Miyakogusa Predicted Gene
- chr3.CM0127.50.nc
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr3.CM0127.50.nc + phase: 0
(1339 letters)
Database: TAIR8_pep
32,825 sequences; 13,166,001 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G16680.1 | Symbols: | PHD finger family protein | chr5:54675... 414 e-115
AT3G02890.1 | Symbols: | PHD finger protein-related | chr3:6410... 379 e-105
AT1G43770.2 | Symbols: | PHD finger family protein | chr1:16550... 109 1e-23
AT4G17850.1 | Symbols: | zinc ion binding | chr4:9923003-992386... 73 1e-12
AT5G61100.1 | Symbols: | zinc ion binding | chr5:24596396-24597... 63 2e-09
AT1G43770.1 | Symbols: | PHD finger family protein | chr1:16550... 57 7e-08
AT5G61110.1 | Symbols: | protein binding / zinc ion binding | c... 50 1e-05
AT3G01460.1 | Symbols: MBD9 | MBD9 (METHYL-CPG-BINDING DOMAIN 9)... 48 4e-05
AT5G09790.2 | Symbols: SDG15, ATXR5 | ATXR5 (SETDOMAIN GROUP 15)... 45 4e-04
AT5G24330.1 | Symbols: ATXR6 | ATXR6 (Arabidopsis thaliana Trith... 44 0.001
AT1G77250.1 | Symbols: | PHD finger family protein | chr1:29025... 44 0.001
>AT5G16680.1 | Symbols: | PHD finger family protein |
chr5:5467537-5472959 REVERSE
Length = 1290
Score = 414 bits (1063), Expect = e-115, Method: Compositional matrix adjust.
Identities = 291/725 (40%), Positives = 406/725 (56%), Gaps = 59/725 (8%)
Query: 269 IVEHDVKVCDICGDSGREDLLAICCRCSDGAEHTYCMREMLEKVPEGDWLCEECKHAEGS 328
+VEHDVKVCDICGD+GREDLLAIC CSDGAEHTYCMREML++VPEGDWLCEEC +
Sbjct: 278 MVEHDVKVCDICGDAGREDLLAICSGCSDGAEHTYCMREMLDEVPEGDWLCEECAEE--A 335
Query: 329 ANLRLDAEVNKNRKVSSSSQISGKRPSESVEVAIAAKRQALESSTGSPKASNPKKTVSLS 388
+ +A+ + +V+ ++ SGKR ++ +E A AKRQ +E+STGSPK S + +LS
Sbjct: 336 EKQKQEAKRKRETEVTFNTYSSGKRHADKIEAAPDAKRQVVEASTGSPKKSILPRVGALS 395
Query: 389 RESSFKSLDNGKVKPGQQIPIRNHHGGDDIALARSLSTGPRSQAARSTLLKXXXXXXXXX 448
RE+SFK LD + K Q DD ARS G + Q + LK
Sbjct: 396 RETSFKGLDRLRGKLNHQTSF-----SDDTESARS--AGSQLQPPKGAFLKSSSFNCSSS 448
Query: 449 KPRAKLIDEVVPQKQKGGGQYISKNMDTPAGL--MSKSMSFKSSNLGRA--TDSKVKMLS 504
KP+ +L+D+ + +QK G + + ++ G + KSM ++++ G + +DS+ KML
Sbjct: 449 KPKVQLMDDAIHPRQKTGKEDTALDLKV-GGFRNVGKSMPSRTTDAGNSGGSDSQAKMLG 507
