Miyakogusa Predicted Gene

chr3.CM0112.180.nd
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr3.CM0112.180.nd - phase: 0 
         (207 letters)

Database: TAIR8_pep 
           32,825 sequences; 13,166,001 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G21060.1 | Symbols: ATGRP2B | ATGRP2B (GLYCINE-RICH PROTEIN 2...   103   5e-23
AT2G17870.1 | Symbols:  | cold-shock DNA-binding family protein ...    97   1e-20
AT4G38680.1 | Symbols: CSDP2, GRP2 | CSDP2/GRP2 (COLD SHOCK DOMA...    92   2e-19
AT4G36020.1 | Symbols: CSDP1 | CSDP1 (COLD SHOCK DOMAIN PROTEIN ...    91   3e-19

>AT2G21060.1 | Symbols: ATGRP2B | ATGRP2B (GLYCINE-RICH PROTEIN
          2B); nucleic acid binding | chr2:9044064-9044669
          REVERSE
          Length = 201

 Score =  103 bits (258), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 52/76 (68%), Positives = 56/76 (73%)

Query: 5  RVNGKVKWFNDQKGFGFITPDDGGDDLFVHQSEIKSEGFRCLGEGEDVEFIVASDPDGRA 64
          R  G VKWF+ QKGFGFITP DGGDDLFVHQS I+SEGFR L   E VEF V  D  GR 
Sbjct: 14 RRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGRP 73

Query: 65 KAIEVTGPNGQAVQGT 80
          KAIEV+GP+G  VQG 
Sbjct: 74 KAIEVSGPDGAPVQGN 89


>AT2G17870.1 | Symbols:  | cold-shock DNA-binding family protein |
          chr2:7771358-7772263 REVERSE
          Length = 301

 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 46/77 (59%), Positives = 57/77 (74%)

Query: 2  SDSRVNGKVKWFNDQKGFGFITPDDGGDDLFVHQSEIKSEGFRCLGEGEDVEFIVASDPD 61
          S +R  GKV WF+D KG+GFITPDDGG++LFVHQS I S+GFR L  GE VE+ +A   D
Sbjct: 7  SAARSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSD 66

Query: 62 GRAKAIEVTGPNGQAVQ 78
          G+ KAIEVT P G ++ 
Sbjct: 67 GKTKAIEVTAPGGGSLN 83


>AT4G38680.1 | Symbols: CSDP2, GRP2 | CSDP2/GRP2 (COLD SHOCK
          DOMAIN PROTEIN 2, GLYCINE RICH PROTEIN 2); nucleic acid
          binding | chr4:18072234-18072845 REVERSE
          Length = 203

 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/76 (67%), Positives = 57/76 (75%)

Query: 5  RVNGKVKWFNDQKGFGFITPDDGGDDLFVHQSEIKSEGFRCLGEGEDVEFIVASDPDGRA 64
          R  G VKWF+ QKGFGFITPDDGGDDLFVHQS I+SEGFR L   E VEF V  D + R 
Sbjct: 10 RRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNNRP 69

Query: 65 KAIEVTGPNGQAVQGT 80
          KAI+V+GP+G  VQG 
Sbjct: 70 KAIDVSGPDGAPVQGN 85


>AT4G36020.1 | Symbols: CSDP1 | CSDP1 (COLD SHOCK DOMAIN PROTEIN
          1); RNA binding / double-stranded DNA binding / nucleic
          acid binding / single-stranded DNA binding |
          chr4:17043446-17044345 REVERSE
          Length = 299

 Score = 91.3 bits (225), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 42/78 (53%), Positives = 53/78 (67%)

Query: 1  MSDSRVNGKVKWFNDQKGFGFITPDDGGDDLFVHQSEIKSEGFRCLGEGEDVEFIVASDP 60
           S +R  GKV WFN  KG+GFITPDDG  +LFVHQS I SEG+R L  G+ VEF +    
Sbjct: 6  QSAARSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGS 65

Query: 61 DGRAKAIEVTGPNGQAVQ 78
          DG+ KA+ VT P G +++
Sbjct: 66 DGKTKAVNVTAPGGGSLK 83