Miyakogusa Predicted Gene
- chr3.CM0127.630.nc
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr3.CM0127.630.nc - phase: 0
(898 letters)
Database: TAIR8_pep
32,825 sequences; 13,166,001 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G55310.1 | Symbols: TOP1, TOP1alpha | TOP1alpha (TOPOISOMERAS... 851 0.0
AT5G55300.1 | Symbols: TOP1BETA | TOP1BETA (DNA TOPOISOMERASE 1 ... 838 0.0
AT4G26701.1 | Symbols: | DNA binding / DNA topoisomerase type I... 130 3e-30
>AT5G55310.1 | Symbols: TOP1, TOP1alpha | TOP1alpha (TOPOISOMERASE
I) | chr5:22447615-22451816 REVERSE
Length = 917
Score = 851 bits (2199), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/549 (72%), Positives = 453/549 (82%)
Query: 350 GDGQKKWTTLVHNGVIFPPPYQPHRVKMLYKGKPVDLTADQEEVATMYAVMRDTDYMLKD 409
GDGQKKW TL HNGVIFPPPY+ H VK+L++GKPVDLT +QEEVATM+AVMR+T+Y K
Sbjct: 363 GDGQKKWKTLQHNGVIFPPPYKRHGVKILFQGKPVDLTPEQEEVATMFAVMRETEYYKKP 422
Query: 410 KFKENFWNDWRKLLGKNHVIQNLKDCDFTPIYDWCXXXXXXXXXXXXXXXXXXXXXXXXX 469
KF+ENFWNDWRKLLGKNH+I++L DCDFTPIY+W
Sbjct: 423 KFRENFWNDWRKLLGKNHMIKSLDDCDFTPIYEWYMQEKETKKQMTAEEKRIVKEEKLKQ 482
Query: 470 XXXXXWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPSDIVINIGKDAPIPE 529
WA++DGV+E++GNFRVEPPGLFRGRGEHPKMGKLK+RIRP DI INIGK+APIPE
Sbjct: 483 EEKYMWAVLDGVRERIGNFRVEPPGLFRGRGEHPKMGKLKKRIRPCDITINIGKEAPIPE 542
Query: 530 CPIPGERWKEIRHDNTVTWLAFWNDPINPKLFKYVFLAASSSLKGQSDKEKYEKARMLKD 589
CPIPGERWKE++HDNTVTWLAFW+DPINPK FKYVFLAASSSLKGQSDKEKYEKAR L +
Sbjct: 543 CPIPGERWKEVKHDNTVTWLAFWSDPINPKEFKYVFLAASSSLKGQSDKEKYEKARKLHN 602
Query: 590 YIGNIRAAYTKDFTSKDITKQQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVT 649
+IG+IRAAYTKDF +KD+TK+QIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKV NV
Sbjct: 603 HIGSIRAAYTKDFNNKDVTKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVE 662
Query: 650 REAPNKLKFNFLGKDSIKYENTVEVELPVYNAILKFQKDKKGGDDLFDMLDTSKLNAHLK 709
PNKLKF+FLGKDSI+Y NTVEVE VY AI +FQ K DDLFD LDTSKLN HLK
Sbjct: 663 CIPPNKLKFDFLGKDSIQYVNTVEVEPLVYKAIGQFQAGKSKTDDLFDELDTSKLNTHLK 722
Query: 710 ELMPGLTAKVFRTFNASITLDDMLNKDTKDGDVGEKIVVYQHANKQVAIICNHQRSVSKS 769
ELM GLTAKVFRT+NASITLD ML+K+T+DGDV EK+VVYQ ANK+VAIICNHQR+VSKS
Sbjct: 723 ELMAGLTAKVFRTYNASITLDLMLSKETRDGDVPEKVVVYQQANKEVAIICNHQRTVSKS 782
Query: 770 HDTQMTRLNEKLDELQAVLKELRTDLDRARXXXXXXXXXXXXXXXNLSSEALEKKISQTN 829
H Q+ +L K++EL+ +KEL DLDRA+ NL+ EALEKKI QT
Sbjct: 783 HGAQVEKLAVKIEELREQIKELNIDLDRAKKGRTPLMGSDGKRKRNLTPEALEKKIMQTQ 842
Query: 830 AKIEKMQRDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFTWA 889
KIEKM+RDM+TKED+KTVALGTSKINY+DPRITVAWCKRH+VPIEKIFNKSLLAKF WA
Sbjct: 843 GKIEKMERDMQTKEDMKTVALGTSKINYMDPRITVAWCKRHDVPIEKIFNKSLLAKFAWA 902
Query: 890 MDVDPDFRF 898
MDVDP+FRF
Sbjct: 903 MDVDPEFRF 911
>AT5G55300.1 | Symbols: TOP1BETA | TOP1BETA (DNA TOPOISOMERASE 1