Query: 505 SKPGTAQDLKGSRHGKESGVFDRKTLSRIDRPVVSASKGDQKLTPRGETAKPSAVNHNRE 564
SK +Q+ K + K+ R SAS DQKL RG ++ S N+NR+
Sbjct: 508 SKVYHSQEGKSLKQVKD----------RNREANASASSIDQKLKSRGNSSV-SHANNNRD 556
Query: 565 FK-VNQDGK------LNSLSKSMNNIGHKSRELQERTSTS---------GHETQQNGLPR 608
K + DGK N + ++ E STS G Q+GLPR
Sbjct: 557 LKGLQSDGKRGGDISTNEKCSASEQSSSQADCKDELPSTSCTGEGMPNHGTVALQDGLPR 616
Query: 609 SRDTANQIDKTKDGCSDRVRSSLTNTSECCTI----GGTQELGDEVSVN-----ATSSSK 659
SR K+K+ S R RSSL ++ G T E D V+ T + K
Sbjct: 617 SRVPREVGKKSKEAFSKRQRSSLLAGAKGLPSSQKGGQTAESSDTSGVSDSDLSTTKNVK 676
Query: 660 EEMHNGNSLKAAIHAALLRRPEIHKKKDVPERTGEFPTSGTDLKCEVSYQDRVSVSNTLK 719
E+++ GN L+AA+ AAL ++P K + V E++ + D E + ++++ S K
Sbjct: 677 EDLNKGNRLRAAVDAALRKKPSFGKNR-VLEQSDASLVANVDSSSEKTLRNQLP-SKMHK 734
Query: 720 NSISTEETNAKQETLDNSTFETSKCLSANNLKQLHFCPADFRSQPRKSDSVGSASGKPVV 779
N +S E L T + K N KQL F AD V + KPV+
Sbjct: 735 NHVSHEGLQGGHPIL-WPTSDPYKQTIVTNEKQLIFPGADTIPSRLVEPEVSFPAVKPVM 793
Query: 780 KDLLNRALEISNVISKTSAIPEYKYIWQGVFEVHRSGKPPDLYTGIQAHLSSCASPKVLD 839
+DL L S V+ ++SAIP++++IWQG EV + +++GIQAHLS+ ASP+V +
Sbjct: 794 RDL---PLVPSPVMLRSSAIPDHEFIWQGDLEVRKIINQSAMHSGIQAHLSTLASPRVAE 850
Query: 840 VVNKFLPEVSLHEVSRLSTWPSQFHQGGGAKEDNIALYFFAKDIESYERYYKSLLDHMIK 899
VVNKF SL+EV R STWP+QF + G KE +IAL+FFAKD ESYER YK L+D+MIK
Sbjct: 851 VVNKFPETFSLNEVPRKSTWPTQFEKLG-TKEAHIALFFFAKDTESYERNYKPLVDNMIK 909
Query: 900 NDLALKGTFDGVELLIFTSNQLPENSQRWNTLFFLWGIFRGRRINHSDSAKKICIPSLNV 959
NDLALKG D V+LLIF SNQLP N QRWN L+FLWG+F+GR+ ++ K +P+ NV
Sbjct: 910 NDLALKGNLDNVDLLIFASNQLPSNCQRWNMLYFLWGVFQGRK--ETNPQKNTSLPTSNV 967
Query: 960 IPNEK 964
+P ++
Sbjct: 968 LPRDR 972
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 2 RLEPGTCKVCSAPCSTCIHLNRVAMGSKAEEYSDENCRVGEANQYXXXXXXXX-XXXXRA 60
++E GTC VCSAPCS+C+H N GSK +E SDENC +Q A
Sbjct: 18 KVESGTCNVCSAPCSSCMHRNVGFTGSKLDESSDENCHGVVGSQCSVNEDDLLPSSMVNA 77
Query: 61 CNRLKDAVTKTSNTPSDHSSHDFLSENAESKPTL 94
L + ++ SN +SSHD LSENAESK T+
Sbjct: 78 HKSLNNTASEASNLV--NSSHDALSENAESKETI 109
>AT3G02890.1 | Symbols: | PHD finger protein-related |
chr3:641050-645310 FORWARD
Length = 963
Score = 379 bits (973), Expect = e-105, Method: Compositional matrix adjust.
