Miyakogusa Predicted Gene

chr3.CM0253.470.nd
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr3.CM0253.470.nd - phase: 0 
         (434 letters)

Database: TAIR8_pep 
           32,825 sequences; 13,166,001 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G52380.1 | Symbols:  | Ran-binding protein 1 domain-containin...   312   2e-85
AT3G15970.1 | Symbols:  | Ran-binding protein 1 domain-containin...   281   8e-76
AT2G30060.1 | Symbols:  | Ran-binding protein 1b (RanBP1b) | chr...    55   1e-07
AT5G58590.1 | Symbols: RANBP1 | RANBP1 (RAN BINDING PROTEIN 1) |...    50   2e-06
AT1G07140.1 | Symbols: SIRANBP | SIRANBP (Ran-binding protein 1a...    50   3e-06

>AT1G52380.1 | Symbols:  | Ran-binding protein 1 domain-containing
           protein / RanBP1 domain-containing protein |
           chr1:19513648-19514970 FORWARD
          Length = 440

 Score =  312 bits (800), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 201/459 (43%), Positives = 280/459 (61%), Gaps = 46/459 (10%)

Query: 1   MGDAENALQPSKKRAAGRELTRDTP-IDDEEDSPDLESGTFKRASEEVLASRRIVKVRRQ 59
           MGD+EN  QPSKKR A ++L+RD P +DD++DS +LESGTFK+AS+EVLASRRIV+V+R+
Sbjct: 1   MGDSENVQQPSKKRGALKQLSRDNPGLDDDDDSAELESGTFKKASDEVLASRRIVRVKRK 60

Query: 60  QTTSAP--SSNPFAGIRLVPSSGSTANPAEATTEV--------QTVADESKGSDDTDKGS 109
           + ++AP  +SNPFAGI+LVP++   + P      +        + V ++++ + D ++G 
Sbjct: 61  EPSAAPVAASNPFAGIQLVPTTAPASTPVGTNAPLAESKLAPAEAVVEDNQKASDIEEGD 120

Query: 110 E-KAKEEDTKQSESKPDENAAKGSNADEEHAAEKENTGIKPEVDKEKSEGVSKSDNENKD 168
           E  +K+ D K +     E   K  + D+ H  +  +  +      E ++ VS   N   +
Sbjct: 121 EVDSKKVDVKDAVG---EETEKTKDKDDNHCGKSADVQV---AATEVAQMVSCDTNVCNN 174

Query: 169 AAGKESASEVDEGQTKDHNDSENIDKKENTEDGDKKDDKAESAEPSAEGGNLKSFQLLSS 228
           A   E   + D    KD    +  +KKE   +G ++ DK      + + G   SFQ  SS
Sbjct: 175 AV--EGTDQTDFPLEKDSG-GDQAEKKEKEGNGIEEADK------NGDNGAFSSFQQHSS 225

Query: 229 NQNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMKNDKPFGLGL-TNNGSSVFGA---SS 284
           N+NA                            ++     FG GL ++N SS+FGA   S 
Sbjct: 226 NKNAFTGLASTEASGSSFSFGLVSQDGSTGTGSL-----FGFGLPSSNSSSIFGATGSSI 280

Query: 285 VAKSEGNGLA-MQEVAVETGEENEKVVFNADSVLFEFVDGSWKERGKGELKVNVTSGSEK 343
           + KSEG+G    QEV+ ETGEENEKV F+ADS++FE++DG WKERGKGELKVNV+S   K
Sbjct: 281 IKKSEGSGFPPKQEVSTETGEENEKVAFSADSIMFEYLDGGWKERGKGELKVNVSSNDGK 340

Query: 344 ARILMRSKGNLRLIMNARLYADMKLTNMDKKGVTFACINSASEGKGGLSTFAVKFKDVSI 403
           AR++MR+KGN RLI+NA LY +MKL NMDKKG+TFAC+NS SEGK GLSTFA+KFKD +I
Sbjct: 341 ARLVMRAKGNYRLILNASLYPEMKLANMDKKGITFACVNSVSEGKEGLSTFALKFKDPTI 400

Query: 404 VEEFKAAVMEHKDG---------TSTVLKTPENSPKASD 433
           VEEF+ A+ +HKD          ++  LKTPENSP A+D
Sbjct: 401 VEEFRVAIDKHKDSKPMEKAAEKSALPLKTPENSPTATD 439


>AT3G15970.1 | Symbols:  | Ran-binding protein 1 domain-containing
           protein / RanBP1 domain-containing protein |
           chr3:5408988-5410385 REVERSE
          Length = 465

 Score =  281 bits (718), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 197/469 (42%), Positives = 263/469 (56%), Gaps = 41/469 (8%)

Query: 1   MGDAENALQPSKKRAAGRELTRDTP--IDDEEDSPDLESGTFKRASEEVLASRRIVKVRR 58
           MGD++NA+  S+KR A +EL+RD P   DD+ED+  LESGTF  AS+EVLASRRI++VRR
Sbjct: 1   MGDSDNAIPFSRKRTALKELSRDNPGLDDDDEDTSALESGTFNTASKEVLASRRIIRVRR 60

Query: 59  --QQTTSAPSSNPFAGIRLVPSSGSTANPAEATTEVQTVADESKGSDDTDKGSEKAKEED 116
             +  T+ P+SNPF GIRLVP +    + A A T     A + +   D    + K  + D
Sbjct: 61  TDRSATAPPASNPFTGIRLVPFTAPAPSTAAAETTKPLSAGKQETLADGRSDATKETDGD 120