BETA); DNA topoisomerase type I | chr5:22442063-22446271
REVERSE
Length = 916
Score = 838 bits (2164), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/549 (71%), Positives = 445/549 (81%)
Query: 350 GDGQKKWTTLVHNGVIFPPPYQPHRVKMLYKGKPVDLTADQEEVATMYAVMRDTDYMLKD 409
GDGQKKWTTLVHNGVIFPPPY+PH +K+LYKGKPVDLT +QEEVATM+AVMR+TDY K
Sbjct: 365 GDGQKKWTTLVHNGVIFPPPYKPHGIKILYKGKPVDLTIEQEEVATMFAVMRETDYYTKP 424
Query: 410 KFKENFWNDWRKLLGKNHVIQNLKDCDFTPIYDWCXXXXXXXXXXXXXXXXXXXXXXXXX 469
+F+ENFWNDWR+LLGK HVIQ L DCDFTPIY+W
Sbjct: 425 QFRENFWNDWRRLLGKKHVIQKLDDCDFTPIYEWHLEEKEKKKQMSTEEKKALKEEKMKQ 484
Query: 470 XXXXXWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPSDIVINIGKDAPIPE 529
WA+VDGVKEK+GNFRVEPPGLFRGRGEHPKMGKLK+RI P +I +NIGK APIPE
Sbjct: 485 EEKYMWAVVDGVKEKIGNFRVEPPGLFRGRGEHPKMGKLKKRIHPCEITLNIGKGAPIPE 544
Query: 530 CPIPGERWKEIRHDNTVTWLAFWNDPINPKLFKYVFLAASSSLKGQSDKEKYEKARMLKD 589
CPI GERWKE++HDNTVTWLAFW DPINPK FKYVFL A SSLKG SDKEKYEKAR L D
Sbjct: 545 CPIAGERWKEVKHDNTVTWLAFWADPINPKEFKYVFLGAGSSLKGLSDKEKYEKARNLTD 604
Query: 590 YIGNIRAAYTKDFTSKDITKQQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVT 649
+I NIR YTK+FT+KD+ +QIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKV NV
Sbjct: 605 HIDNIRTTYTKNFTAKDVKMRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVE 664
Query: 650 REAPNKLKFNFLGKDSIKYENTVEVELPVYNAILKFQKDKKGGDDLFDMLDTSKLNAHLK 709
PNK+KF+FLGKDSI+Y NTVEVE VY AI +FQ K DDLFD LDTSKLNAHLK
Sbjct: 665 CIPPNKIKFDFLGKDSIQYVNTVEVEPLVYKAIGQFQAGKSKTDDLFDELDTSKLNAHLK 724
Query: 710 ELMPGLTAKVFRTFNASITLDDMLNKDTKDGDVGEKIVVYQHANKQVAIICNHQRSVSKS 769
EL+PGLTAKVFRT+NASITLD+ML+++TKDGDV +KIVVYQ ANK+VAIICNHQR+VSK+
Sbjct: 725 ELVPGLTAKVFRTYNASITLDEMLSQETKDGDVTQKIVVYQKANKEVAIICNHQRTVSKT 784
Query: 770 HDTQMTRLNEKLDELQAVLKELRTDLDRARXXXXXXXXXXXXXXXNLSSEALEKKISQTN 829
H Q+ +L +++EL+ VLKEL+T+LDRA+ +L A EKKI+Q +
Sbjct: 785 HGAQIEKLTARIEELKEVLKELKTNLDRAKKGKPPLEGSDGKKIRSLEPNAWEKKIAQQS 844
Query: 830 AKIEKMQRDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFTWA 889
AKIEKM+RDM TKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF KSLL KF WA
Sbjct: 845 AKIEKMERDMHTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFTKSLLEKFAWA 904
Query: 890 MDVDPDFRF 898
MDV+P++RF
Sbjct: 905 MDVEPEYRF 913
>AT4G26701.1 | Symbols: | DNA binding / DNA topoisomerase type I |
chr4:13467752-13468061 FORWARD
Length = 69
Score = 130 bits (327), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 59/68 (86%), Positives = 63/68 (92%)
Query: 831 KIEKMQRDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFTWAM 890
KIEKM+RDM+TKEDLKTVALGTSKINY+DPRITVAWCKRHE PIEKIFNKSLL KF WAM
Sbjct: 2 KIEKMERDMQTKEDLKTVALGTSKINYMDPRITVAWCKRHEAPIEKIFNKSLLEKFAWAM 61
Query: 891 DVDPDFRF 898
DV+P F F
Sbjct: 62 DVEPHFTF 69