Identities = 260/721 (36%), Positives = 377/721 (52%), Gaps = 111/721 (15%)
Query: 269 IVEHDVKVCDICGDSGREDLLAICCRCSDGAEHTYCMREMLEKVPEGDWLCEECKHAEGS 328
++E DVKVCD CGD+GREDLLAIC RCSDGAEHTYCMR ML+KVP+G WLCEECK AE +
Sbjct: 197 MLELDVKVCDTCGDAGREDLLAICSRCSDGAEHTYCMRVMLKKVPKGYWLCEECKFAEKA 256
Query: 329 ANLRLDAEVNKNRKVSSSSQISGKRPSESVEVAIAAKRQALESSTGSPKASNPKKTVSLS 388
+L+ + + +V+ ++QIS KR + E +KR A+ + GSPK S + +LS
Sbjct: 257 EKHKLETKRKRESEVNVNTQISSKRHIDKFEAVPDSKRLAVGAQIGSPKRSVLPRMSTLS 316
Query: 389 RESSFKSLDNGKVKPGQQIPIR---NHHGGDDIALARSLSTGPRSQAARSTLLKXXXXXX 445
RE+SFK L+ KP +++ N H DD R ST + Q+ + + LK
Sbjct: 317 RETSFKGLE----KPTRKLAHYSSFNSHSSDDTESTR--STDSQLQSPKGSFLKSNSFNS 370
Query: 446 XXXKPRAKLIDEVVPQKQKGGGQYISKNMDTPAGLMSKSMSFKSSNLGRATDSKVKMLSS 505
+ + + +D+ + +QK G + S ++ G S N+G++ S+ + S
Sbjct: 371 LSSRSKVRPVDDDMLPRQKTGNENSS--LEVKEGF--------SKNVGKSMSSRCIDVGS 420
Query: 506 KPGTAQDLKGSRHGKESGVFDRKTLSRIDRPVVSASKGDQKLTPRGETAKPSAVNHNREF 565
+KGS+ K+ S P S S+G+ + P ++ R+
Sbjct: 421 SNCNDSKVKGSKQLKD--------WSTEANPSASISRGNSSI-PYAKSP--------RDL 463
Query: 566 K-VNQDGKLNSLSKSMNNIGHKSRELQERTSTSGHETQQNGLPRSRDTANQIDKTKDGCS 624
K + DGK S S N S ++ Q +G+PRSR+ +KTKD
Sbjct: 464 KDLQSDGKQVGDS-SKNEKCSSSEQISSEAKCKDELAQVDGVPRSREFREAGEKTKDAVG 522
Query: 625 DRVRSSLTNTSECCTIGGTQELGDEVSVNATSSSKEEMHNGNSLKAAIHAALLRRPEIHK 684
+ + ++ E+ + GN L+AA+ AAL ++P K
Sbjct: 523 NHQKRNIG---------------------------EDNNKGNRLRAAVDAALRKKPSFSK 555
Query: 685 KKDVPERTGEFPTSGTD------LKC-----------EVSYQDRVSVSNTLKNSISTEET 727
+ + E++ P S D LKC V +Q L+ T
Sbjct: 556 NRGL-EQSDLPPVSNVDSGCNKALKCLSSKVPVIRDWPVGFQGLPGGHPNLRTDKQTNTV 614
Query: 728 NAKQETLDNSTFETSKCLSANNLKQLHFCPADFRSQPRKSDSVGSASGKPVVKDLLNRAL 787
N KQ TL + T+ S SV P V+ ++ R L
Sbjct: 615 NEKQFTLAGTDATTA------------------------SQSVEPEVNDPSVQSVM-RDL 649
Query: 788 EIS--NVISKTSAIPEYKYIWQGVFEVHRSGKPPDLYTGIQAHLSSCASPKVLDVVNKFL 845
++ NV+S TSAIP+ +YIWQG EV +S +++GIQA+LS+ ASPKV++VV +F
Sbjct: 650 PVAAPNVLSTTSAIPKPEYIWQGDLEVQKSRNLSAMHSGIQAYLSTLASPKVVEVVKQFP 709
Query: 846 PEVSLHEVSRLSTWPSQFHQGGGAKEDNIALYFFAKDIESYERYYKSLLDHMIKNDLALK 905
+V+L+EV RLS+WP+QF Q GAKE ++AL+FFAKDIESYE+ YK L+D+MI+ DLALK
Sbjct: 710 EKVTLNEVPRLSSWPAQF-QDTGAKEQHVALFFFAKDIESYEKNYKPLVDNMIQKDLALK 768
Query: 906 GTFDGVELLIFTSNQLPENSQRWNTLFFLWGIFRGRRINHSDSAKKICIPSLNVIPNEKC 965