Query: 117 TKQSESKPDENAAKGSNADEEHAAEKENTGIKPEVDKEKSEGVSKSD-----NENKDAAG 171
           +K+     D    + +  DE  A  K+   I    +KE SE V+  +     N+N+D   
Sbjct: 121 SKEKSDAIDAVGKQETQGDEISAKTKD---IIDGGEKEMSEAVNSVEGGGAVNKNEDEIK 177

Query: 172 KESASEVDEGQ--TKDHNDSENI---------DKKEN-TEDGDKKDDKAESAEPSAEGGN 219
               +EV  G+   KD N++ N          D   N TE   K+ D  E  E + + G 
Sbjct: 178 TTMVTEVAAGEETVKDDNNNSNTVEGSDCVVKDTGGNQTEKEGKEGDGNEDTEKNGDSGA 237

Query: 220 LKSFQLLSSNQNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMKNDKPFGLGLTNNG-SS 278
           L SF   SS++NA                            + ++   F  G  NNG SS
Sbjct: 238 LSSFHQHSSSKNAFTGLASTGFSASSFSFGLVPQEGSTGSGSEQSS--FSFGQANNGNSS 295

Query: 279 VFGASSVAKSEGNGL-------AMQEVAVETGEENEKVVFNADSVLFEFVDGSWKERGKG 331
           +FGAS                 + Q+V+VETGEENEK  F ADSV+FE+++G WKERGKG
Sbjct: 296 LFGASVATSITTKSTETTTAFPSKQDVSVETGEENEKAAFTADSVMFEYLEGGWKERGKG 355

Query: 332 ELKVNV-TSGSEKARILMRSKGNLRLIMNARLYADMKLTNMDKKGVTFACINSASEGKGG 390
           ELKVN+ T+ + KAR++MRSKGN RL +NA LY +MKL  MDKKG+TFAC+NS S+ K G
Sbjct: 356 ELKVNISTTENRKARLVMRSKGNYRLTLNASLYPEMKLAKMDKKGITFACVNSVSDAKDG 415

Query: 391 LSTFAVKFKDVSIVEEFKAAVMEHKDGTSTV------LKTPENSPKASD 433
           LST A+KFKD ++VEEF+A + EHKD   +V      LKTPENSP A D
Sbjct: 416 LSTLALKFKDPTVVEEFRAVIEEHKDSKPSVAEAAAPLKTPENSPSAED 464


>AT2G30060.1 | Symbols:  | Ran-binding protein 1b (RanBP1b) |
           chr2:12834112-12835628 FORWARD
          Length = 217

 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 11/125 (8%)

Query: 293 LAMQEVAVETGEENEKVVFNADSVLFEF-VDGS-WKERGKGELKVNVTSGSEKARILMRS 350
           + ++EVAV TGEE+E  + +  S L+ F  DGS WKERG G +K      S K R++MR 
Sbjct: 34  VRLEEVAVTTGEEDEDTILDLKSKLYRFDKDGSQWKERGAGTVKFLKHRVSGKIRLVMRQ 93

Query: 351 KGNLRLIMNARLYADMKLTNMDKKGVTFACINSA---SEGKGGLSTFAVKFKDV----SI 403
              L++  N  + + M +   +  G   +C+  A   S+G+     F ++F  V    + 
Sbjct: 94  SKTLKICANHLVGSGMSV--QEHAGNDKSCVWHARDFSDGELKDELFCIRFASVENCKAF 151

Query: 404 VEEFK 408
           +++FK
Sbjct: 152 MQKFK 156


>AT5G58590.1 | Symbols: RANBP1 | RANBP1 (RAN BINDING PROTEIN 1) |
           chr5:23697545-23698940 REVERSE
          Length = 219

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 7/118 (5%)

Query: 295 MQEVAVETGEENEKVVFNADSVLFEF--VDGSWKERGKGELKVNVTSGSEKARILMRSKG 352
           ++EVAV TGEE+E  V +  S ++ F      WKERG G +K+     + K R++MR   
Sbjct: 33  LEEVAVTTGEEDEDAVLDLKSKMYRFDKEGNQWKERGAGTVKLLKHKETGKVRLVMRQSK 92

Query: 353 NLRLIMNARLYADMKLTNMDKKGVTFACINSA---SEGKGGLSTFAVKFKDVSIVEEF 407
            L++  N  + + M +   +  G   +C+  A   S+G+     F ++F  +   + F
Sbjct: 93  TLKICANHLISSGMSV--QEHSGNEKSCLWHATDFSDGELKDELFCIRFASIENCKTF 148


>AT1G07140.1 | Symbols: SIRANBP | SIRANBP (Ran-binding protein 1a);
           Ran GTPase binding | chr1:2192359-2193687 REVERSE
          Length = 228

 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 58/126 (46%), Gaps = 20/126 (15%)

Query: 295 MQEVAVETGEENEKVVFNADSVLFEFVDGS--WKERGKGELKVNVTSGSEKARILMRSKG 352
           ++EVAV TGEE+E  V +  S L+ F   +  WKERG G +K      + K R++MR   
Sbjct: 34  LEEVAVTTGEEDEDAVLDLKSKLYRFDKDANQWKERGAGTVKFLKHKNTGKIRLVMRQSK 93

Query: 353 NLRLIMNARLYADMKLTNM---DKKGVTFA-------------CINSASEGKGGLSTFAV 396
            L++  N  + + M +      +K  V  A             CI  AS       TF  
Sbjct: 94  TLKICANHFVKSGMSVQEHVGNEKSCVWHARDFADGELKDELFCIRFAS--IENCKTFMQ 151

Query: 397 KFKDVS 402
           KFK+V+
Sbjct: 152 KFKEVA 157