Miyakogusa Predicted Gene

chr3.CM0111.570.nd
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr3.CM0111.570.nd + phase: 0 
         (109 letters)

Database: TAIR8_pep 
           32,825 sequences; 13,166,001 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G22500.1 | Symbols: ATECP31 | ATECP31 (late embryogenesis abu...   113   3e-26
AT3G22490.1 | Symbols:  | late embryogenesis abundant protein, p...   105   5e-24

>AT3G22500.1 | Symbols: ATECP31 | ATECP31 (late embryogenesis
           abundant protein ECP31) | chr3:7971927-7972872 REVERSE
          Length = 256

 Score =  113 bits (282), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 62/107 (57%), Positives = 70/107 (65%), Gaps = 4/107 (3%)

Query: 1   MSQEQPRRGEREAIKYGDVFNVSGELASKPVMPRDAAMMQSAEDQVLGQIQKGGPAAVME 60
           MSQEQPRR  RE +KYGDVF VSGELA KP+ P DA MMQSAE  V G  QKGGPAAVM+
Sbjct: 1   MSQEQPRR-PREPVKYGDVFEVSGELADKPIAPEDAKMMQSAETHVFGHTQKGGPAAVMQ 59

Query: 61  SAAAKNERAGHVNHQAATKFARNQGVYVSQT---DNGVTETLGGQVI 104
           SAA  N R G V+    T+    +G  V QT       TE +GGQV+
Sbjct: 60  SAATTNIRGGFVHPDDKTELVAERGATVEQTVPAATVTTEFVGGQVV 106


>AT3G22490.1 | Symbols:  | late embryogenesis abundant protein,
           putative / LEA protein, putative | chr3:7969792-7970745
           REVERSE
          Length = 262

 Score =  105 bits (262), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 60/113 (53%), Positives = 74/113 (65%), Gaps = 6/113 (5%)

Query: 1   MSQE-QPRRGEREAIKYGDVFNVSGELASKPVMPRDAAMMQSAEDQVLGQIQKGGPAAVM 59
           MSQE QP+R  +E + YGDVF VSGELA KP+ P DA MMQ+AE +V G  QKGG AAVM
Sbjct: 1   MSQEEQPKR-PQEPVTYGDVFEVSGELADKPIAPEDANMMQAAETRVFGHTQKGGAAAVM 59

Query: 60  ESAAAKNERAGHVNHQAATKFARNQGVYVSQTD----NGVTETLGGQVIDWFF 108
           +SAA  N+R G V+    T  A  +GV V+QTD       TE +GGQV+  + 
Sbjct: 60  QSAATANKRGGFVHPGDTTDLAAERGVTVAQTDVPGARVTTEFVGGQVVGQYV 112