G +GVELLIF SNQLP++ QRWN LFFLWG+FRG++ + S+ K +P+ V PN
Sbjct: 769 GNLEGVELLIFASNQLPQDCQRWNMLFFLWGVFRGKKESCSNPPKNTPLPASCVSPNRDT 828
Query: 966 F 966
F
Sbjct: 829 F 829
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 71/145 (48%), Gaps = 34/145 (23%)
Query: 1 MRLEPGTCKVCSAPCSTCIHLNRVAMGSKAEEYSDENCRVGEANQYXXXXXXXXXXXXRA 60
+ ++ GTC VCSAPCS+C+H N GSK++E SDEN A+Q
Sbjct: 7 LEIQSGTCNVCSAPCSSCMHHNAEFSGSKSDESSDENSHGVLASQCSFNGD--------- 57
Query: 61 CNRLK----DAVTKTSNTPSD-----HSSHDFLSENAESK-----------PTLSEKYQD 100
N L+ +A + NT S+ +S+HD SENAESK P L ++D
Sbjct: 58 -NLLRSSGVNAPGSSHNTSSEASHLVNSNHDTSSENAESKEIIRSSDISHGPLLDRPHKD 116
Query: 101 SKCLEGLDDSISCNNRASKANLVSG 125
++ +D SCN+ +++ L G
Sbjct: 117 QDSMK-VD---SCNDHQARSTLGQG 137
>AT1G43770.2 | Symbols: | PHD finger family protein |
chr1:16550949-16552697 FORWARD
Length = 431
Score = 109 bits (273), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 82/138 (59%), Gaps = 2/138 (1%)
Query: 805 IWQGVFEVHRSGKPPDLYTGIQAHLSSCASPKVLDVVNKFLPEVSLHEVSRLSTWPSQFH 864
IW+G+ V G GI AH+SS A PKV + + +S + RL WP F
Sbjct: 292 IWRGLMSVK--GGNSCTMDGIVAHVSSLACPKVHETASSLKGRLSAEILPRLEVWPKTFL 349
Query: 865 QGGGAKEDNIALYFFAKDIESYERYYKSLLDHMIKNDLALKGTFDGVELLIFTSNQLPEN 924
+ GG K++++AL+FF + E+ + SL+D M KND A++ + ELL+FTS LP++
Sbjct: 350 KNGGPKDESVALFFFPSSESNDEKVFDSLVDKMKKNDSAMRCVLNDAELLLFTSYMLPKD 409
Query: 925 SQRWNTLFFLWGIFRGRR 942
S +N+ ++LWG+F+ R+
Sbjct: 410 SWTFNSKYYLWGVFKPRQ 427
>AT4G17850.1 | Symbols: | zinc ion binding | chr4:9923003-9923863
FORWARD
Length = 187
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/53 (56%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Query: 270 VEHDVKVCDICGDSGREDLLAICCRCSDGAEHTYCMREMLEKVPEGDWLCEEC 322
+E ++ VCD CGD G E LL ICC C GAEHTYCM E ++KVP+ W C +C
Sbjct: 33 IEREITVCDTCGDQGYEYLLVICCNCGVGAEHTYCMMEKIDKVPDS-WSCYDC 84
>AT5G61100.1 | Symbols: | zinc ion binding | chr5:24596396-24597553
REVERSE
Length = 227
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 275 KVCDICGDSGREDLLAICCRCSDGAEHTYCMREMLEKVPEGDWLCEECKHAEGSANLRLD 334
K C++CG E L+ C C D EHTYC R M ++VP W+CEEC+ AN +
Sbjct: 32 KPCEVCGSDANELLMMTCFMCRDTREHTYCARVMFQRVPRL-WICEECRDFSSVANKTAN 90
Query: 335 AE 336
A+
Sbjct: 91 AQ 92
>AT1G43770.1 | Symbols: | PHD finger family protein |
chr1:16550949-16552347 FORWARD
