLVQFPPT PSALIGG+KDRC
Sbjct: 139 PPQDSLNPPEADTTGEKFSKQLDDAHESSCPWVGKSCSESLVQFPPTPPSALIGGYKDRC 198

Query: 182 DGLLQFYSLPIVSSSAVEQMRISHNPQIDRFIAQLQVQTAGELGYKAEMGVTGEQAPYLY 241
           DGLLQFYSLPIVS SA++QMR S  PQIDR +A      +  +   +      E+A   Y
Sbjct: 199 DGLLQFYSLPIVSPSAIDQMRASRRPQIDRLLAHANDDLSFRMDNISAAETYKEEAFSNY 258

Query: 242 SYAQKFISLCGWEPLWHSNILDCEEQSAESAKNGYSSCPAKGSA--PDSAPSRKEFSTSS 299
           S AQK ISLCGWEP W  NI DCEE SA+SA+NG  S PA+  +   D  PSRK+FS SS
Sbjct: 259 SRAQKLISLCGWEPRWLPNIQDCEEHSAQSARNGCPSGPARNQSRLQDPGPSRKQFSASS 318

Query: 300 RKDTGDNDVLGSEFNCESRSPLLDCSLCGATVRVWDFLTTPRPVHLAPCGIDTPQTSKKI 359
           RK +G+ +VLG E+  ESR PLLDCSLCG TVR+ DF+TT RPV  A    + P+TSKK+
Sbjct: 319 RKASGNYEVLGPEYKSESRLPLLDCSLCGVTVRICDFMTTSRPVPFAAINANLPETSKKM 378

Query: 360 ASTRGISAASGINELAAADGIEKERTGDRDEATTSNKGQFVSNKNLDLNLKVACGPSCSP 419
             TRG SA SGIN   A +G+ +++  D DEA TS K + VSN  L      A   S + 
Sbjct: 379 GVTRGTSATSGINGWFANEGMGQQQNEDVDEAETSVKRRLVSNVGLSFYQNAAGASSSAQ 438

Query: 420 KNLISTVNHVQDASEGRFLMIGNPSASGVGDRAASNESQGPNARKRRLDDGAITIDRPHL 479
            N+  T ++ Q +  G+ ++   PS S VGDRAAS ES+GP+ RKR LDDG  T+DRP+L
Sbjct: 439 LNMSVTRDNYQFSDRGKEVLWRQPSGSEVGDRAASYESRGPSTRKRSLDDGGSTVDRPYL 498

Query: 480 SMQQADSAERTIMDNEITDSQQFSAGPSKRARDTSLLETIQFPL-RNSTGALPIHSLDSQ 538
            +Q+ADS E T++D +  +    SAGPSKR R +   E   F   R+ +   P HSLD++
Sbjct: 499 RIQRADSVEGTVVDRDGDEVNDDSAGPSKRTRGSDAHEAYPFLYGRDLSVGGPSHSLDAE 558

Query: 539 IEADPNIGNQLSSEKDHVVSMPSTRD 564
            E + N  +  S   + V++ P  RD
Sbjct: 559 NEREVNRSDPFSEGNEQVMAFPGARD 584


>AT1G48950.1 | Symbols:  | zinc ion binding | chr1:18110731-18113776
           FORWARD
          Length = 594

 Score =  183 bits (464), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 118/311 (37%), Positives = 171/311 (54%), Gaps = 11/311 (3%)

Query: 51  DKSSADSHMVASNSNPS--CRPWERCDLLRRLSTFKLAGKI--PKVAGSLACAKRGWVSV 106
           D+SSA    V + ++PS  CRPW+R DL+RRL+TFK       P+V  ++ CA+RGWV+ 
Sbjct: 62  DRSSA--LKVPAGTSPSGLCRPWDRGDLMRRLATFKSMTWFAKPQVISAVNCARRGWVND 119

Query: 107 DVTKIECELCGAQLDFAMLSA-SSVEADTSSEELSKQLDRGHKIKCPWRGNSCPESLVQF 165
           D   I CE CGA L F+  S+ S  + + ++   S +L+ GHK+ CPW  NSC E+L +F
Sbjct: 120 DADSIACESCGAHLYFSAPSSWSKQQVEKAASVFSLKLESGHKLLCPWIENSCEETLSEF 179

Query: 166 PPTSPSALIGGFKDRCDGLLQFYSLPIVSSSAVEQMRISHNPQ-IDRFIAQLQVQTAGEL 224
           P  +P  L+   ++R + LLQ  +LP++S SA+E MR S   + + R IA     TA E 
Sbjct: 180 PLMAPQDLVDRHEERSEALLQLLALPVISPSAIEYMRSSDLEEFLKRPIAPACSDTAAES 239

Query: 225 GYKAEM-GVTGEQAPYLYSYAQKFISLCGWEPLWHSNILDCEEQSAESAKNGYSSCPAKG 283
                +    G     L+  AQK ISLCGWEP     I+DC+++ +E+A+   +      
Sbjct: 240 SQTESLTNHVGASPAQLFYQAQKLISLCGWEPRALPYIVDCKDKLSETARGTETIDLLPE 299

Query: 284 SAPDSAPSRKEFSTSSRKDTGDND--VLGSEFNCESRSPLLDCSLCGATVRVWDFLTTPR 341
           +A     S  E +      +G+N+   L    N +  S +LDC LCGA V +W F T PR
Sbjct: 300 TATRELLSISESTPIPNGISGNNENPTLPDTLNSDPSSVVLDCKLCGACVGLWVFSTVPR 359

Query: 342 PVHLAPCGIDT 352
           P+ L     DT
Sbjct: 360 PLELCRVTGDT 370