Miyakogusa Predicted Gene

chr3.CM0246.220.nc
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr3.CM0246.220.nc - phase: 0 /partial
         (915 letters)

Database: TAIR8_pep 
           32,825 sequences; 13,166,001 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G07910.1 | Symbols: ATRNL, RNL | ATRNL/RNL (ARABIDOPSIS THALI...  1323   0.0  

>AT1G07910.1 | Symbols: ATRNL, RNL | ATRNL/RNL (ARABIDOPSIS THALIANA
           RNA LIGASE); 2',3'-cyclic-nucleotide
           3'-phosphodiesterase/ RNA ligase (ATP)/ polynucleotide
           kinase | chr1:2446709-2454383 FORWARD
          Length = 1104

 Score = 1323 bits (3423), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 634/897 (70%), Positives = 732/897 (81%), Gaps = 26/897 (2%)

Query: 30  EAPLSSTMGDSATGSETVSNKLAGMHIGENS-------EQTGLGHANKGAIWKPKSYGT- 81
           +AP  S    +   +E V+N+  G+ + E++        QT   H  +  +WKPKSYGT 
Sbjct: 2   DAPFESGDSSATVVAEAVNNQFGGLSLKESNTNAPVLPSQTTSNHRVQNLVWKPKSYGTV 61

Query: 82  ---TAATEVDNKPAGKVAVDGARVDATGVASPQKSSISSAGLSKLFQGNLLEKFEVDNST 138
              ++ATEV     GK +     V   G +   K  ++   LSK+F GNLLEKF VD ST
Sbjct: 62  SGSSSATEV-----GKTSA----VSQIGSSGDTKVGLN---LSKIFGGNLLEKFSVDKST 109

Query: 139 YSQAHIRATFYPKFENEKSDQETRTRMIEMVSKGLATLEVSLKHSGSLFMYAGHEGGAYA 198
           Y  A IRATFYPKFENEK+DQE RTRMIEMVSKGLATLEVSLKHSGSLFMYAGH+GGAYA
Sbjct: 110 YCHAQIRATFYPKFENEKTDQEIRTRMIEMVSKGLATLEVSLKHSGSLFMYAGHKGGAYA 169

Query: 199 KNSFGNIYTAVGVFVLGRMFREAWGTEASKKQAEFNNFLERNHMCISMELVTAVLGDHGQ 258
           KNSFGNIYTAVGVFVL RMFREAWGT+A KK+AEFN+FLE+N MCISMELVTAVLGDHGQ
Sbjct: 170 KNSFGNIYTAVGVFVLSRMFREAWGTKAPKKEAEFNDFLEKNRMCISMELVTAVLGDHGQ 229

Query: 259 RPQEDFVVVTAVTELGNGKPKFYSTPEIIAFCRKWRLPTNHVWLFSTRKSASSFFATYDA 318
           RP +D+VVVTAVTELGNGKP+FYST EII+FCRKWRLPTNHVWLFSTRKS +SFFA +DA
Sbjct: 230 RPLDDYVVVTAVTELGNGKPQFYSTSEIISFCRKWRLPTNHVWLFSTRKSVTSFFAAFDA 289

Query: 319 LCEEGTATSVCKVLDEIADVSVPGSKDHVKAQGEILEGLVARLVSHESSNHIEKVLKEFP 378
           LCEEG ATSVC+ LDE+AD+SVP SKDHVK QGEILEGLVAR+VS +SS  +E VL++ P
Sbjct: 290 LCEEGIATSVCRALDEVADISVPASKDHVKVQGEILEGLVARIVSSQSSRDMENVLRDHP 349

Query: 379 PPPADGVALDFGPSLREICAANRSDEKQQIKALLESVGSSFCPDYSDWYGTDGADIHSRN 438
           PPP DG  LD G SLREICAA+RS+EKQQ++ALL SVG SFCP   +W+G +    H ++
Sbjct: 350 PPPCDGANLDLGLSLREICAAHRSNEKQQMRALLRSVGPSFCPSDVEWFGDES---HPKS 406