Length = 371
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 805 IWQGVFEVHRSGKPPDLYTGIQAHLSSCASPKVLDVVNKFLPEVSLHEVSRLSTWPSQFH 864
IW+G+ V G GI AH+SS A PKV + + +S + RL WP F
Sbjct: 292 IWRGLMSV--KGGNSCTMDGIVAHVSSLACPKVHETASSLKGRLSAEILPRLEVWPKTFL 349
Query: 865 QGGGAKEDNIALYFF 879
+ GG K++++AL+FF
Sbjct: 350 KNGGPKDESVALFFF 364
>AT5G61110.1 | Symbols: | protein binding / zinc ion binding |
chr5:24598304-24599217 REVERSE
Length = 161
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 275 KVCDICGDSGREDLLAICCRCSDGAEHTYCMREMLEKVPEGDWLCEECK 323
K C++CG + + + C C D EH YC R L VP W+CEEC+
Sbjct: 31 KPCEVCGSNANDHAIMTCFLCRDTREHIYCARVHLRSVPRM-WICEECR 78
>AT3G01460.1 | Symbols: MBD9 | MBD9 (METHYL-CPG-BINDING DOMAIN 9); DNA
binding | chr3:173323-182045 FORWARD
Length = 2176
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 273 DVKVCDICGDSGREDLLAICCRCSDGAEHTYCMREMLEKVPEGDWLCEECKHAEGSANLR 332
D VC +CG +D + +C C D HTYC+ L ++P+G+W C C A+ A
Sbjct: 1286 DEGVCKVCGVDKDDDSVLLCDTC-DAEYHTYCLNPPLIRIPDGNWYCPSCVIAKRMAQEA 1344
Query: 333 LDA 335
L++
Sbjct: 1345 LES 1347
>AT5G09790.2 | Symbols: SDG15, ATXR5 | ATXR5 (SETDOMAIN GROUP 15) |
chr5:3039205-3040971 REVERSE
Length = 379
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 22/98 (22%)
Query: 277 CDICGDSGREDLLAICCRCSDGAEHTYCMREMLEKVPEGDWLCEEC-------------- 322
C+ CG +D L +C +C G H C+R ++ +VP G WLC +C
Sbjct: 67 CEKCGSGEGDDELLLCDKCDRGF-HMKCLRPIVVRVPIGTWLCVDCSDQRPVRRLSQKKI 125
Query: 323 -------KHAEGSANLRLDAEVNKNRKVSSSSQISGKR 353
KH + L L E + R+ S S + +R
Sbjct: 126 LHFFRIEKHTHQTDKLELSQEETRKRRRSCSLTVKKRR 163
>AT5G24330.1 | Symbols: ATXR6 | ATXR6 (Arabidopsis thaliana
Trithorax- related protein 6); DNA binding |
chr5:8295248-8297000 REVERSE
Length = 349
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 276 VCDICGDSGREDLLAICCRCSDGAEHTYCMREMLEKVPEGDWLCEEC-KH 324
VC+ C + L +C +C G H +C+R +L VP+G W C C KH
Sbjct: 34 VCEECSSGKQPAKLLLCDKCDKGF-HLFCLRPILVSVPKGSWFCPSCSKH 82
>AT1G77250.1 | Symbols: | PHD finger family protein |
chr1:29025338-29027832 REVERSE
Length = 522
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 276 VCDICGDSGREDLLAICCRCSDGAEHTYCMREMLEKVPEGDWLCEECKHA 325
+C C +D + +C C D A H YCMR E VP G+W C CK A
Sbjct: 404 LCRNCLTDKDDDKIVLCDGCDD-AYHIYCMRPPCESVPNGEWFCTACKAA 452