Query: 439 VDRSVVSKFLQAHPADYSTKKLQEIIRLMREKRFPAAFKCYHNFHKVDAISSDNVFYKMV 498
            D+SV++KFLQ+ PADYST KLQE++RLM+EKR PAAFKCYHNFH+ + IS DN+FYK+V
Sbjct: 407 ADKSVITKFLQSQPADYSTSKLQEMVRLMKEKRLPAAFKCYHNFHRAEDISPDNLFYKLV 466

Query: 499 IHVHSDSAFRRYQKEMRHRPGLWPLYRGFFVDINLFKANKEKAAEISMKXXXXXXXXXXX 558
           +HVHSDS FRRY KEMRH P LWPLYRGFFVDINLFK+NK +                  
Sbjct: 467 VHVHSDSGFRRYHKEMRHMPSLWPLYRGFFVDINLFKSNKGRDLMALKSIDNASENDGRG 526

Query: 559 EKDDFADEDANLMVKLKFLTYKLRTFLIRNGLPVLFKEGQSAYKAYYLRQMKIWGTSPGK 618
           EKD  AD+DANLM+K+KFLTYKLRTFLIRNGL +LFK+G +AYK YYLRQMKIWGTS GK
Sbjct: 527 EKDGLADDDANLMIKMKFLTYKLRTFLIRNGLSILFKDGAAAYKTYYLRQMKIWGTSDGK 586

Query: 619 QKELSKMLDEWAVHIRRKCGNKQLSSSIYLSEAEPFLEQFAKRSPQNQALIGSAGSLVRT 678
           QKEL KMLDEWA +IRRKCGN QLSSS YLSEAEPFLEQ+AKRSP+N  LIGSAG+LVRT
Sbjct: 587 QKELCKMLDEWAAYIRRKCGNDQLSSSTYLSEAEPFLEQYAKRSPKNHILIGSAGNLVRT 646

Query: 679 EDFLAIVEEGQDEEGDLVAERDMAPSGPSISVKDTVPKNEGLIVFFPGIPGCAKSALCKE 738
           EDFLAIV+   DEEGDLV ++ + P+ P  +VK+ V K+EGLIVFFPGIPG AKSALCKE
Sbjct: 647 EDFLAIVDGDLDEEGDLVKKQGVTPATPEPAVKEAVQKDEGLIVFFPGIPGSAKSALCKE 706

Query: 739 LLNAQGGLGDDRPVHSLMGDLIKGKYWQKVAEERRKKPNSIMLADKNAPNKEVWRQIEDM 798
           LLNA GG GDDRPVH+LMGDL+KGKYW KVA+ERRKKP SIMLADKNAPN++VWRQIEDM
Sbjct: 707 LLNAPGGFGDDRPVHTLMGDLVKGKYWPKVADERRKKPQSIMLADKNAPNEDVWRQIEDM 766

Query: 799 CLRTKASAVPVVPESEGTDSNPFSLDALAVFMFRVLQRVNHPGNLDKASPNAGYVLLMFY 858
           C RT+ASAVP+V +SEGTD+NP+SLDALAVFMFRVLQRVNHPG LDK S NAGYVLLMFY
Sbjct: 767 CRRTRASAVPIVADSEGTDTNPYSLDALAVFMFRVLQRVNHPGKLDKESSNAGYVLLMFY 826

Query: 859 DLYDGESRKEFEGELIERFGSLVKMPLLKSDRNPLPEAVQCILKEGIDLFKLHSKRH 915
            LY+G++R EFE ELIERFGSL+KMPLLKSDR PLP+ V+ +L+EGIDLF LHS+RH
Sbjct: 827 HLYEGKNRNEFESELIERFGSLIKMPLLKSDRTPLPDPVKSVLEEGIDLFNLHSRRH 883